mRNA_L-elsbetiae_contig1670.4527.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A141BSM5_9PHAE (30S ribosomal protein S5, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM5_9PHAE) HSP 1 Score: 217 bits (552), Expect = 9.720e-70 Identity = 109/159 (68.55%), Postives = 137/159 (86.16%), Query Frame = 1 Query: 1 MITQHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 477 +I + R+VK+SR+SKVVKGGKKI+FR +V G+ + VGVGVGKAKE+ A++KA ++KKN+IN+P+ +G+TIPHS+IG AG SK+FIRPA++GTGVIAG SVRIVLELAGIKNIL+KQLGSNN LNNARATI ALK L+TI+QVI+ RQIS EQ+ G Sbjct: 8 IIWEQRVVKVSRVSKVVKGGKKISFRATVVIGDMEQKVGVGVGKAKEVSIAVKKAETDAKKNIINIPVAEGKTIPHSMIGVAGGSKIFIRPAVQGTGVIAGGSVRIVLELAGIKNILSKQLGSNNPLNNARATIMALKDLTTIEQVIQKRQISFEQIIG 166
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A0S0GN90_COSCS (30S ribosomal protein S5, chloroplastic n=30 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GN90_COSCS) HSP 1 Score: 213 bits (541), Expect = 4.590e-68 Identity = 107/156 (68.59%), Postives = 135/156 (86.54%), Query Frame = 1 Query: 10 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 477 + R+VKISR+SKVVKGGKKI+FR +V G+ + VGVGVGKA+E+ AI+KA ++KKN++ +PI++G+TIPH+++G AG SKVFIRPA+ GTGVIAG SVRIVLELAGIKNIL+KQLGSNN LNNARATI ALK L+TI+QV++ RQISLEQ+ G Sbjct: 11 EQRVVKISRVSKVVKGGKKISFRATVVVGDMEERVGVGVGKAEEVSTAIKKAETDAKKNVLTIPIVEGKTIPHAMVGIAGGSKVFIRPAVPGTGVIAGGSVRIVLELAGIKNILSKQLGSNNPLNNARATIVALKSLNTIEQVMQKRQISLEQMLG 166
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A8E6D2P2_9PHAE (30S ribosomal protein S5, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2P2_9PHAE) HSP 1 Score: 211 bits (537), Expect = 2.060e-67 Identity = 103/156 (66.03%), Postives = 130/156 (83.33%), Query Frame = 1 Query: 10 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 477 + R+VKI+R+SKVVKGGKK++FR +V+GN N +VGVG+GKA+E AI+KA N+KKNL+ VP++KGQTIPHSIIG G KVFIRPA+ GTGVIAG +VR+VLELAG+KNIL+KQLGSNNALNNARAT+ LK + I Q+ + RQIS+EQ+ G Sbjct: 14 EKRVVKIARVSKVVKGGKKLSFRATLVTGNRNGLVGVGIGKAEETALAIKKAEVNAKKNLVKVPLVKGQTIPHSIIGNTGGCKVFIRPAVPGTGVIAGGAVRVVLELAGVKNILSKQLGSNNALNNARATVIGLKNIKAIGQIAQKRQISIEQVLG 169
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: D1GJR6_FUCVE (30S ribosomal protein S5, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJR6_FUCVE) HSP 1 Score: 209 bits (532), Expect = 1.070e-66 Identity = 105/159 (66.04%), Postives = 134/159 (84.28%), Query Frame = 1 Query: 1 MITQHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 477 +I + R+VK+SR+SKVVKGGKKI+FR +V G+ VGVGVGKAKE+ A++KA ++KKN+IN+PI++G+TIPHS+IG AG SKVFIRPA+ GTGVIAG SVRIVLELAG+KNIL++QLGSNN LNNARATI ALK L+T+ +VI+ R+I EQ+ G Sbjct: 8 IIWEQRVVKVSRVSKVVKGGKKISFRATVVVGDMEDKVGVGVGKAKEVSTAVKKAETDAKKNVINIPIVEGKTIPHSMIGIAGGSKVFIRPAVPGTGVIAGGSVRIVLELAGVKNILSEQLGSNNPLNNARATILALKDLTTVQRVIQKRKIPFEQILG 166
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A8F0JXK8_9PHAE (Ribosomal protein S5 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXK8_9PHAE) HSP 1 Score: 209 bits (532), Expect = 1.150e-66 Identity = 108/159 (67.92%), Postives = 134/159 (84.28%), Query Frame = 1 Query: 1 MITQHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 477 ++ + R+VKISR+SKVVKGGKKI+FR +V G+ VGVG+GKA+E+ AI+KA +++KN+INVPI +G+TIPH IIG G SKVFIRPA+ GTGVIAGSSVRIVLELAGIKNIL+KQLGSNNALNNARATI L+KL T+ ++++ RQISLEQL G Sbjct: 8 IVWEKRVVKISRVSKVVKGGKKISFRATVVVGDMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIIGIDGGSKVFIRPAVPGTGVIAGSSVRIVLELAGIKNILSKQLGSNNALNNARATIVGLEKLITVKEILEKRQISLEQLLG 166
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A7T8JJZ4_SCYLO (30S ribosomal protein S5, chloroplastic n=7 Tax=Ectocarpales TaxID=2877 RepID=A0A7T8JJZ4_SCYLO) HSP 1 Score: 202 bits (514), Expect = 7.380e-64 Identity = 106/156 (67.95%), Postives = 129/156 (82.69%), Query Frame = 1 Query: 10 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 477 + R+VK+SR+SKVVKGGKKI+FR +V G+ VGVGVGKA+E+ AI+KA +++KN+I VPI +G+TIPH+ +G SKVFIRPA+ GTGVIAG SVRIVLELAGIKNIL+KQLGSNN LNNARATITALK L TI QV++ RQISLEQ+ G Sbjct: 18 EKRVVKVSRVSKVVKGGKKISFRATVVVGDMEYQVGVGVGKAEEVSTAIKKAETDARKNVIIVPIAEGKTIPHATVGVECGSKVFIRPAVPGTGVIAGGSVRIVLELAGIKNILSKQLGSNNPLNNARATITALKSLDTIKQVMEKRQISLEQVLG 173
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A1I9LVF8_9PHAE (30S ribosomal protein S5, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF8_9PHAE) HSP 1 Score: 201 bits (510), Expect = 2.470e-63 Identity = 107/157 (68.15%), Postives = 130/157 (82.80%), Query Frame = 1 Query: 10 QHRIVKISRISKVVKGGKKINFRVIIVSGN-ENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 477 + R+VKISR+SKVVKGGKKI+FR +V G+ E K VGVGVGKAK++ A++KA + KN+INV I +G+TIPH+ G SKVFIRPA+ GTGVIAG SVRIVLELAGIKNIL+KQLGSNN+LNNAR+TITALK LST+ QV++ RQISLEQ+ G Sbjct: 11 EKRVVKISRVSKVVKGGKKISFRATVVVGDIEKKQVGVGVGKAKDVSTAVKKAETDGIKNVINVQIAEGKTIPHATFGIECGSKVFIRPAVPGTGVIAGGSVRIVLELAGIKNILSKQLGSNNSLNNARSTITALKSLSTVKQVMEKRQISLEQVLG 167
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: A0A2I4Q2I9_9PHAE (30S ribosomal protein S5, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I9_9PHAE) HSP 1 Score: 201 bits (510), Expect = 2.470e-63 Identity = 104/156 (66.67%), Postives = 127/156 (81.41%), Query Frame = 1 Query: 10 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQLSG 477 + R+VK+SR+SKVVKGGKKI+FR +V G++ VGVG+GKA E+ +AI+KA N+KKN+I + + GQTI HSI+G AG SKVFIRPA+ GTGVIAG SVR VLELAGIKNIL+KQLGSNNALNNARATI L+ L+T +VIK RQIS+E L G Sbjct: 12 EKRVVKVSRVSKVVKGGKKISFRATVVIGDKKNKVGVGMGKAVEVSNAIKKAETNAKKNVITITVESGQTISHSILGAAGGSKVFIRPAVPGTGVIAGGSVRSVLELAGIKNILSKQLGSNNALNNARATINGLRNLNTKAEVIKKRQISVEHLLG 167
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: B7T1W8_VAULI (30S ribosomal protein S5, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1W8_VAULI) HSP 1 Score: 192 bits (489), Expect = 7.540e-60 Identity = 99/154 (64.29%), Postives = 125/154 (81.17%), Query Frame = 1 Query: 10 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQL 471 + R+V+ISR+ KVVKGGKK++FR ++ GN+N VGVGVGKA E+ AI+KA+N+++KNLI +P+ K +TIPH+IIG G+SKV IR A GTGVIAGSS+RIVLEL G++NIL KQLG NN LNNARATI ALK L TI QV + R+ISLE+L Sbjct: 31 EQRVVQISRVVKVVKGGKKLSFRATVIIGNKNSHVGVGVGKADEVSTAIQKAVNHARKNLIQIPLTKTKTIPHNIIGIDGASKVLIRTAGPGTGVIAGSSIRIVLELVGVQNILAKQLGGNNLLNNARATIAALKGLKTIHQVAQEREISLEKL 184
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Match: UPI001FCDE024 (ribosomal protein S5 n=1 Tax=Glaucosphaera vacuolata TaxID=38265 RepID=UPI001FCDE024) HSP 1 Score: 186 bits (471), Expect = 2.540e-57 Identity = 90/154 (58.44%), Postives = 124/154 (80.52%), Query Frame = 1 Query: 10 QHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDAIRKALNNSKKNLINVPIIKGQTIPHSIIGKAGSSKVFIRPAIEGTGVIAGSSVRIVLELAGIKNILTKQLGSNNALNNARATITALKKLSTIDQVIKNRQISLEQL 471 Q ++V+I R++KVVKGGKK+NFR I+V GNE VGVGVGKA +++ A++K + ++KK++I +P+ K ++IPH + GK+GS+ V I+P+ G+GVIAGSS+R VLELAG++NIL KQLGSNN LNNARATI AL+KL T +V +NR I +EQL Sbjct: 18 QEKVVQIRRVTKVVKGGKKLNFRAIVVIGNEKDKVGVGVGKASDVIGAVKKGVADAKKHIITIPLTKYKSIPHLMYGKSGSASVLIKPSAPGSGVIAGSSIRTVLELAGVQNILAKQLGSNNPLNNARATIDALQKLRTFSEVARNRDIVVEQL 171 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1670.4527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1670.4527.1 >prot_L-elsbetiae_contig1670.4527.1 ID=prot_L-elsbetiae_contig1670.4527.1|Name=mRNA_L-elsbetiae_contig1670.4527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp MITQHRIVKISRISKVVKGGKKINFRVIIVSGNENKIVGVGVGKAKEIVDback to top mRNA from alignment at L-elsbetiae_contig1670:15687..16169- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1670.4527.1 ID=mRNA_L-elsbetiae_contig1670.4527.1|Name=mRNA_L-elsbetiae_contig1670.4527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=483bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:15687..16169- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1670:15687..16169- >mRNA_L-elsbetiae_contig1670.4527.1 ID=mRNA_L-elsbetiae_contig1670.4527.1|Name=mRNA_L-elsbetiae_contig1670.4527.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:15687..16169- (Laminarionema elsbetiae ELsaHSoW15)back to top |