prot_L-elsbetiae_contig16696.4512.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16696.4512.1
Unique Nameprot_L-elsbetiae_contig16696.4512.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length253
Homology
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: RLMD_ALTNA (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=13 Tax=Proteobacteria TaxID=1224 RepID=RLMD_ALTNA)

HSP 1 Score: 480 bits (1235), Expect = 1.700e-167
Identity = 237/253 (93.68%), Postives = 248/253 (98.02%), Query Frame = 0
Query:    1 VAIFYKPSKGKNKSNVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 253
            +AIFYKPSKGKNKSNVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARG+TLYFVDGALP ET++IKALSSNKQI+NAKVTKVNTPS HRQKPFCGVANQCGGCQLQHVEPQ ALALRDDALKSM QRKLGFNEGAWQAP+SG+RPRYRRKARLAIDARNPDKIKLGFRE+AGKNIVDI+GCPVLVE+LSQLIAPLKSAITGYASARLVGH+SLLAGENAVQVTVKHTRSLAND I
Sbjct:    1 MAIFYKPSKGKNKSNVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARGDTLYFVDGALPGETVEIKALSSNKQIVNAKVTKVNTPSEHRQKPFCGVANQCGGCQLQHVEPQEALALRDDALKSMFQRKLGFNEGAWQAPVSGNRPRYRRKARLAIDARNPDKIKLGFRENAGKNIVDIEGCPVLVESLSQLIAPLKSAITGYASARLVGHVSLLAGENAVQVTVKHTRSLANDFI 253          
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: A0A7X5LHU8_9ALTE (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Alteromonas profundi TaxID=2696062 RepID=A0A7X5LHU8_9ALTE)

HSP 1 Score: 259 bits (663), Expect = 2.330e-81
Identity = 122/215 (56.74%), Postives = 159/215 (73.95%), Query Frame = 0
Query:   39 PSVDDINAANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 253
            P  D  N A   VTID +DW+GQGVA+G+T++FV GALP ET+ IK  +SNK++ +A   +V+ PS HR KPFC VA++CGGCQLQH+E + AL+ R+ A+K MLQR+L F + AW  PISG RP YRRKARLA+DAR P+K K GFRE  GK +VDI  CPVL+  LS LIAPLK  +  + + R +GH+SLLAG+N  QVT+KHT++LA+  +
Sbjct:    7 PKGDSNNKAAAPVTIDSLDWKGQGVAKGKTMHFVSGALPGETVAIKVTNSNKKVRSAHAIRVDNPSSHRVKPFCPVASRCGGCQLQHIESEAALSFRNLAIKEMLQRQLKFADEAWHTPISGPRPAYRRKARLALDARQPEKFKCGFREQQGKAVVDIHQCPVLLPTLSNLIAPLKKVLNSHENKRFLGHVSLLAGDNVAQVTIKHTQTLASQYV 221          
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: RLMD_ALTMD (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=9 Tax=Alteromonas mediterranea TaxID=314275 RepID=RLMD_ALTMD)

HSP 1 Score: 260 bits (665), Expect = 3.580e-81
Identity = 132/262 (50.38%), Postives = 173/262 (66.03%), Query Frame = 0
Query:    1 VAIFYKPSKGKNKS---------NVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 253
            +A  +K S+ K K+         + KG  R           K+KQS       +A N A+TI  +DW GQGVARG T+YFV+GALP ET  I+ +SS K++++AK   +  PS  RQ PFC V   CGGCQLQH++   ALA RD+ALK M++R+L    G WQAP+ G RP+YRRKARLAIDARNPD IKLGFRE+    +V++D CP+LV  LS  I PL++A+ GY SAR +GHISL+AG+N  QV +KHT++L + LI
Sbjct:    1 MANLFKQSRAKQKNKTTPSQTQTSTKGSARANAQVAGLRFKKSKQSKEHNTAQDANNNAITIQELDWMGQGVARGATMYFVEGALPGETCDIEVVSSKKKVVSAKTISIQGPSELRQPPFCPVFEACGGCQLQHIDADAALAYRDNALKIMMERQLSIGSGVWQAPLVGPRPQYRRKARLAIDARNPDNIKLGFREANSNKVVNLDTCPILVNPLSTAIGPLRNALEGYDSARHIGHISLIAGDNRAQVVIKHTKALEDALI 262          
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: A0A136I170_9ALTE (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=2 Tax=unclassified Alteromonas TaxID=2614992 RepID=A0A136I170_9ALTE)

HSP 1 Score: 251 bits (641), Expect = 2.820e-77
Identity = 115/205 (56.10%), Postives = 153/205 (74.63%), Query Frame = 0
Query:   49 EAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 253
            + VTID +DW GQGV RG  +YFV+GALP+E  +I+  S  KQ++  KVT+V TPS  R  PFC +   CGGCQLQH++P  AL  RD+ALK+M+Q++LG  + AWQ P+ G+RP+YRRKARLAIDARNPDK+KLGFR +    +V+I  CP+LV+ LS LI PL  AI G+ SA+ +GHI L+AG++  QVTVKHT++L + L+
Sbjct:   73 KTVTIDSLDWMGQGVVRGNPMYFVEGALPNEVCEIEETSRKKQVVQGKVTRVVTPSNTRVAPFCSMFRTCGGCQLQHIDPATALEYRDNALKTMMQKQLGMQDAAWQLPLVGERPQYRRKARLAIDARNPDKVKLGFRAANSNKVVNITACPILVDPLSALINPLHEAIEGFDSAKFIGHIVLIAGDDRAQVTVKHTKNLESSLL 277          
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: UPI0018E86854 (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Alteromonas sp. IB21 TaxID=2779369 RepID=UPI0018E86854)

HSP 1 Score: 248 bits (634), Expect = 1.740e-76
Identity = 116/205 (56.59%), Postives = 152/205 (74.15%), Query Frame = 0
Query:   49 EAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 253
            + VTID +DW G GV RG  + FV+GAL  ET  I+ LSS K +INAK  K++TPS  RQ PFC V + CGGCQLQH++P  ALA RD ALK M++R+L      WQ+P+ G RP+YRRKARLAIDARNPD+IKLGFR S+   +V+++ CP+LV+ LS LI PL+ A+TG+ SAR +GHISL+AG+N   + +KHT++L  +LI
Sbjct:   56 DTVTIDDLDWMGNGVVRGNPMLFVEGALVGETCDIEVLSSKKNVINAKAKKIHTPSEARQAPFCSVFDACGGCQLQHIKPDAALAQRDLALKVMMERQLSMKSDVWQSPLVGPRPQYRRKARLAIDARNPDQIKLGFRGSSSNKVVNVETCPILVDPLSTLIGPLRDALTGFESARHIGHISLIAGDNTSHLVLKHTKALEAELI 260          
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: A0A6T9XY16_ALTMA (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=3 Tax=Alteromonas TaxID=226 RepID=A0A6T9XY16_ALTMA)

HSP 1 Score: 247 bits (630), Expect = 1.330e-75
Identity = 125/262 (47.71%), Postives = 172/262 (65.65%), Query Frame = 0
Query:    1 VAIFYKPSKGKNKSNVKGRVRGAG-----SGEKQ----HIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 253
            +A  +K S+ K K     R+ G G     S   Q       KTK +  +    N++   VTI+ +DW G GV RG  + FV+GAL  ET  I+ LSS K++INAK T +  PS  RQ PFC V + CGGCQLQH++P  AL  RD+ALK M++R+L    G WQ+P+ G RP+YRRKARLAIDARNP++IKLGFRE+    + ++D CP+LV+ LS +I PL++A+TG+ SAR +GHISL+AG+N   + +KH ++L  +LI
Sbjct:   27 LANLFKQSRSKQKGTASSRLSGNGKKGNASANAQVAGLRFGKTKNASQASKKANSST--VTIEDVDWMGHGVVRGNPIMFVEGALVGETCDIEVLSSKKKVINAKATNIQLPSEARQAPFCPVFDSCGGCQLQHIKPDTALEQRDNALKVMMERQLAMKAGVWQSPLVGPRPQYRRKARLAIDARNPNQIKLGFREANSNKVTNVDSCPILVDPLSNIIGPLQNALTGFESARHIGHISLIAGDNTSHLVIKHIKALEAELI 286          
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: A0A640QHN1_9ALTE (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=2 Tax=Alteromonas TaxID=226 RepID=A0A640QHN1_9ALTE)

HSP 1 Score: 244 bits (624), Expect = 5.440e-75
Identity = 115/207 (55.56%), Postives = 153/207 (73.91%), Query Frame = 0
Query:   47 ANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 253
            A + VTID +DW G GVARG  + FV+GAL  ET  I+ALSS K++INAK  K++ PS  RQ PFC V + CGGCQLQH++P  ALA RD ALK M++R L      WQA + G RP+YRRKARLAIDARNP+ IKLGFRE+   N+++++ CP+LV+ LS +I PL+ A+TG+ SAR +GH+SL+AG+N   + +KHT++L  +LI
Sbjct:   54 AIDTVTIDDLDWMGNGVARGNPMVFVEGALVGETCDIEALSSKKKVINAKAKKIHAPSEVRQVPFCPVFDACGGCQLQHIKPDAALAQRDLALKVMMERHLAMKPHVWQASLEGPRPQYRRKARLAIDARNPNLIKLGFREANSNNVINVETCPILVDPLSTIIGPLRDALTGFESARHIGHVSLVAGDNTSHLVIKHTKALEAELI 260          
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: K0CXC7_ALTMS (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=30 Tax=Alteromonadaceae TaxID=72275 RepID=K0CXC7_ALTMS)

HSP 1 Score: 244 bits (622), Expect = 1.080e-74
Identity = 110/203 (54.19%), Postives = 153/203 (75.37%), Query Frame = 0
Query:   51 VTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 253
            VTI+ +DW G GV RG  + FV+GAL  ET  I+ +SS K++INAK T +++PS  RQ PFC V + CGGCQLQH++P  AL  RD AL+ M++R L      WQAP++G RP+YRRKARLAIDARNP++IKLGFRE+   N+++++ CP+LV+ LS+LI PL+ A++G+ SAR +GHISL+AG+N   + +KHT++L  +LI
Sbjct:   58 VTIEDLDWMGNGVVRGNPMVFVEGALVGETCDIEVVSSKKKVINAKATNIHSPSDERQAPFCPVFDACGGCQLQHIKPDAALVQRDRALRVMMERHLAMKPNVWQAPLAGPRPQYRRKARLAIDARNPNQIKLGFREANSSNVINVETCPILVDPLSKLIGPLRDALSGFESARHIGHISLIAGDNTSHLVIKHTKALEAELI 260          
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: A0A6N9TQE5_9ALTE (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=4 Tax=Alteromonas TaxID=226 RepID=A0A6N9TQE5_9ALTE)

HSP 1 Score: 243 bits (620), Expect = 1.540e-74
Identity = 112/208 (53.85%), Postives = 151/208 (72.60%), Query Frame = 0
Query:   45 NAANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDL 252
            N A   + I+ +DW GQG+AR   ++FV+GALP ET  +  L + K ++NAK T +  PS  R  PFC V +QCGGCQLQH++ Q AL  R++ALKSM+ R+L   +G WQAP++GD+P YRRKARLA+DAR  DK+KLGFR  A  +IVDI  CPVLV+ LS+LIAPL++ ++   S R +GHI LLAG+N  QVT+KHT++L+ +L
Sbjct:   48 NQAQSPLLIESLDWMGQGIARATPVHFVEGALPGETCDVSVLHAKKNVVNAKATTITHPSSMRATPFCPVFDQCGGCQLQHIDAQHALTERNNALKSMMVRQLAMEDGVWQAPLAGDKPAYRRKARLALDARRTDKLKLGFRSQASSDIVDITSCPVLVDELSRLIAPLRAVLSRCESTRFIGHIGLLAGDNVCQVTIKHTKALSPEL 255          
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: UPI00044EB331 (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Alteromonas sp. ALT199 TaxID=1298865 RepID=UPI00044EB331)

HSP 1 Score: 243 bits (620), Expect = 2.160e-74
Identity = 110/206 (53.40%), Postives = 153/206 (74.27%), Query Frame = 0
Query:   48 NEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 253
            +  VTI+ +DW G GV RG  + FVDGAL  ET  I+ L+S K++INAK   +++PS  RQ PFC V + CGGCQLQH++P  AL LRD+ALK M++R+L      WQAP+ G RP+YRRKARLAIDARNP++IKLGFRE+   N+V ++ CP+LV+ LS +I PL++A+TG+ +AR +GH+SL+AG+    + +KHT++L  +LI
Sbjct:   55 SNTVTIEDIDWMGHGVVRGNPMMFVDGALVGETCDIEVLTSKKKVINAKAINIHSPSNARQAPFCPVFDSCGGCQLQHIQPDAALKLRDNALKVMMERQLAMKADVWQAPLVGPRPQYRRKARLAIDARNPNQIKLGFREANSSNVVSVETCPILVDPLSNIIGPLRNALTGFETARHIGHVSLIAGDKISHLVIKHTKALEAELI 260          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RLMD_ALTNA1.700e-16793.6823S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A7X5LHU8_9ALTE2.330e-8156.7423S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
RLMD_ALTMD3.580e-8150.3823S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A136I170_9ALTE2.820e-7756.1023S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]
UPI0018E868541.740e-7656.5923S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A6T9XY16_ALTMA1.330e-7547.7123S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A640QHN1_9ALTE5.440e-7555.5623S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
K0CXC7_ALTMS1.080e-7454.1923S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A6N9TQE5_9ALTE1.540e-7453.8523S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
UPI00044EB3312.160e-7453.4023S rRNA (uracil(1939)-C(5))-methyltransferase Rlm... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 39..118
e-value: 1.7E-16
score: 62.0
NoneNo IPR availableGENE3D3.40.50.150coord: 119..165
e-value: 1.3E-22
score: 82.7
NoneNo IPR availableGENE3D3.40.1350.30coord: 166..249
e-value: 1.3E-22
score: 82.7
NoneNo IPR availablePANTHERPTHR11061:SF4723S RRNA (URACIL(1939)-C(5))-METHYLTRANSFERASE RLMDcoord: 49..249
IPR010280(Uracil-5)-methyltransferase familyPANTHERPTHR11061RNA M5U METHYLTRANSFERASEcoord: 49..249
IPR010280(Uracil-5)-methyltransferase familyPROSITEPS51687SAM_MT_RNA_M5Ucoord: 119..253
score: 20.294
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 51..104
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 107..246

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16696contigL-elsbetiae_contig16696:1..759 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16696.4512.1mRNA_L-elsbetiae_contig16696.4512.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16696 1..759 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16696.4512.1 ID=prot_L-elsbetiae_contig16696.4512.1|Name=mRNA_L-elsbetiae_contig16696.4512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=253bp
VAIFYKPSKGKNKSNVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEA
VTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKV
NTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFN
EGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCP
VLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLAN
DLI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010280U5_MeTrfase_fam
IPR012340NA-bd_OB-fold
IPR029063SAM-dependent_MTases