mRNA_L-elsbetiae_contig16696.4512.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: RLMD_ALTNA (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=13 Tax=Proteobacteria TaxID=1224 RepID=RLMD_ALTNA) HSP 1 Score: 480 bits (1235), Expect = 1.700e-167 Identity = 237/253 (93.68%), Postives = 248/253 (98.02%), Query Frame = 1 Query: 1 VAIFYKPSKGKNKSNVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 759 +AIFYKPSKGKNKSNVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARG+TLYFVDGALP ET++IKALSSNKQI+NAKVTKVNTPS HRQKPFCGVANQCGGCQLQHVEPQ ALALRDDALKSM QRKLGFNEGAWQAP+SG+RPRYRRKARLAIDARNPDKIKLGFRE+AGKNIVDI+GCPVLVE+LSQLIAPLKSAITGYASARLVGH+SLLAGENAVQVTVKHTRSLAND I Sbjct: 1 MAIFYKPSKGKNKSNVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARGDTLYFVDGALPGETVEIKALSSNKQIVNAKVTKVNTPSEHRQKPFCGVANQCGGCQLQHVEPQEALALRDDALKSMFQRKLGFNEGAWQAPVSGNRPRYRRKARLAIDARNPDKIKLGFRENAGKNIVDIEGCPVLVESLSQLIAPLKSAITGYASARLVGHVSLLAGENAVQVTVKHTRSLANDFI 253
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: A0A7X5LHU8_9ALTE (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Alteromonas profundi TaxID=2696062 RepID=A0A7X5LHU8_9ALTE) HSP 1 Score: 259 bits (663), Expect = 2.330e-81 Identity = 122/215 (56.74%), Postives = 159/215 (73.95%), Query Frame = 1 Query: 115 PSVDDINAANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 759 P D N A VTID +DW+GQGVA+G+T++FV GALP ET+ IK +SNK++ +A +V+ PS HR KPFC VA++CGGCQLQH+E + AL+ R+ A+K MLQR+L F + AW PISG RP YRRKARLA+DAR P+K K GFRE GK +VDI CPVL+ LS LIAPLK + + + R +GH+SLLAG+N QVT+KHT++LA+ + Sbjct: 7 PKGDSNNKAAAPVTIDSLDWKGQGVAKGKTMHFVSGALPGETVAIKVTNSNKKVRSAHAIRVDNPSSHRVKPFCPVASRCGGCQLQHIESEAALSFRNLAIKEMLQRQLKFADEAWHTPISGPRPAYRRKARLALDARQPEKFKCGFREQQGKAVVDIHQCPVLLPTLSNLIAPLKKVLNSHENKRFLGHVSLLAGDNVAQVTIKHTQTLASQYV 221
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: RLMD_ALTMD (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=9 Tax=Alteromonas mediterranea TaxID=314275 RepID=RLMD_ALTMD) HSP 1 Score: 260 bits (665), Expect = 3.580e-81 Identity = 132/262 (50.38%), Postives = 173/262 (66.03%), Query Frame = 1 Query: 1 VAIFYKPSKGKNKS---------NVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 759 +A +K S+ K K+ + KG R K+KQS +A N A+TI +DW GQGVARG T+YFV+GALP ET I+ +SS K++++AK + PS RQ PFC V CGGCQLQH++ ALA RD+ALK M++R+L G WQAP+ G RP+YRRKARLAIDARNPD IKLGFRE+ +V++D CP+LV LS I PL++A+ GY SAR +GHISL+AG+N QV +KHT++L + LI Sbjct: 1 MANLFKQSRAKQKNKTTPSQTQTSTKGSARANAQVAGLRFKKSKQSKEHNTAQDANNNAITIQELDWMGQGVARGATMYFVEGALPGETCDIEVVSSKKKVVSAKTISIQGPSELRQPPFCPVFEACGGCQLQHIDADAALAYRDNALKIMMERQLSIGSGVWQAPLVGPRPQYRRKARLAIDARNPDNIKLGFREANSNKVVNLDTCPILVNPLSTAIGPLRNALEGYDSARHIGHISLIAGDNRAQVVIKHTKALEDALI 262
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: A0A136I170_9ALTE (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=2 Tax=unclassified Alteromonas TaxID=2614992 RepID=A0A136I170_9ALTE) HSP 1 Score: 251 bits (641), Expect = 2.820e-77 Identity = 115/205 (56.10%), Postives = 153/205 (74.63%), Query Frame = 1 Query: 145 EAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 759 + VTID +DW GQGV RG +YFV+GALP+E +I+ S KQ++ KVT+V TPS R PFC + CGGCQLQH++P AL RD+ALK+M+Q++LG + AWQ P+ G+RP+YRRKARLAIDARNPDK+KLGFR + +V+I CP+LV+ LS LI PL AI G+ SA+ +GHI L+AG++ QVTVKHT++L + L+ Sbjct: 73 KTVTIDSLDWMGQGVVRGNPMYFVEGALPNEVCEIEETSRKKQVVQGKVTRVVTPSNTRVAPFCSMFRTCGGCQLQHIDPATALEYRDNALKTMMQKQLGMQDAAWQLPLVGERPQYRRKARLAIDARNPDKVKLGFRAANSNKVVNITACPILVDPLSALINPLHEAIEGFDSAKFIGHIVLIAGDDRAQVTVKHTKNLESSLL 277
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: UPI0018E86854 (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Alteromonas sp. IB21 TaxID=2779369 RepID=UPI0018E86854) HSP 1 Score: 248 bits (634), Expect = 1.740e-76 Identity = 116/205 (56.59%), Postives = 152/205 (74.15%), Query Frame = 1 Query: 145 EAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 759 + VTID +DW G GV RG + FV+GAL ET I+ LSS K +INAK K++TPS RQ PFC V + CGGCQLQH++P ALA RD ALK M++R+L WQ+P+ G RP+YRRKARLAIDARNPD+IKLGFR S+ +V+++ CP+LV+ LS LI PL+ A+TG+ SAR +GHISL+AG+N + +KHT++L +LI Sbjct: 56 DTVTIDDLDWMGNGVVRGNPMLFVEGALVGETCDIEVLSSKKNVINAKAKKIHTPSEARQAPFCSVFDACGGCQLQHIKPDAALAQRDLALKVMMERQLSMKSDVWQSPLVGPRPQYRRKARLAIDARNPDQIKLGFRGSSSNKVVNVETCPILVDPLSTLIGPLRDALTGFESARHIGHISLIAGDNTSHLVLKHTKALEAELI 260
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: A0A6T9XY16_ALTMA (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=3 Tax=Alteromonas TaxID=226 RepID=A0A6T9XY16_ALTMA) HSP 1 Score: 247 bits (630), Expect = 1.330e-75 Identity = 125/262 (47.71%), Postives = 172/262 (65.65%), Query Frame = 1 Query: 1 VAIFYKPSKGKNKSNVKGRVRGAG-----SGEKQ----HIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 759 +A +K S+ K K R+ G G S Q KTK + + N++ VTI+ +DW G GV RG + FV+GAL ET I+ LSS K++INAK T + PS RQ PFC V + CGGCQLQH++P AL RD+ALK M++R+L G WQ+P+ G RP+YRRKARLAIDARNP++IKLGFRE+ + ++D CP+LV+ LS +I PL++A+TG+ SAR +GHISL+AG+N + +KH ++L +LI Sbjct: 27 LANLFKQSRSKQKGTASSRLSGNGKKGNASANAQVAGLRFGKTKNASQASKKANSST--VTIEDVDWMGHGVVRGNPIMFVEGALVGETCDIEVLSSKKKVINAKATNIQLPSEARQAPFCPVFDSCGGCQLQHIKPDTALEQRDNALKVMMERQLAMKAGVWQSPLVGPRPQYRRKARLAIDARNPNQIKLGFREANSNKVTNVDSCPILVDPLSNIIGPLQNALTGFESARHIGHISLIAGDNTSHLVIKHIKALEAELI 286
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: A0A640QHN1_9ALTE (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=2 Tax=Alteromonas TaxID=226 RepID=A0A640QHN1_9ALTE) HSP 1 Score: 244 bits (624), Expect = 5.440e-75 Identity = 115/207 (55.56%), Postives = 153/207 (73.91%), Query Frame = 1 Query: 139 ANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 759 A + VTID +DW G GVARG + FV+GAL ET I+ALSS K++INAK K++ PS RQ PFC V + CGGCQLQH++P ALA RD ALK M++R L WQA + G RP+YRRKARLAIDARNP+ IKLGFRE+ N+++++ CP+LV+ LS +I PL+ A+TG+ SAR +GH+SL+AG+N + +KHT++L +LI Sbjct: 54 AIDTVTIDDLDWMGNGVARGNPMVFVEGALVGETCDIEALSSKKKVINAKAKKIHAPSEVRQVPFCPVFDACGGCQLQHIKPDAALAQRDLALKVMMERHLAMKPHVWQASLEGPRPQYRRKARLAIDARNPNLIKLGFREANSNNVINVETCPILVDPLSTIIGPLRDALTGFESARHIGHVSLVAGDNTSHLVIKHTKALEAELI 260
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: K0CXC7_ALTMS (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=30 Tax=Alteromonadaceae TaxID=72275 RepID=K0CXC7_ALTMS) HSP 1 Score: 244 bits (622), Expect = 1.080e-74 Identity = 110/203 (54.19%), Postives = 153/203 (75.37%), Query Frame = 1 Query: 151 VTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 759 VTI+ +DW G GV RG + FV+GAL ET I+ +SS K++INAK T +++PS RQ PFC V + CGGCQLQH++P AL RD AL+ M++R L WQAP++G RP+YRRKARLAIDARNP++IKLGFRE+ N+++++ CP+LV+ LS+LI PL+ A++G+ SAR +GHISL+AG+N + +KHT++L +LI Sbjct: 58 VTIEDLDWMGNGVVRGNPMVFVEGALVGETCDIEVVSSKKKVINAKATNIHSPSDERQAPFCPVFDACGGCQLQHIKPDAALVQRDRALRVMMERHLAMKPNVWQAPLAGPRPQYRRKARLAIDARNPNQIKLGFREANSSNVINVETCPILVDPLSKLIGPLRDALSGFESARHIGHISLIAGDNTSHLVIKHTKALEAELI 260
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: A0A6N9TQE5_9ALTE (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=4 Tax=Alteromonas TaxID=226 RepID=A0A6N9TQE5_9ALTE) HSP 1 Score: 243 bits (620), Expect = 1.540e-74 Identity = 112/208 (53.85%), Postives = 151/208 (72.60%), Query Frame = 1 Query: 133 NAANEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDL 756 N A + I+ +DW GQG+AR ++FV+GALP ET + L + K ++NAK T + PS R PFC V +QCGGCQLQH++ Q AL R++ALKSM+ R+L +G WQAP++GD+P YRRKARLA+DAR DK+KLGFR A +IVDI CPVLV+ LS+LIAPL++ ++ S R +GHI LLAG+N QVT+KHT++L+ +L Sbjct: 48 NQAQSPLLIESLDWMGQGIARATPVHFVEGALPGETCDVSVLHAKKNVVNAKATTITHPSSMRATPFCPVFDQCGGCQLQHIDAQHALTERNNALKSMMVRQLAMEDGVWQAPLAGDKPAYRRKARLALDARRTDKLKLGFRSQASSDIVDITSCPVLVDELSRLIAPLRAVLSRCESTRFIGHIGLLAGDNVCQVTIKHTKALSPEL 255
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Match: UPI00044EB331 (23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Alteromonas sp. ALT199 TaxID=1298865 RepID=UPI00044EB331) HSP 1 Score: 243 bits (620), Expect = 2.160e-74 Identity = 110/206 (53.40%), Postives = 153/206 (74.27%), Query Frame = 1 Query: 142 NEAVTIDGMDWQGQGVARGETLYFVDGALPDETIQIKALSSNKQIINAKVTKVNTPSVHRQKPFCGVANQCGGCQLQHVEPQVALALRDDALKSMLQRKLGFNEGAWQAPISGDRPRYRRKARLAIDARNPDKIKLGFRESAGKNIVDIDGCPVLVEALSQLIAPLKSAITGYASARLVGHISLLAGENAVQVTVKHTRSLANDLI 759 + VTI+ +DW G GV RG + FVDGAL ET I+ L+S K++INAK +++PS RQ PFC V + CGGCQLQH++P AL LRD+ALK M++R+L WQAP+ G RP+YRRKARLAIDARNP++IKLGFRE+ N+V ++ CP+LV+ LS +I PL++A+TG+ +AR +GH+SL+AG+ + +KHT++L +LI Sbjct: 55 SNTVTIEDIDWMGHGVVRGNPMMFVDGALVGETCDIEVLTSKKKVINAKAINIHSPSNARQAPFCPVFDSCGGCQLQHIQPDAALKLRDNALKVMMERQLAMKADVWQAPLVGPRPQYRRKARLAIDARNPNQIKLGFREANSSNVVSVETCPILVDPLSNIIGPLRNALTGFETARHIGHVSLIAGDKISHLVIKHTKALEAELI 260 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16696.4512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16696.4512.1 >prot_L-elsbetiae_contig16696.4512.1 ID=prot_L-elsbetiae_contig16696.4512.1|Name=mRNA_L-elsbetiae_contig16696.4512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=253bp VAIFYKPSKGKNKSNVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEAback to top mRNA from alignment at L-elsbetiae_contig16696:1..759- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig16696.4512.1 ID=mRNA_L-elsbetiae_contig16696.4512.1|Name=mRNA_L-elsbetiae_contig16696.4512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=759bp|location=Sequence derived from alignment at L-elsbetiae_contig16696:1..759- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig16696:1..759- >mRNA_L-elsbetiae_contig16696.4512.1 ID=mRNA_L-elsbetiae_contig16696.4512.1|Name=mRNA_L-elsbetiae_contig16696.4512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1518bp|location=Sequence derived from alignment at L-elsbetiae_contig16696:1..759- (Laminarionema elsbetiae ELsaHSoW15)back to top |