prot_L-elsbetiae_contig1620.4255.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1620.4255.1
Unique Name	prot_L-elsbetiae_contig1620.4255.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	115

Homology

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BLAST of mRNA_L-elsbetiae_contig1620.4255.1 vs. uniprot
Match: A0A6H5K2Z7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.410e-34
Identity = 66/121 (54.55%), Postives = 87/121 (71.90%), Query Frame = 0

Query:    1 GKYSKTESQIVVDAARQYAAVNSVTVEQLCGEGAM----KGAWPAIANCLTNRS--SIFRHGVRKLKGLKAGPWSTAEVDTLRSLVKKHGQKWSVIEKEMDRPAGACRDKFRDIVPDAQQG 115
            GKYS TES+IVVDA + YA+ N++TVE LC +G+     K AW +IANCL +RS  SI+RHG+R+L G+K GPW+  EV  L+ LV  HG KWS I K++ R A ACRDK R+++P  Q+G
Sbjct:   97 GKYSNTESKIVVDAIKSYASANAITVESLCQDGSRSVGSKRAWLSIANCLPDRSVQSIYRHGIRQLHGMKMGPWTDEEVAQLKLLVSTHGNKWSEIGKKVGRSADACRDKSRELIPTPQEG 217

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BLAST of mRNA_L-elsbetiae_contig1620.4255.1 vs. uniprot
Match: D8LNL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL6_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.250e-31
Identity = 63/121 (52.07%), Postives = 85/121 (70.25%), Query Frame = 0

Query:    1 GKYSKTESQIVVDAARQYAAVNSVTVEQLCGEGAM----KGAWPAIANCLTNRS--SIFRHGVRKLKGLKAGPWSTAEVDTLRSLVKKHGQKWSVIEKEMDRPAGACRDKFRDIVPDAQQG 115
            GKYS TES+IVVDA + YA+ N++TV+ LC +G+     K AW +IANCL +RS  SI+RHG+R+L G K G W+  EV  L+ LV  HG+KWS I K++ R A ACRDK R+++   Q+G
Sbjct:    4 GKYSNTESKIVVDAIKSYASANAITVDSLCQDGSRSVGSKRAWLSIANCLPDRSVQSIYRHGIRQLHGRKMGAWTDEEVAQLKLLVSTHGKKWSEIGKKVGRSADACRDKSRELISTPQEG 124

[Close]

BLAST of mRNA_L-elsbetiae_contig1620.4255.1 vs. uniprot
Match: A0A7S4R0S1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R0S1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.200e-8
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query:   39 WPAIANCLTNRS--SIFRHGVRKLKGLKAGPWSTAEVDTLRSLVKKHGQKWSVIEKEMDRPAGACRDKFRDIVPD 111
            W  IA    +++  SI+R  ++ L   K GPWS  EV  L  +V+KHG +W++I K ++R    C  K+R+I  D
Sbjct:  471 WKGIAKAFPDKTLGSIYRVAIKALNPHKHGPWSEDEVARLHYIVQKHGPRWTIISKSLNRSTHDCAQKYREINSD 545

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1620.4255.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1620.4255.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5K2Z7_9PHAE	1.410e-34	54.55	MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D8LNL6_ECTSI	2.250e-31	52.07	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S4R0S1_9STRA	5.200e-8	37.33	Hypothetical protein (Fragment) n=2 Tax=Ditylum br...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 64..111 e-value: 2.7E-6 score: 36.9
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 68..113 e-value: 2.4E-9 score: 37.3
None	No IPR available	GENE3D	1.10.10.60		coord: 70..108 e-value: 5.1E-10 score: 40.8
None	No IPR available	PANTHER	PTHR46380	FAMILY NOT NAMED	coord: 1..109
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 60..113 score: 13.478
IPR017877	Myb-like domain	PROSITE	PS50090	MYB_LIKE	coord: 1..50 score: 4.658
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 62..109

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1620	contig	L-elsbetiae_contig1620:231..3680 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1620.4255.1	mRNA_L-elsbetiae_contig1620.4255.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1620 231..3680 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1620.4255.1 ID=prot_L-elsbetiae_contig1620.4255.1|Name=mRNA_L-elsbetiae_contig1620.4255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
GKYSKTESQIVVDAARQYAAVNSVTVEQLCGEGAMKGAWPAIANCLTNRS
SIFRHGVRKLKGLKAGPWSTAEVDTLRSLVKKHGQKWSVIEKEMDRPAGA
CRDKFRDIVPDAQQG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR017930	Myb_dom
IPR017877	Myb-like_dom
IPR009057	Homeobox-like_sf