mRNA_L-elsbetiae_contig1620.4255.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1620.4255.1
Unique NamemRNA_L-elsbetiae_contig1620.4255.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1620.4255.1 vs. uniprot
Match: A0A6H5K2Z7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.410e-34
Identity = 66/121 (54.55%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:    1 GKYSKTESQIVVDAARQYAAVNSVTVEQLCGEGAM----KGAWPAIANCLTNRS--SIFRHGVRKLKGLKAGPWSTAEVDTLRSLVKKHGQKWSVIEKEMDRPAGACRDKFRDIVPDAQQG 345
            GKYS TES+IVVDA + YA+ N++TVE LC +G+     K AW +IANCL +RS  SI+RHG+R+L G+K GPW+  EV  L+ LV  HG KWS I K++ R A ACRDK R+++P  Q+G
Sbjct:   97 GKYSNTESKIVVDAIKSYASANAITVESLCQDGSRSVGSKRAWLSIANCLPDRSVQSIYRHGIRQLHGMKMGPWTDEEVAQLKLLVSTHGNKWSEIGKKVGRSADACRDKSRELIPTPQEG 217
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BLAST of mRNA_L-elsbetiae_contig1620.4255.1 vs. uniprot
Match: D8LNL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL6_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.250e-31
Identity = 63/121 (52.07%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:    1 GKYSKTESQIVVDAARQYAAVNSVTVEQLCGEGAM----KGAWPAIANCLTNRS--SIFRHGVRKLKGLKAGPWSTAEVDTLRSLVKKHGQKWSVIEKEMDRPAGACRDKFRDIVPDAQQG 345
            GKYS TES+IVVDA + YA+ N++TV+ LC +G+     K AW +IANCL +RS  SI+RHG+R+L G K G W+  EV  L+ LV  HG+KWS I K++ R A ACRDK R+++   Q+G
Sbjct:    4 GKYSNTESKIVVDAIKSYASANAITVDSLCQDGSRSVGSKRAWLSIANCLPDRSVQSIYRHGIRQLHGRKMGAWTDEEVAQLKLLVSTHGKKWSEIGKKVGRSADACRDKSRELISTPQEG 124
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BLAST of mRNA_L-elsbetiae_contig1620.4255.1 vs. uniprot
Match: A0A7S4R0S1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R0S1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.200e-8
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:  115 WPAIANCLTNRS--SIFRHGVRKLKGLKAGPWSTAEVDTLRSLVKKHGQKWSVIEKEMDRPAGACRDKFRDIVPD 333
            W  IA    +++  SI+R  ++ L   K GPWS  EV  L  +V+KHG +W++I K ++R    C  K+R+I  D
Sbjct:  471 WKGIAKAFPDKTLGSIYRVAIKALNPHKHGPWSEDEVARLHYIVQKHGPRWTIISKSLNRSTHDCAQKYREINSD 545
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1620.4255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K2Z7_9PHAE1.410e-3454.55MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LNL6_ECTSI2.250e-3152.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4R0S1_9STRA5.200e-837.33Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1620contigL-elsbetiae_contig1620:231..3680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue6.9e-27
Seed eggNOG ortholog2880.D8LNL6
KEGG koko:K15225
KEGG Pathwayko04918,map04918
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0051@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-08_006660.1
Exons4
Model size345
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1620.4255.1prot_L-elsbetiae_contig1620.4255.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1620 231..3680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.6334178-CDS-L-elsbetiae_contig1620:230..3111622815669.6334178-CDS-L-elsbetiae_contig1620:230..311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1620 231..311 +
1691683027.0490086-CDS-L-elsbetiae_contig1620:230..3111691683027.0490086-CDS-L-elsbetiae_contig1620:230..311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1620 231..311 +
1622815669.6464715-CDS-L-elsbetiae_contig1620:1331..14001622815669.6464715-CDS-L-elsbetiae_contig1620:1331..1400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1620 1332..1400 +
1691683027.0615432-CDS-L-elsbetiae_contig1620:1331..14001691683027.0615432-CDS-L-elsbetiae_contig1620:1331..1400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1620 1332..1400 +
1622815669.6573582-CDS-L-elsbetiae_contig1620:2439..25261622815669.6573582-CDS-L-elsbetiae_contig1620:2439..2526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1620 2440..2526 +
1691683027.069936-CDS-L-elsbetiae_contig1620:2439..25261691683027.069936-CDS-L-elsbetiae_contig1620:2439..2526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1620 2440..2526 +
1622815669.6757104-CDS-L-elsbetiae_contig1620:3572..36801622815669.6757104-CDS-L-elsbetiae_contig1620:3572..3680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1620 3573..3680 +
1691683027.078483-CDS-L-elsbetiae_contig1620:3572..36801691683027.078483-CDS-L-elsbetiae_contig1620:3572..3680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1620 3573..3680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1620.4255.1

>prot_L-elsbetiae_contig1620.4255.1 ID=prot_L-elsbetiae_contig1620.4255.1|Name=mRNA_L-elsbetiae_contig1620.4255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
GKYSKTESQIVVDAARQYAAVNSVTVEQLCGEGAMKGAWPAIANCLTNRS
SIFRHGVRKLKGLKAGPWSTAEVDTLRSLVKKHGQKWSVIEKEMDRPAGA
CRDKFRDIVPDAQQG
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mRNA from alignment at L-elsbetiae_contig1620:231..3680+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1620.4255.1 ID=mRNA_L-elsbetiae_contig1620.4255.1|Name=mRNA_L-elsbetiae_contig1620.4255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3450bp|location=Sequence derived from alignment at L-elsbetiae_contig1620:231..3680+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAAATACAGCAAGACCGAGTCTCAGATTGTGGTGGACGCTGCGAGGCA
ATACGCTGCCGTCAACTCCGTTACCGTGGAGGTGAGGTACAGCAGTATGC
GGTCAACATGACGGTGAAACGACGCTATTGTGGCGGGTGCGCCGTGTCGG
TTTCGTCTCCTTGCTACTCCTACATAGCTTGCCCCAACCAAGCCACGAGG
TACACAGATGCTCTGTGCGGTATGCGCTATTGCATGATATAGCATGCCAG
TAGGACGGCTTAGGGTTAGGGTTAGCGTTATAGGGTTAGAGTTAGCGTTA
GCGTTAGGGTTAGCGTTAGCGTTAGCGACGTTGGCAACCAGGCGTTGATG
TATGTACATGCTGATGTCTGCCTGTCGGTCGCATGTTATGTGCCTACGTT
TTTGGTGCATCGCCGCTCACGGGTTTTATCCCTTCGCTGAACACCCTTTT
TCCGGGTAGGGCAGACAGCAGCGTCTTGTCCCGTTCTTTCCTTGCGCCGT
ACAATAACCGTACCATATAACCAGATTACCAGAGTATCTGCGACTTGAAG
TTTTAGCCCAGAGCTTTGCACCATGATCGATGGGGTGACTCGGGCTTTAT
TTTTTTTGCTTCAAACTGTGCACGGTGCCTTCACGGTGACAAGGATAGGC
AGGCCAGCTGCTGTAGATTTGTACTACTTTTCGTTGGGTGCTTAGAAGTA
TTGGATTAGCGCGAGCACAGAGGTGAAGGCATATTTCATCTCCACGCGCT
ATTTAGACAGCCTCACCGAGCAAGCTGCAGGCAAGTATGTAGTATATATA
TACCAGAAATGCAGTACTATACAGCAGTACACAAATATGCTATAAATAGC
CCGTGGTTGTGCAACGGGCACGGGGACCGCCAACACCAACACTGTTTTCG
CAAAGTGAGATGGATTGGCACACAACTTGTATGGGCTCTTCTGTTGCATG
GCATGTCCACCTGCCGCAGTCTCTTACTCCTTCCCCGTCTCCATGGACGT
ACGTGAGCATGGACACTTATGGACTGATAAAACTGACCGGCCGATCGCCC
CCACGGTTTTCGTGCGTTGCTCTGTGTGCTCCAATTGATTAATCAATTCA
GCAACTATGCGGAGAGGGGGCTATGAAGGGGGCGTGGCCTGCCATCGCAA
ACTGCCTGACGAATAGGAGCGTTCAGGCAAGTCAACCATGATGCATGCCA
TTGTACCCGTGCCTGCTGCTGCCGCTGCTGCTGCCGCTGCTGCCGCTGAT
GCTGCTGCTGATGCTGCTGCTGATGGTAGACCTACCGCTAGCGTTGCAGA
GGTGCGCTCCCGAGCCAGTGGCAACACTATCTGCACGGGGTCGTGCAATA
TCTACCTCTAATTGAGCTCCGGTTCTCTAACTGTAGCTGTATTTAGCTCT
ACCAAGGAACGAACCGCGTATAGCTGTACTGTACTGTCTGTGTTGTGCTG
CTGCCAGTCTTGCCACTGTAAGGGCATCTTTCCCCTCGAAAGTGCACTCA
TGAAATCCTCGTTAAAATGAGGGGAATACCTCCATCCACGATGCTTTGTG
TCTTATCGTGTCTCATCTCGCACACAACCATGACCCGTTCGGCGCCTCTC
ATCCCCGACACCTCCACACAAAACCACTCAAACCACGCGGACATGCCTTG
GCTAAGTGCTCCTTTGTTCTCTCATCTTAGGGTTAGGGCTCTTTAGGGTA
CTTTTTTTTTTTGTATCCCCTGTTGGTGGGCGGTATAATCGGGGGGAGGA
CTATGTAGACCTGTGCGGGCCTGGCCGGTGAGAACCCGGCGCGGAACCCC
CCGGCTTTGTTGGGGTACCAAGATAGTGGTGTTGGCTGTTCCAGTTTTTT
TTTACCTCACATAGCGTGTAGAGGGGAGCGAAGGGCTCCAGATTCGATAT
CTATTTTATTATTGCTTTGCTGGCCCTTCGAGTCCATTTCATTTTTCGTG
TACCTTTTCTTGGGTATAAGTTAGCCTGTGACCACGGGAACTGACTGCAT
CAAGTGTTGGAGTAGTACGGACATTGAGAGGTACTGGATGGAGAGATCGG
AATGATTTTTAATGTGAAGACAACTACATACACATACATACTCTAACCCC
TGACTAATTGTTTCTTTGTTCTCCTATCTTAGGGCTAACCCTAAACCTGA
CCCTAACCGTTACCCTTGACTAAGTGTTCCTTTGTTCTCTGATCTCCAAA
CAATCTCAGTCTATCTTTCGTCATGGGGTTAGGAAACTCAAAGGCCTCAA
GGCGGGTCCGTGGAGCACGGCCGAAGTCGACACTCTACGGTCTTTGGTCA
GTGCAACTGTTGTCAGGAGCGTAGCGCTGCCATCTTAATCATTTTTTGGA
GCTGAAACGGCAATGATGCGCGTGCTCGTGTTGCTTGATCTCACGCTAAG
CGTTAGCGTCGGTGTCGGGAACGTGTTGCTGTCATTGTGTAGAGACGATA
TGCCAATGGTATGCGCGCTCATGCTGCTTTTCATGTCACGGTATTTATGC
GTTGAACGCATTTCACTGAACTTGACGCTTTTAGTACTGGACGCCCGTTT
GGTGACGATTTGGTGACACCTAACTTCGGCCAATGTTTTATGTACCTACG
ACTTAGAGGTGTGCACAAATGGTAGTCTTTAGAACCTGAAAAAAGGTCTG
GGAATACCCTGCCGAGGTACATGGGCTCTATACCTGCCATAAATGCCCTC
CACACAGCTCCAAAGCAGCGCTGGGGGCACAGCTGAGTTGTCGCAGATAT
CTCCAAAATCACGAAAAAAACAAACGTCCCTGCGATTCCAAATTCTGCAC
TTTCCGCGGCGCCCCCAGCGATTGAGCCGTTGAGCTGAAAGCACACATAC
ACACACACACACACACACACACACACACCTCTTCGCTGTAACTCTCGAGA
AGCACCGTCTGCTGAACTTAGAGCGGGTTGCTCCGCCCACCACGCTGGTT
TGTGCGCTGTGTGCGCAGCAGCCCAGGGTTCACCACCCCATGTCCCAAAG
ACATGGAACTCTGTATTGTCTGGTACGCGACGAAAATTTGACTTGGGTTT
GAGTACGCAGAGTTGTCACCAAACGCTTAGCAGAGTTTGACTGCTGTTGA
GTATGGAAAAGCGTCACCAATTTTTGGGGGTCCCTGCAGCCTGGTTTTGG
CAGGACTGTAAACCTTGGGCCAATCAGTCAGCGGGCAGCCAGATGGCGTG
GTAATTGTTTTTGCGCCAACTTTTTTTTTTCAGAGGGCGCGCGTACTAAA
AGGGTTAAGAGAAAGCTCTCCTTTGCCATACGATACGACAATCTTATCGA
TACCGGGATGGGTTGGGTGCAATCGCGTCACCCCCTCGTCAGGTGAAAAA
GCATGGACAGAAGTGGAGTGTGATTGAGAAAGAAATGGACAGGCCTGCTG
GGGCTTGCAGGGACAAGTTCAGAGACATCGTGCCCGATGCGCAGCAAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1620:231..3680+

>mRNA_L-elsbetiae_contig1620.4255.1 ID=mRNA_L-elsbetiae_contig1620.4255.1|Name=mRNA_L-elsbetiae_contig1620.4255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig1620:231..3680+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAAATACAGCAAGACCGAGTCTCAGATTGTGGTGGACGCTGCGAGGCA
ATACGCTGCCGTCAACTCCGTTACCGTGGAGGGAAAATACAGCAAGACCG
AGTCTCAGATTGTGGTGGACGCTGCGAGGCAATACGCTGCCGTCAACTCC
GTTACCGTGGAGCAACTATGCGGAGAGGGGGCTATGAAGGGGGCGTGGCC
TGCCATCGCAAACTGCCTGACGAATAGGAGCCAACTATGCGGAGAGGGGG
CTATGAAGGGGGCGTGGCCTGCCATCGCAAACTGCCTGACGAATAGGAGC
TCTATCTTTCGTCATGGGGTTAGGAAACTCAAAGGCCTCAAGGCGGGTCC
GTGGAGCACGGCCGAAGTCGACACTCTACGGTCTTTGTCTATCTTTCGTC
ATGGGGTTAGGAAACTCAAAGGCCTCAAGGCGGGTCCGTGGAGCACGGCC
GAAGTCGACACTCTACGGTCTTTGGTGAAAAAGCATGGACAGAAGTGGAG
TGTGATTGAGAAAGAAATGGACAGGCCTGCTGGGGCTTGCAGGGACAAGT
TCAGAGACATCGTGCCCGATGCGCAGCAAGGCGTGAAAAAGCATGGACAG
AAGTGGAGTGTGATTGAGAAAGAAATGGACAGGCCTGCTGGGGCTTGCAG
GGACAAGTTCAGAGACATCGTGCCCGATGCGCAGCAAGGC
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