prot_L-elsbetiae_contig1535.3788.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1535.3788.1
Unique Nameprot_L-elsbetiae_contig1535.3788.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length458
Homology
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BLAST of mRNA_L-elsbetiae_contig1535.3788.1 vs. uniprot
Match: D7FWK9_ECTSI (IBR domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK9_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 6.110e-41
Identity = 91/170 (53.53%), Postives = 108/170 (63.53%), Query Frame = 0 
Query:  158 AKTDVRASTSTPTPRPEAVFYCSFCMRNKPGPDRRRFEGNGGCSHEFCKKCLENYLYHRIMVGHHSLHPCPKFGEEACRASASNDDVRRMARADVFKEHCERLQGNRGACEECGHRGRRSPSQLSPXXXXXXXXXXXXXXXXXXVATT-------AVVADEDTTCQSCGS 320
            ++TDV    S    R    FYC++CMRN+PG  RRRFEGNGGCSHEFCK CLE+YL+ RIMVGHHSLHPCPKFGEE+CR+SA+ +DVRR+ RA+V++EH  RL+G  GAC                XXXXXXXX           A            A+ED TCQSCGS
Sbjct:   41 SRTDVMFKESLKVAR----FYCAYCMRNQPGTSRRRFEGNGGCSHEFCKACLEDYLFQRIMVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACXXXXXXXXXXXXXXXXXXXXXXXXLLSAISRRASAAXADSHEEDAGAGANEDNTCQSCGS 206
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BLAST of mRNA_L-elsbetiae_contig1535.3788.1 vs. uniprot
Match: A0A6H5KA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA60_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.750e-29
Identity = 79/157 (50.32%), Postives = 90/157 (57.32%), Query Frame = 0 
Query:  175 AVFYCSFCMRNKPGPDRRRFEGNGGCSHEFCKKCLENYLYHRIMVGHHSLHPCPKF--GEEACRASASNDDVRRMARADVFKEHCERLQGNRGACEECGHRGRRSPSQLSPXXXXXXXXXXXXXXXXXXVAT-------TAVVADEDTTCQSCGSAR 322
            A FYC++CMRN+PG  RRRFEGNGGCSHEFCK CLE+YL+ RIMVGHHSLHPCPK    ++   + AS+       R+   +      QG  GACEECGH           XXXXXXXX           A        T   A ED TCQSCGS R
Sbjct:    9 ARFYCAYCMRNQPGTSRRRFEGNGGCSHEFCKACLEDYLFQRIMVGHHSLHPCPKVDSADQGTTSFASDVICGDPGRSVKHQRPDTLQQGLSGACEECGHXXXXXXXXXXXXXXXXXXXLLSSLSQRASAAAADSHEEDTDAGAKEDNTCQSCGSTR 165
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BLAST of mRNA_L-elsbetiae_contig1535.3788.1 vs. uniprot
Match: A0A6U4EC27_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EC27_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.110e-10
Identity = 48/132 (36.36%), Postives = 64/132 (48.48%), Query Frame = 0 
Query:  154 GVQGAKTDVRASTSTPTPRPEAVFYCSFCMRNKPGPDRRRFEGNGG-CSHEFCKKCLENYLYHRIMVGHHSLHPCPKFGEEACRASASNDDVRRMARADVFKEHCERLQG-----NRGACEECGHRGRRSPS 279
            GV  +  ++  S S  T   E    C  C+ N       R  GNGG CSH FCK CL  YL  R+  GH S   CP +  +ACRA+AS +D RR+     F ++ ER +      N   C +CG +   SP+
Sbjct:   50 GVTVSLPELLRSASRRTGTTEPTVLCGICLENVAVSTTTRLRGNGGPCSHRFCKACLAGYLGSRVRDGHVST-SCPHYQTDACRATASEEDHRRLLSPGDFAKY-ERFRRMAEDENWRDCPKCGAQVLGSPA 179
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1535.3788.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWK9_ECTSI6.110e-4153.53IBR domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KA60_9PHAE3.750e-2950.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U4EC27_9STRA1.110e-1036.36Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 174..271
e-value: 1.3E-9
score: 40.0
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 200..209
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 179..228
score: 8.55
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 175..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1535contigL-elsbetiae_contig1535:2718..6809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1535.3788.1mRNA_L-elsbetiae_contig1535.3788.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1535 2647..7150 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1535.3788.1 ID=prot_L-elsbetiae_contig1535.3788.1|Name=mRNA_L-elsbetiae_contig1535.3788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=458bp
MPDSLEEKRGEKAVQRAPSPRSSSNIHDNELPFGSPVSKSVVAQLARIRF
LPRELPDGMISPSAMSAETMETHALDVESPGATLQRKKQGGGIVYFPPEN
LAEYLDSSLVTPITGGLSPAPRGSIGSSNGGGRRPRSFFDECDASNEEAP
AEAGVQGAKTDVRASTSTPTPRPEAVFYCSFCMRNKPGPDRRRFEGNGGC
SHEFCKKCLENYLYHRIMVGHHSLHPCPKFGEEACRASASNDDVRRMARA
DVFKEHCERLQGNRGACEECGHRGRRSPSQLSPPPPPPPSPPPTSSHSSR
DVATTAVVADEDTTCQSCGSARGRHLHKHHHHHHHHPRDRRQNHPTVSAV
GKSKRSWFPHRAAASTGVDATAASADGGDKTPRQRRQRGRQLTLAVETLT
TAEAGGREAKKDSARQESPRWWSPREWWTKARDKQRTPRRGNSGARGDGS
SAKKWVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING