mRNA_L-elsbetiae_contig1535.3788.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1535.3788.1 vs. uniprot
Match: D7FWK9_ECTSI (IBR domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK9_ECTSI) HSP 1 Score: 164 bits (414), Expect = 6.560e-40 Identity = 91/170 (53.53%), Postives = 108/170 (63.53%), Query Frame = 3 Query: 543 AKTDVRASTSTPTPRPEAVFYCSFCMRNKPGPDRRRFEGNGGCSHEFCKKCLENYLYHRIMVGHHSLHPCPKFGEEACRASASNDDVRRMARADVFKEHCERLQGNRGACEECGHRGRRSPSQLSPXXXXXXXXXXXXXXXXXXVATT-------AVVADEDTTCQSCGS 1031 ++TDV S R FYC++CMRN+PG RRRFEGNGGCSHEFCK CLE+YL+ RIMVGHHSLHPCPKFGEE+CR+SA+ +DVRR+ RA+V++EH RL+G GAC XXXXXXXX A A+ED TCQSCGS Sbjct: 41 SRTDVMFKESLKVAR----FYCAYCMRNQPGTSRRRFEGNGGCSHEFCKACLEDYLFQRIMVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACXXXXXXXXXXXXXXXXXXXXXXXXLLSAISRRASAAXADSHEEDAGAGANEDNTCQSCGS 206
BLAST of mRNA_L-elsbetiae_contig1535.3788.1 vs. uniprot
Match: A0A6H5KA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA60_9PHAE) HSP 1 Score: 131 bits (329), Expect = 2.010e-28 Identity = 79/157 (50.32%), Postives = 90/157 (57.32%), Query Frame = 3 Query: 594 AVFYCSFCMRNKPGPDRRRFEGNGGCSHEFCKKCLENYLYHRIMVGHHSLHPCPKF--GEEACRASASNDDVRRMARADVFKEHCERLQGNRGACEECGHRGRRSPSQLSPXXXXXXXXXXXXXXXXXXVAT-------TAVVADEDTTCQSCGSAR 1037 A FYC++CMRN+PG RRRFEGNGGCSHEFCK CLE+YL+ RIMVGHHSLHPCPK ++ + AS+ R+ + QG GACEECGH XXXXXXXX A T A ED TCQSCGS R Sbjct: 9 ARFYCAYCMRNQPGTSRRRFEGNGGCSHEFCKACLEDYLFQRIMVGHHSLHPCPKVDSADQGTTSFASDVICGDPGRSVKHQRPDTLQQGLSGACEECGHXXXXXXXXXXXXXXXXXXXLLSSLSQRASAAAADSHEEDTDAGAKEDNTCQSCGSTR 165
BLAST of mRNA_L-elsbetiae_contig1535.3788.1 vs. uniprot
Match: A0A6U4EC27_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EC27_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.990e-10 Identity = 48/132 (36.36%), Postives = 64/132 (48.48%), Query Frame = 3 Query: 531 GVQGAKTDVRASTSTPTPRPEAVFYCSFCMRNKPGPDRRRFEGNGG-CSHEFCKKCLENYLYHRIMVGHHSLHPCPKFGEEACRASASNDDVRRMARADVFKEHCERLQG-----NRGACEECGHRGRRSPS 908 GV + ++ S S T E C C+ N R GNGG CSH FCK CL YL R+ GH S CP + +ACRA+AS +D RR+ F ++ ER + N C +CG + SP+ Sbjct: 50 GVTVSLPELLRSASRRTGTTEPTVLCGICLENVAVSTTTRLRGNGGPCSHRFCKACLAGYLGSRVRDGHVST-SCPHYQTDACRATASEEDHRRLLSPGDFAKY-ERFRRMAEDENWRDCPKCGAQVLGSPA 179 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1535.3788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1535.3788.1 >prot_L-elsbetiae_contig1535.3788.1 ID=prot_L-elsbetiae_contig1535.3788.1|Name=mRNA_L-elsbetiae_contig1535.3788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=458bp MPDSLEEKRGEKAVQRAPSPRSSSNIHDNELPFGSPVSKSVVAQLARIRFback to top mRNA from alignment at L-elsbetiae_contig1535:2647..7150+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1535.3788.1 ID=mRNA_L-elsbetiae_contig1535.3788.1|Name=mRNA_L-elsbetiae_contig1535.3788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4504bp|location=Sequence derived from alignment at L-elsbetiae_contig1535:2647..7150+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1535:2647..7150+ >mRNA_L-elsbetiae_contig1535.3788.1 ID=mRNA_L-elsbetiae_contig1535.3788.1|Name=mRNA_L-elsbetiae_contig1535.3788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2748bp|location=Sequence derived from alignment at L-elsbetiae_contig1535:2647..7150+ (Laminarionema elsbetiae ELsaHSoW15)back to top |