prot_L-elsbetiae_contig13909.2939.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig13909.2939.1
Unique Name	prot_L-elsbetiae_contig13909.2939.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	76

Homology

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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A433PVI3_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433PVI3_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.540e-15
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 50
            V+FHPN+ Y+VTGS D+T R+WDVQ G CVR+  GH G++  VAVSP GR
Sbjct:   60 VKFHPNSKYIVTGSGDRTARLWDVQRGTCVRVFTGHTGSINAVAVSPDGR 109

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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A1R3J7F1_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3J7F1_9ROSI)

HSP 1 Score: 70.1 bits (170), Expect = 3.010e-14
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0

Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGRQVRLRSRESSLFS 63
            V++H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH   +  +A+SP GR +     ++   S
Sbjct:   11 VQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDAGALS 73

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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A5K1CBA1_9MAGN (Uncharacterized protein (Fragment) n=17 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1CBA1_9MAGN)

HSP 1 Score: 70.1 bits (170), Expect = 4.100e-14
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 50
            V++H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH   V  +A+SP GR
Sbjct:    2 VQWHANCNYIATGSSDKTVRLWDVQSGECVRMFIGHRSMVLSMAMSPDGR 51

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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A371I4V7_MUCPR (Transcription initiation factor TFIID subunit 5 (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371I4V7_MUCPR)

HSP 1 Score: 72.0 bits (175), Expect = 4.210e-14
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 50
            V++H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH G +  +A+SP GR
Sbjct:    2 VQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGR 51

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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A1D6H6T3_MAIZE (Transcription initiation factor TFIID subunit 5 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6H6T3_MAIZE)

HSP 1 Score: 70.9 bits (172), Expect = 8.200e-14
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 50
            V++H N NY+ TGS DKTVR+WDVQTG+C+R+  GH   V  +A+SP GR
Sbjct:   58 VQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMSPDGR 107

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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A426ZFS7_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426ZFS7_ENSVE)

HSP 1 Score: 71.2 bits (173), Expect = 8.570e-14
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 50
            V++H N NYV TGS DKTVR+WDVQ+G+CVR+  GH   V  +A+SP GR
Sbjct:    7 VQWHANCNYVATGSSDKTVRLWDVQSGECVRIFIGHRSTVLSLAMSPDGR 56

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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A7J9JP37_9ROSI (Uncharacterized protein n=1 Tax=Gossypium armourianum TaxID=34283 RepID=A0A7J9JP37_9ROSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.010e-13
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 50
            V++H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH   +  +A+SP GR
Sbjct:   11 VQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAISPDGR 60

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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A5J4ZVF3_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZVF3_9ASTE)

HSP 1 Score: 70.9 bits (172), Expect = 1.420e-13
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 50
            VR+H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH   +  +A SP GR
Sbjct:   11 VRWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLATSPDGR 60

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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A835HEC6_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HEC6_9MAGN)

HSP 1 Score: 71.2 bits (173), Expect = 1.450e-13
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 50
            VR+H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH   +  +A+SP GR
Sbjct:    2 VRWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGR 51

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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A2B4R333_STYPI (Transcription initiation factor TFIID subunit 5 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R333_STYPI)

HSP 1 Score: 71.6 bits (174), Expect = 1.930e-13
Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 0

Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGRQVRLRSRESSLFSVGTLAAEPS 72
            V FHPN NY+ TGS D+TVR+WD+ TG  VR   GH G +  +A SP GR +    +    F  G +  +PS
Sbjct:   36 VVFHPNCNYIATGSCDRTVRLWDINTGSSVRFFTGHKGAIYSLAFSPDGRYLASSEQGLDSFWYGCIGEKPS 107

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A433PVI3_9FUNG	1.540e-15	62.00	WD40-repeat-containing domain protein n=1 Tax=Jimg...	[more]
A0A1R3J7F1_9ROSI	3.010e-14	46.03	Uncharacterized protein n=1 Tax=Corchorus olitoriu...	[more]
A0A5K1CBA1_9MAGN	4.100e-14	58.00	Uncharacterized protein (Fragment) n=17 Tax=Nympha...	[more]
A0A371I4V7_MUCPR	4.210e-14	58.00	Transcription initiation factor TFIID subunit 5 (F...	[more]
A0A1D6H6T3_MAIZE	8.200e-14	58.00	Transcription initiation factor TFIID subunit 5 n=...	[more]
A0A426ZFS7_ENSVE	8.570e-14	60.00	Uncharacterized protein n=1 Tax=Ensete ventricosum...	[more]
A0A7J9JP37_9ROSI	1.010e-13	56.00	Uncharacterized protein n=1 Tax=Gossypium armouria...	[more]
A0A5J4ZVF3_9ASTE	1.420e-13	58.00	Uncharacterized protein n=1 Tax=Nyssa sinensis Tax...	[more]
A0A835HEC6_9MAGN	1.450e-13	58.00	Uncharacterized protein (Fragment) n=1 Tax=Coptis ...	[more]
A0A2B4R333_STYPI	1.930e-13	44.44	Transcription initiation factor TFIID subunit 5 n=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..62 e-value: 1.3E-19 score: 72.5
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 27..51 e-value: 0.0019 score: 19.0 coord: 1..23 e-value: 2.0E-6 score: 28.4
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 1..32 score: 15.722
None	No IPR available	PANTHER	PTHR19879	TRANSCRIPTION INITIATION FACTOR TFIID	coord: 1..52
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 10..24
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 1..52 score: 16.427
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 2..53

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig13909	contig	L-elsbetiae_contig13909:4561..4788 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig13909.2939.1	mRNA_L-elsbetiae_contig13909.2939.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig13909 4561..4788 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig13909.2939.1 ID=prot_L-elsbetiae_contig13909.2939.1|Name=mRNA_L-elsbetiae_contig13909.2939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR
QVRLRSRESSLFSVGTLAAEPSCCCC

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom
IPR036322	WD40_repeat_dom_sf