mRNA_L-elsbetiae_contig13909.2939.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13909.2939.1
Unique NamemRNA_L-elsbetiae_contig13909.2939.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A433PVI3_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433PVI3_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.540e-15
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 150
            V+FHPN+ Y+VTGS D+T R+WDVQ G CVR+  GH G++  VAVSP GR
Sbjct:   60 VKFHPNSKYIVTGSGDRTARLWDVQRGTCVRVFTGHTGSINAVAVSPDGR 109
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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A1R3J7F1_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3J7F1_9ROSI)

HSP 1 Score: 70.1 bits (170), Expect = 3.010e-14
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGRQVRLRSRESSLFS 189
            V++H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH   +  +A+SP GR +     ++   S
Sbjct:   11 VQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDAGALS 73
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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A5K1CBA1_9MAGN (Uncharacterized protein (Fragment) n=17 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1CBA1_9MAGN)

HSP 1 Score: 70.1 bits (170), Expect = 4.100e-14
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 150
            V++H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH   V  +A+SP GR
Sbjct:    2 VQWHANCNYIATGSSDKTVRLWDVQSGECVRMFIGHRSMVLSMAMSPDGR 51
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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A371I4V7_MUCPR (Transcription initiation factor TFIID subunit 5 (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371I4V7_MUCPR)

HSP 1 Score: 72.0 bits (175), Expect = 4.210e-14
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 150
            V++H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH G +  +A+SP GR
Sbjct:    2 VQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGR 51
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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A1D6H6T3_MAIZE (Transcription initiation factor TFIID subunit 5 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6H6T3_MAIZE)

HSP 1 Score: 70.9 bits (172), Expect = 8.200e-14
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 150
            V++H N NY+ TGS DKTVR+WDVQTG+C+R+  GH   V  +A+SP GR
Sbjct:   58 VQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMSPDGR 107
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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A426ZFS7_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426ZFS7_ENSVE)

HSP 1 Score: 71.2 bits (173), Expect = 8.570e-14
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 150
            V++H N NYV TGS DKTVR+WDVQ+G+CVR+  GH   V  +A+SP GR
Sbjct:    7 VQWHANCNYVATGSSDKTVRLWDVQSGECVRIFIGHRSTVLSLAMSPDGR 56
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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A7J9JP37_9ROSI (Uncharacterized protein n=1 Tax=Gossypium armourianum TaxID=34283 RepID=A0A7J9JP37_9ROSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.010e-13
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 150
            V++H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH   +  +A+SP GR
Sbjct:   11 VQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAISPDGR 60
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BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A5J4ZVF3_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZVF3_9ASTE)

HSP 1 Score: 70.9 bits (172), Expect = 1.420e-13
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 150
            VR+H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH   +  +A SP GR
Sbjct:   11 VRWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLATSPDGR 60
[Close]
BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A835HEC6_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HEC6_9MAGN)

HSP 1 Score: 71.2 bits (173), Expect = 1.450e-13
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR 150
            VR+H N NY+ TGS DKTVR+WDVQ+G+CVR+  GH   +  +A+SP GR
Sbjct:    2 VRWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGR 51
[Close]
BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Match: A0A2B4R333_STYPI (Transcription initiation factor TFIID subunit 5 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R333_STYPI)

HSP 1 Score: 71.6 bits (174), Expect = 1.930e-13
Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:    1 VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGRQVRLRSRESSLFSVGTLAAEPS 216
            V FHPN NY+ TGS D+TVR+WD+ TG  VR   GH G +  +A SP GR +    +    F  G +  +PS
Sbjct:   36 VVFHPNCNYIATGSCDRTVRLWDINTGSSVRFFTGHKGAIYSLAFSPDGRYLASSEQGLDSFWYGCIGEKPS 107
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13909.2939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A433PVI3_9FUNG1.540e-1562.00WD40-repeat-containing domain protein n=1 Tax=Jimg... [more]
A0A1R3J7F1_9ROSI3.010e-1446.03Uncharacterized protein n=1 Tax=Corchorus olitoriu... [more]
A0A5K1CBA1_9MAGN4.100e-1458.00Uncharacterized protein (Fragment) n=17 Tax=Nympha... [more]
A0A371I4V7_MUCPR4.210e-1458.00Transcription initiation factor TFIID subunit 5 (F... [more]
A0A1D6H6T3_MAIZE8.200e-1458.00Transcription initiation factor TFIID subunit 5 n=... [more]
A0A426ZFS7_ENSVE8.570e-1460.00Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A7J9JP37_9ROSI1.010e-1356.00Uncharacterized protein n=1 Tax=Gossypium armouria... [more]
A0A5J4ZVF3_9ASTE1.420e-1358.00Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A835HEC6_9MAGN1.450e-1358.00Uncharacterized protein (Fragment) n=1 Tax=Coptis ... [more]
A0A2B4R333_STYPI1.930e-1344.44Transcription initiation factor TFIID subunit 5 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13909contigL-elsbetiae_contig13909:4561..4788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score72.0
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog132908.ENSPVAP00000003949
Preferred nameTAF5
KEGG koko:K03130
KEGG Pathwayko03022,ko05168,map03022,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005856,GO:0006139,GO:0006325,GO:0006351,GO:0006352,GO:0006355,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0015629,GO:0016043,GO:0016070,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023051,GO:0030880,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033276,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0046983,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070461,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Transcription initiation factor TFIID subunit 5
EggNOG OGs38CV7@33154,3BB2Z@33208,3CXI4@33213,3JEPV@40674,48735@7711,495B0@7742,4M0J3@9397,COG2319@1,KOG0263@2759
COG Functional cat.K
Best tax levelChiroptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.0442245-CDS-L-elsbetiae_contig13909:4560..47881622815547.0442245-CDS-L-elsbetiae_contig13909:4560..4788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13909 4561..4788 +
1691682952.1094844-CDS-L-elsbetiae_contig13909:4560..47881691682952.1094844-CDS-L-elsbetiae_contig13909:4560..4788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13909 4561..4788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13909.2939.1prot_L-elsbetiae_contig13909.2939.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13909 4561..4788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13909.2939.1

>prot_L-elsbetiae_contig13909.2939.1 ID=prot_L-elsbetiae_contig13909.2939.1|Name=mRNA_L-elsbetiae_contig13909.2939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
VRFHPNANYVVTGSMDKTVRVWDVQTGDCVRLLAGHAGNVTCVAVSPSGR
QVRLRSRESSLFSVGTLAAEPSCCCC
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mRNA from alignment at L-elsbetiae_contig13909:4561..4788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13909.2939.1 ID=mRNA_L-elsbetiae_contig13909.2939.1|Name=mRNA_L-elsbetiae_contig13909.2939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig13909:4561..4788+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAGGTTCCACCCCAATGCCAACTACGTGGTGACCGGGAGCATGGACAA
GACGGTTCGCGTTTGGGATGTGCAGACCGGTGACTGCGTTCGGCTTCTGG
CCGGGCACGCGGGGAACGTTACGTGTGTCGCCGTGTCACCCAGCGGGCGC
CAGGTGCGTCTGCGGTCTCGAGAGTCTTCACTTTTTTCGGTTGGAACGCT
TGCTGCGGAACCGTCTTGTTGTTGTTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13909:4561..4788+

>mRNA_L-elsbetiae_contig13909.2939.1 ID=mRNA_L-elsbetiae_contig13909.2939.1|Name=mRNA_L-elsbetiae_contig13909.2939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig13909:4561..4788+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAGGTTCCACCCCAATGCCAACTACGTGGTGACCGGGAGCATGGACAA
GACGGTTCGCGTTTGGGATGTGCAGACCGGTGACTGCGTTCGGCTTCTGG
CCGGGCACGCGGGGAACGTTACGTGTGTCGCCGTGTCACCCAGCGGGCGC
CAGGTGCGTCTGCGGTCTCGAGAGTCTTCACTTTTTTCGGTTGGAACGCT
TGCTGCGGAACCGTCTTGTTGTTGTTGTGTCAGGTTCCACCCCAATGCCA
ACTACGTGGTGACCGGGAGCATGGACAAGACGGTTCGCGTTTGGGATGTG
CAGACCGGTGACTGCGTTCGGCTTCTGGCCGGGCACGCGGGGAACGTTAC
GTGTGTCGCCGTGTCACCCAGCGGGCGCCAGGTGCGTCTGCGGTCTCGAG
AGTCTTCACTTTTTTCGGTTGGAACGCTTGCTGCGGAACCGTCTTGTTGT
TGTTGT
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