prot_L-elsbetiae_contig13904.2937.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13904.2937.1
Unique Nameprot_L-elsbetiae_contig13904.2937.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length37
Homology
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BLAST of mRNA_L-elsbetiae_contig13904.2937.1 vs. uniprot
Match: D8LMQ5_ECTSI (Pol1-like DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.170e-6
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0 
Query:    1 EREAVDFTKLTVPALRDILRKKELKVSGKKAELIERL 37
            E E VD++KLTVP L+DILR K+LKVSG+K ELIERL
Sbjct:  362 EAEVVDYSKLTVPKLKDILRAKKLKVSGRKEELIERL 398
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BLAST of mRNA_L-elsbetiae_contig13904.2937.1 vs. uniprot
Match: A0A6H5K9D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.200e-6
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0 
Query:    1 EREAVDFTKLTVPALRDILRKKELKVSGKKAELIERL 37
            E E VD++KLTVP L+DILR K+LKVSG+K ELIERL
Sbjct:  492 EVEVVDYSKLTVPKLKDILRAKKLKVSGRKEELIERL 528
[Close]
BLAST of mRNA_L-elsbetiae_contig13904.2937.1 vs. uniprot
Match: K0T5H2_THAOC (SAP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5H2_THAOC)

HSP 1 Score: 48.5 bits (114), Expect = 1.980e-5
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0 
Query:    1 EREAVDFTKLTVPALRDILRKKELKVSGKKAELIERL 37
            E E +D++K+TV  L+D+LR K +KVSGKKAELIERL
Sbjct:  539 EEEPIDYSKMTVAQLKDLLRSKGMKVSGKKAELIERL 575
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13904.2937.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMQ5_ECTSI1.170e-672.97Pol1-like DNA polymerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K9D2_9PHAE2.200e-672.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0T5H2_THAOC1.980e-564.86SAP domain-containing protein n=1 Tax=Thalassiosir... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003034SAP domainSMARTSM00513sap_9coord: 7..37
e-value: 0.0025
score: 27.1
IPR003034SAP domainPFAMPF02037SAPcoord: 7..37
e-value: 3.9E-12
score: 45.6
IPR003034SAP domainPROSITEPS50800SAPcoord: 7..37
score: 11.364
IPR036361SAP domain superfamilyGENE3D1.10.720.30coord: 4..37
e-value: 4.3E-13
score: 50.7
IPR036361SAP domain superfamilySUPERFAMILY68906SAP domaincoord: 6..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13904contigL-elsbetiae_contig13904:4305..4415 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13904.2937.1mRNA_L-elsbetiae_contig13904.2937.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13904 4305..4415 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13904.2937.1 ID=prot_L-elsbetiae_contig13904.2937.1|Name=mRNA_L-elsbetiae_contig13904.2937.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=37bp
EREAVDFTKLTVPALRDILRKKELKVSGKKAELIERL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
IPR036361SAP_dom_sf