mRNA_L-elsbetiae_contig13904.2937.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13904.2937.1
Unique NamemRNA_L-elsbetiae_contig13904.2937.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13904.2937.1 vs. uniprot
Match: D8LMQ5_ECTSI (Pol1-like DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.170e-6
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 EREAVDFTKLTVPALRDILRKKELKVSGKKAELIERL 111
            E E VD++KLTVP L+DILR K+LKVSG+K ELIERL
Sbjct:  362 EAEVVDYSKLTVPKLKDILRAKKLKVSGRKEELIERL 398
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BLAST of mRNA_L-elsbetiae_contig13904.2937.1 vs. uniprot
Match: A0A6H5K9D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.200e-6
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 EREAVDFTKLTVPALRDILRKKELKVSGKKAELIERL 111
            E E VD++KLTVP L+DILR K+LKVSG+K ELIERL
Sbjct:  492 EVEVVDYSKLTVPKLKDILRAKKLKVSGRKEELIERL 528
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BLAST of mRNA_L-elsbetiae_contig13904.2937.1 vs. uniprot
Match: K0T5H2_THAOC (SAP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5H2_THAOC)

HSP 1 Score: 48.5 bits (114), Expect = 1.980e-5
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 EREAVDFTKLTVPALRDILRKKELKVSGKKAELIERL 111
            E E +D++K+TV  L+D+LR K +KVSGKKAELIERL
Sbjct:  539 EEEPIDYSKMTVAQLKDLLRSKGMKVSGKKAELIERL 575
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13904.2937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMQ5_ECTSI1.170e-672.97Pol1-like DNA polymerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K9D2_9PHAE2.200e-672.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0T5H2_THAOC1.980e-564.86SAP domain-containing protein n=1 Tax=Thalassiosir... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13904contigL-elsbetiae_contig13904:4305..4415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.956474-CDS-L-elsbetiae_contig13904:4304..44151622815546.956474-CDS-L-elsbetiae_contig13904:4304..4415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13904 4305..4415 +
1691682952.0736022-CDS-L-elsbetiae_contig13904:4304..44151691682952.0736022-CDS-L-elsbetiae_contig13904:4304..4415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13904 4305..4415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13904.2937.1prot_L-elsbetiae_contig13904.2937.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13904 4305..4415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13904.2937.1

>prot_L-elsbetiae_contig13904.2937.1 ID=prot_L-elsbetiae_contig13904.2937.1|Name=mRNA_L-elsbetiae_contig13904.2937.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=37bp
EREAVDFTKLTVPALRDILRKKELKVSGKKAELIERL
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mRNA from alignment at L-elsbetiae_contig13904:4305..4415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13904.2937.1 ID=mRNA_L-elsbetiae_contig13904.2937.1|Name=mRNA_L-elsbetiae_contig13904.2937.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=111bp|location=Sequence derived from alignment at L-elsbetiae_contig13904:4305..4415+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCGGGAGGCGGTCGATTTTACGAAGCTTACGGTGCCGGCGCTGAGGGA
CATCCTGAGGAAGAAGGAGCTGAAGGTCTCGGGGAAGAAGGCGGAGCTGA
TCGAGCGCCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13904:4305..4415+

>mRNA_L-elsbetiae_contig13904.2937.1 ID=mRNA_L-elsbetiae_contig13904.2937.1|Name=mRNA_L-elsbetiae_contig13904.2937.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=222bp|location=Sequence derived from alignment at L-elsbetiae_contig13904:4305..4415+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCGGGAGGCGGTCGATTTTACGAAGCTTACGGTGCCGGCGCTGAGGGA
CATCCTGAGGAAGAAGGAGCTGAAGGTCTCGGGGAAGAAGGCGGAGCTGA
TCGAGCGCCTAGAGCGGGAGGCGGTCGATTTTACGAAGCTTACGGTGCCG
GCGCTGAGGGACATCCTGAGGAAGAAGGAGCTGAAGGTCTCGGGGAAGAA
GGCGGAGCTGATCGAGCGCCTA
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