prot_L-elsbetiae_contig1164.1425.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1164.1425.1
Unique Nameprot_L-elsbetiae_contig1164.1425.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length481
Homology
BLAST of mRNA_L-elsbetiae_contig1164.1425.1 vs. uniprot
Match: A0A6H5K2Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y8_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 7.600e-44
Identity = 188/482 (39.00%), Postives = 227/482 (47.10%), Query Frame = 0
Query:    1 MRNCRSLKRRRSWLEIGFAGCVMLSNPTQGGAAAAWPSLGTVWSAPQRQHTPTQQQRPSVKPLQQTQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSDDHSKLLRRALLLPGGVHEVEIVLHAGVGDWGACSPETCTQTRQVFCETRESRIVASG-LCGDQLPEAERVCEGEDVAAVCG--DAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRDQRSGA--EPAAGDNRENNRASPPRKVPAPESPWKRATAPEAPAAPAEERDVAEAXXXXXXXXXXXXGADSIKPAPSRQQGETPGNPSASAAGSTPKSTPTKPNLASSGGRLNQMGGAGHRSHRLEYRFWLVLAIGAGAVGSFMAVVVFSVGQYQKEQHRLRGIMALNEFPQDNYINPFAQQLSSSDLPEDDRSAF 477
            M   +SLKRRR WL    AGC +L+ P Q   AAAWPS GT+W  P    +P   +  + +P +Q   XXXXXXXXXXXXXXXX                                         R + LP  V EV I +    GDW ACS ETCTQTR VFCET +SRIV S  LCGD+LP AER C G D+  VCG  D++A         XXXXXXX                                                               S  Q++G    P   ++++       ++VP+        TA    +           XXXXX         D      SR Q E P      AA ST +S       A     +++MGG G   +R +YRFWLV+AIGAGAVGSF+AVVVF+VGQY+KE+HRLRGIM LNEFPQDNYINPFA+QLSS DL +DDRSAF
Sbjct:    1 MERGQSLKRRRGWL---LAGCSLLAAPVQ---AAAWPSWGTLW--PSLPLSPQSSRNQAAEPSRQNHXXXXXXXXXXXXXXXXXSLRGGRRSPSRQLRAGKVKK--------------------HRTIPLPSRVLEVAIAVQGRHGDWNACSAETCTQTRLVFCETLDSRIVVSNDLCGDELPAAERECTGADIDEVCGGRDSSARGGPTQQQTXXXXXXXADSTTLAENAG---------------------------------------------------GSNGQKTGDTHSPVVSNSQKG------KEVPSAIPRGGETTA----SXXXXXXXXXXXXXXXXPALKGSASRDDAADRSSRPQDEIP------AAASTNESAHIL--AAKQQSAMSRMGGPGR--NRAQYRFWLVMAIGAGAVGSFLAVVVFAVGQYRKERHRLRGIMPLNEFPQDNYINPFAKQLSS-DLSDDDRSAF 382          
BLAST of mRNA_L-elsbetiae_contig1164.1425.1 vs. uniprot
Match: D7FU42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU42_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 5.890e-34
Identity = 205/487 (42.09%), Postives = 236/487 (48.46%), Query Frame = 0
Query:    1 MRNCRSLKRRRSWLEIGFAGCVMLSNPTQGGAAAAWPSLGTVWSAPQRQHTPTQQQRPSVKPLQQTQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSDDHSKLLR-------RALLLPGGVHEVEIVLHAGVGDWGACSPETCTQTRQVFCETRESRIVASG-LCGDQLPEAERVCEGEDVAAVCG--DAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRDQRSGAEPAAGDNRENNRASPPRKVPAPESPWKRATAPEAPAAPAEERDVAEAXXXXXXXXXXXXGADSIKPAPSRQQGETPGNPSASAAGSTPKSTPTKPNLASSGGRLNQMGGAGHRSHRLEYRFWLVLAIGAGAVGSFMAVVVFSVGQYQKEQHRLRGIMALNEFPQDNYINPFAQQLSSSDLPEDDRSAF 477
            M   +SLKRRR WL    AGC +L+ P Q   AAAWPS GT+W  P     P   +  + +P +Q                          XXXXXXXXXXXXXXXXXXX          S+ LR       R + LP  V EV I +    GDW ACSPETCTQTR VFCET  SRIV S  LCGD+LP AER C G D+ A CG  D +A         XXXXXXXXXXXXXXXXXXXXXXX                                               + D RS   P   ++++   A  P  VP                           XXXXXXXXXXXX                                      A     +++MGG G    R +YRFWLV+AIG  AVGSF+AVVVF+VGQY+KE+HRLRGIMALNEFPQDNYINPFA+QLSS DL ++DRSAF
Sbjct:    2 MERGQSLKRRRGWL---LAGCSLLAAPVQ---AAAWPSWGTLW--PALPPAPQSSRNQAAEPSRQN-------------------------XXXXXXXXXXXXXXXXXXXPSLRGGRSSPSRQLRAGKVKKHRTIPLPSRVLEVAIAVQGRHGDWDACSPETCTQTRLVFCETLNSRIVVSNDLCGDELPSAERECTGADIDAACGGRDNSARGGPTQQQRXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------KTGDTRS---PVVSNSQKGKEA--PSAVPGXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHILAAKEQSPMSRMGGPGR--DRAQYRFWLVMAIGGVAVGSFLAVVVFAVGQYRKERHRLRGIMALNEFPQDNYINPFAKQLSS-DLSDEDRSAF 391          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1164.1425.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2Y8_9PHAE7.600e-4439.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU42_ECTSI5.890e-3442.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 410..433
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..409
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 434..480
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availableTMHMMTMhelixcoord: 411..433

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1164contigL-elsbetiae_contig1164:20904..26627 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1164.1425.1mRNA_L-elsbetiae_contig1164.1425.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1164 20733..28547 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1164.1425.1 ID=prot_L-elsbetiae_contig1164.1425.1|Name=mRNA_L-elsbetiae_contig1164.1425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=481bp
MRNCRSLKRRRSWLEIGFAGCVMLSNPTQGGAAAAWPSLGTVWSAPQRQH
TPTQQQRPSVKPLQQTQQSSHHGTQATPAAAAAAAPPPLPPTSVRGKGTT
ARRHSSSTREHRPAEDSDDHSKLLRRALLLPGGVHEVEIVLHAGVGDWGA
CSPETCTQTRQVFCETRESRIVASGLCGDQLPEAERVCEGEDVAAVCGDA
AAAAAAAAKGGASVAVGVEGRGGAAGGGGSGPRPATLPSTGNTSATSRVK
SAAAAAAAASPSSATAGELSSNNNSGNGNGSSRDQRSGAEPAAGDNRENN
RASPPRKVPAPESPWKRATAPEAPAAPAEERDVAEAQDEGGSSEEGGSGA
DSIKPAPSRQQGETPGNPSASAAGSTPKSTPTKPNLASSGGRLNQMGGAG
HRSHRLEYRFWLVLAIGAGAVGSFMAVVVFSVGQYQKEQHRLRGIMALNE
FPQDNYINPFAQQLSSSDLPEDDRSAFTRL*
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