mRNA_L-elsbetiae_contig1164.1425.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1164.1425.1
Unique NamemRNA_L-elsbetiae_contig1164.1425.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1164.1425.1 vs. uniprot
Match: A0A6H5K2Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y8_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 3.390e-42
Identity = 188/482 (39.00%), Postives = 227/482 (47.10%), Query Frame = 1 
Query:  172 MRNCRSLKRRRSWLEIGFAGCVMLSNPTQGGAAAAWPSLGTVWSAPQRQHTPTQQQRPSVKPLQQTQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSDDHSKLLRRALLLPGGVHEVEIVLHAGVGDWGACSPETCTQTRQVFCETRESRIVASG-LCGDQLPEAERVCEGEDVAAVCG--DAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRDQRSGA--EPAAGDNRENNRASPPRKVPAPESPWKRATAPEAPAAPAEERDVAEAXXXXXXXXXXXXGADSIKPAPSRQQGETPGNPSASAAGSTPKSTPTKPNLASSGGRLNQMGGAGHRSHRLEYRFWLVLAIGAGAVGSFMAVVVFSVGQYQKEQHRLRGIMALNEFPQDNYINPFAQQLSSSDLPEDDRSAF 1602
            M   +SLKRRR WL    AGC +L+ P Q   AAAWPS GT+W  P    +P   +  + +P +Q   XXXXXXXXXXXXXXXX                                         R + LP  V EV I +    GDW ACS ETCTQTR VFCET +SRIV S  LCGD+LP AER C G D+  VCG  D++A         XXXXXXX                                                               S  Q++G    P   ++++       ++VP+        TA    +           XXXXX         D      SR Q E P      AA ST +S       A     +++MGG G   +R +YRFWLV+AIGAGAVGSF+AVVVF+VGQY+KE+HRLRGIM LNEFPQDNYINPFA+QLSS DL +DDRSAF
Sbjct:    1 MERGQSLKRRRGWL---LAGCSLLAAPVQ---AAAWPSWGTLW--PSLPLSPQSSRNQAAEPSRQNHXXXXXXXXXXXXXXXXXSLRGGRRSPSRQLRAGKVKK--------------------HRTIPLPSRVLEVAIAVQGRHGDWNACSAETCTQTRLVFCETLDSRIVVSNDLCGDELPAAERECTGADIDEVCGGRDSSARGGPTQQQTXXXXXXXADSTTLAENAG---------------------------------------------------GSNGQKTGDTHSPVVSNSQKG------KEVPSAIPRGGETTA----SXXXXXXXXXXXXXXXXPALKGSASRDDAADRSSRPQDEIP------AAASTNESAHIL--AAKQQSAMSRMGGPGR--NRAQYRFWLVMAIGAGAVGSFLAVVVFAVGQYRKERHRLRGIMPLNEFPQDNYINPFAKQLSS-DLSDDDRSAF 382
[Close]
BLAST of mRNA_L-elsbetiae_contig1164.1425.1 vs. uniprot
Match: D7FU42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU42_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 4.920e-33
Identity = 205/487 (42.09%), Postives = 236/487 (48.46%), Query Frame = 1 
Query:  172 MRNCRSLKRRRSWLEIGFAGCVMLSNPTQGGAAAAWPSLGTVWSAPQRQHTPTQQQRPSVKPLQQTQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSDDHSKLLR-------RALLLPGGVHEVEIVLHAGVGDWGACSPETCTQTRQVFCETRESRIVASG-LCGDQLPEAERVCEGEDVAAVCG--DAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRDQRSGAEPAAGDNRENNRASPPRKVPAPESPWKRATAPEAPAAPAEERDVAEAXXXXXXXXXXXXGADSIKPAPSRQQGETPGNPSASAAGSTPKSTPTKPNLASSGGRLNQMGGAGHRSHRLEYRFWLVLAIGAGAVGSFMAVVVFSVGQYQKEQHRLRGIMALNEFPQDNYINPFAQQLSSSDLPEDDRSAF 1602
            M   +SLKRRR WL    AGC +L+ P Q   AAAWPS GT+W  P     P   +  + +P +Q                          XXXXXXXXXXXXXXXXXXX          S+ LR       R + LP  V EV I +    GDW ACSPETCTQTR VFCET  SRIV S  LCGD+LP AER C G D+ A CG  D +A         XXXXXXXXXXXXXXXXXXXXXXX                                               + D RS   P   ++++   A  P  VP                           XXXXXXXXXXXX                                      A     +++MGG G    R +YRFWLV+AIG  AVGSF+AVVVF+VGQY+KE+HRLRGIMALNEFPQDNYINPFA+QLSS DL ++DRSAF
Sbjct:    2 MERGQSLKRRRGWL---LAGCSLLAAPVQ---AAAWPSWGTLW--PALPPAPQSSRNQAAEPSRQN-------------------------XXXXXXXXXXXXXXXXXXXPSLRGGRSSPSRQLRAGKVKKHRTIPLPSRVLEVAIAVQGRHGDWDACSPETCTQTRLVFCETLNSRIVVSNDLCGDELPSAERECTGADIDAACGGRDNSARGGPTQQQRXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------KTGDTRS---PVVSNSQKGKEA--PSAVPGXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHILAAKEQSPMSRMGGPGR--DRAQYRFWLVMAIGGVAVGSFLAVVVFAVGQYRKERHRLRGIMALNEFPQDNYINPFAKQLSS-DLSDEDRSAF 391
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1164.1425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2Y8_9PHAE3.390e-4239.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU42_ECTSI4.920e-3342.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1164contigL-elsbetiae_contig1164:20733..28547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_000720.1
Exons4
Model size3534
Cds size1443
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1164.1425.1prot_L-elsbetiae_contig1164.1425.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1164 20904..26627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.3834875-UTR-L-elsbetiae_contig1164:20732..209031622815367.3834875-UTR-L-elsbetiae_contig1164:20732..20903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1164 20733..20903 +
1691682864.0995035-UTR-L-elsbetiae_contig1164:20732..209031691682864.0995035-UTR-L-elsbetiae_contig1164:20732..20903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1164 20733..20903 +
1622815367.444249-UTR-L-elsbetiae_contig1164:26627..285471622815367.444249-UTR-L-elsbetiae_contig1164:26627..28547Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1164 26628..28547 +
1691682864.1514542-UTR-L-elsbetiae_contig1164:26627..285471691682864.1514542-UTR-L-elsbetiae_contig1164:26627..28547Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1164 26628..28547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815367.3974125-CDS-L-elsbetiae_contig1164:20903..209941622815367.3974125-CDS-L-elsbetiae_contig1164:20903..20994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1164 20904..20994 +
1691682864.1147482-CDS-L-elsbetiae_contig1164:20903..209941691682864.1147482-CDS-L-elsbetiae_contig1164:20903..20994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1164 20904..20994 +
1622815367.413522-CDS-L-elsbetiae_contig1164:21598..225901622815367.413522-CDS-L-elsbetiae_contig1164:21598..22590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1164 21599..22590 +
1691682864.1258802-CDS-L-elsbetiae_contig1164:21598..225901691682864.1258802-CDS-L-elsbetiae_contig1164:21598..22590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1164 21599..22590 +
1622815367.4236693-CDS-L-elsbetiae_contig1164:24297..245251622815367.4236693-CDS-L-elsbetiae_contig1164:24297..24525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1164 24298..24525 +
1691682864.1349704-CDS-L-elsbetiae_contig1164:24297..245251691682864.1349704-CDS-L-elsbetiae_contig1164:24297..24525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1164 24298..24525 +
1622815367.4337487-CDS-L-elsbetiae_contig1164:26495..266271622815367.4337487-CDS-L-elsbetiae_contig1164:26495..26627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1164 26496..26627 +
1691682864.1432133-CDS-L-elsbetiae_contig1164:26495..266271691682864.1432133-CDS-L-elsbetiae_contig1164:26495..26627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1164 26496..26627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1164.1425.1

>prot_L-elsbetiae_contig1164.1425.1 ID=prot_L-elsbetiae_contig1164.1425.1|Name=mRNA_L-elsbetiae_contig1164.1425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=481bp
MRNCRSLKRRRSWLEIGFAGCVMLSNPTQGGAAAAWPSLGTVWSAPQRQH
TPTQQQRPSVKPLQQTQQSSHHGTQATPAAAAAAAPPPLPPTSVRGKGTT
ARRHSSSTREHRPAEDSDDHSKLLRRALLLPGGVHEVEIVLHAGVGDWGA
CSPETCTQTRQVFCETRESRIVASGLCGDQLPEAERVCEGEDVAAVCGDA
AAAAAAAAKGGASVAVGVEGRGGAAGGGGSGPRPATLPSTGNTSATSRVK
SAAAAAAAASPSSATAGELSSNNNSGNGNGSSRDQRSGAEPAAGDNRENN
RASPPRKVPAPESPWKRATAPEAPAAPAEERDVAEAQDEGGSSEEGGSGA
DSIKPAPSRQQGETPGNPSASAAGSTPKSTPTKPNLASSGGRLNQMGGAG
HRSHRLEYRFWLVLAIGAGAVGSFMAVVVFSVGQYQKEQHRLRGIMALNE
FPQDNYINPFAQQLSSSDLPEDDRSAFTRL*
back to top

mRNA from alignment at L-elsbetiae_contig1164:20733..28547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1164.1425.1 ID=mRNA_L-elsbetiae_contig1164.1425.1|Name=mRNA_L-elsbetiae_contig1164.1425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7815bp|location=Sequence derived from alignment at L-elsbetiae_contig1164:20733..28547+ (Laminarionema elsbetiae ELsaHSoW15)
CCTACCTCTCGGCTCACCCACAATTGCGACTGCTGTCTCGAGGATATCTG
CGGATACCACGTGAACAACGGGCCGGGCGCCGAAACATAGTAGCGCAGGG
CCTGTATCAGACTTGTGCGCGGCAGGGACGTCGCCTGTTGGACTCTCTCT
CTCTGCTGCTCGGGGGGGTCAATGCGGAACTGCAGATCACTGAAGCGAAG
ACGCAGCTGGCTGGAGATTGGCTTCGCCGGATGCGTGATGCTGTCGAACC
CTACACAGGGAGGTGCGAATGTCTCCGGCGGAGTACTGCTGTGCGGCACG
GGAAAGCCAGCGTGTGTGTGATAATCGCTCTGCGTGGTCTATCTACCGCC
CGGTCTGTACGTCTGTCAGTTTTTGCCACTGGTATTGTGCTGGGTGCTCC
TATCCCGCTGCCGCCTCTCTGTACTACAATATTGCATTGGTTTCGTTAAC
GAGCATTGTAGTTTAGAGCAATGCCGATAAGGAGAAGGTAGGTTTGTCAG
CAGCAGCATATGATGCTGGTGCATGGTAGGAACCACCTCGTGTCGTAGGT
CAAAGACGTGCTCTTGGCCTCTTCGGCCAAGGGTTTTTTTCCGTCCCTGA
GTTCTCACGCTCTCTTGGTCCCTCCGCCTGTTTCGTGTATGTCGATATTG
TACTGAAATTGTCTTATTGTACCGAAGTACAACACATGCGTGGATGTGCG
GAGATATATCAGTGTCGGCGTGTGTGCACGCATGCCTCTCTCGCACATCG
CGGAAATGATACGCATCGAATTGTGCACCCATCTCCATCCGCTACCTCTG
GACTGTCTGTCGTTACTGACTCTATCTACTACATTCTCTCTCTCATTGTA
TCTTGATCCCCCTCAGGCGCCGCAGCAGCTTGGCCCTCGCTTGGCACGGT
ATGGTCGGCCCCGCAGCGCCAGCACACACCCACCCAGCAGCAACGCCCGA
GCGTAAAACCCCTGCAACAAACCCAACAGAGCAGCCACCACGGCACTCAA
GCAACACCGGCAGCAGCGGCAGCAGCAGCACCGCCACCTCTACCACCAAC
CTCCGTGCGCGGAAAAGGCACCACCGCCAGAAGACATAGTTCCTCCACCA
GAGAGCACCGCCCCGCCGAAGACAGCGACGACCACAGCAAGCTGCTCCGG
CGCGCCCTGCTGCTGCCCGGAGGGGTGCACGAGGTGGAGATCGTGCTGCA
CGCCGGGGTCGGCGACTGGGGGGCCTGTTCTCCGGAGACGTGCACGCAGA
CGAGACAAGTGTTTTGCGAGACCCGGGAGTCGAGGATCGTGGCGAGCGGT
CTCTGCGGGGACCAGCTGCCGGAGGCCGAAAGGGTCTGCGAGGGGGAAGA
CGTCGCGGCTGTTTGCGGTGATGCTGCTGCTGCTGCTGCTGCTGCTGCCA
AGGGGGGAGCATCGGTGGCGGTTGGCGTAGAAGGTCGAGGTGGCGCTGCT
GGCGGGGGGGGGTCAGGGCCGAGGCCGGCCACCCTTCCGTCCACTGGAAA
CACCAGTGCTACTAGCAGAGTCAAGAGCGCTGCTGCTGCTGCTGCTGCTG
CCTCGCCCTCCTCCGCTACCGCTGGCGAGCTCAGCAGCAACAACAACAGC
GGCAATGGCAATGGCAGCAGCCGCGACCAGCGTAGTGGCGCTGAACCCGC
CGCAGGTGACAACAGGGAAAATAATAGAGCCAGTCCTCCGAGGAAAGTCC
CGGCGCCCGAGTCGCCTTGGAAAAGGGCGACGGCCCCCGAGGCACCGGCG
GCACCAGCAGAGGAGAGAGATGTAGCCGAGGCGCAGGATGAGGGCGGCAG
CAGCGAGGAGGGCGGTAGCGGGGCTGACTCGATCAAACCCGCCCCTTCAC
GACAGCAGGTGTGTACATACAAGAGGAGTAGGTCACTTGGTTTACTGACG
TCATGCGAGGTTTTTCACCTTGGCCGAACCACGCCGTTCTGGCAGAGTTT
TTGCGGGGAACGTGTTGAAATCTTCGGATATTTTAGGTGTTTTTGTACTT
TATTTGCTGAACCAATATTGCGTCACTTAATGGAATACCGGTTGAAACCC
ACGGAGTCCCACCCCTCATGCGGTCTAGGTTCCATTTTTGATTCACTGAT
TTCTACCTATTCACCCATTTGTGGGACTTGGCGCACCGGTGTAGATGGTG
TGCGAGCGGCTGACGTACGTACGTAGGACATCAGCTTGAGGTGATCCAGG
CTGCGGCCAGGGGCGACGTGACGGTGTGTTGTATGCTGATGAATTAACAT
TGCCGGCACTAACCGGGCTAAATACCAATGAAAAGACGTCAGCCTTCAGC
GGGCACAGCACGTACGGTACTACTTGCTGTGCAGCAGTAACGCCGTTCTC
CTCAAGTGTTGGGTTTCTCAGAGGTGTCCCGACCGACGGGGGCACAAGTT
CTGCGTTAAGCGAAGGCAGTTTGTGCGTAGTGTGTATGTACTGCAGGCCG
CACAAGGGATCACACACCCTGGACCGACTTCCAGAGCTCGATTACTCCGT
AACGAAGAGGGTGCCAGCACCAAACGACACATTTTCGGACCACAGCCCTC
GACTAAAACTTTCCAACGCCACCCCCTTTCGGCACTGGCGCTCTTCTTGC
GGGGGGGGGGAATCGAGCTTTGGAAATATGTCCAGGGTGTGTGTGATGTC
TTGTGTCACCTACGGTACACTTGTCGAGATGCAGTCTGCCCTCTGTCCTG
TTGCGGTTTTGGAGCTCTGCCCCATTGGTGATACAGATGGAAGTCACTCC
ATTTGTCGACGTTATGGGGAAAACGTGGTCTAGTTGGTACCCCCGAACAC
CTTCTAGCAGGTAGGTCGTGAGTTCGAATCTCTGGCGGGAGCGACTTTTT
CTTGCGAAGTGAGCTTTTTCTCTCGCTTCCGCCCCTGCCAGCCGATAGCG
CTTAGCGTGTGTACACAAACTTCGACCTCACCGTCGACGAGGGAAAGGGA
CGGCTGAACCCTTCTCGCGGCGAAAATCTTAAGGGGGGCAAGCACCGCAG
ACGGCCTTGGGGAAAGGAACCCTTTTGTGTGTGACCACGGTTCAGTGCTA
CTCTCTGGCAAGTTGTCCTCGTGACAGGGAGCCAGCCCATCGAGCACTGG
AAATAAATGTGAAGAAGAAAAACAAGATAATAAAATAAAAAAATAAAAGT
AATGCGAACTCTCGTTTCGTGCGTGCAAATGAGCCGCCCGCCGGCTCCGC
TTCTTACACACACCGCGAAGCACGAACCGTGATGAGCCTGCTAACACACC
GCCGCCCCCTCGACCACCCTCTTGAAGCAACCATCCACCTACCGTAGGTG
ACATAAGATAAGACACCCCCTGGACCGAGATTGAAAGCTTGGTTACTCCG
CAACGAATACGATTCTAACCACAAACGCCTCATTTTCGGACAGCTCTCGA
CGAGATCTTTCCAATGCCGCCCTTTTCGGGACTGACGCTCTGCTTGCTGT
GGAGTACTTGAGCTTTGAAAATCGGTCCAGGGGGTGTCTTATTTTATGTC
ACCTACGGTACTCGGAGAGCACCACCAACGTAGTCCGCCTCCCGCCCCCC
GCCCCCCTTCCGCAGGGCGAAACCCCGGGCAACCCCTCCGCCTCCGCTGC
CGGCTCCACTCCGAAATCCACACCCACCAAGCCCAACCTAGCGTCGTCCG
GTGGGCGGCTGAACCAGATGGGAGGGGCCGGGCATAGGTCGCATCGCTTG
GAGTACAGGTTTTGGTTGGTGCTGGCGATCGGCGCCGGAGCCGTGGGGTC
TTTCATGGCCGTCGTTGTCTTTTCCGTGGGGCAGTATCAAAAGGTGGGAG
CATTTTATGTATGTTTCAAGGTATATTTTTAATTGATTCATGTACACGAA
TGTCAGCAGTCTACTACTGCTGTACGTCTAGTCTGCGAAGAAATCTACGG
TTATGTTTTTTGGGCGTTCAATGTCTCCTGTCTTGTCTGCTCTGGGAGCT
TCAAACATGGGAGTTTTTTTTTTTTTTTGTTCTTCACGCTTGTTTTCAGC
GCCCGAAAGGCTCCTAGCCGCAAGAGGGCACCTTGCCTGAGCTCTGAACC
GCCGTGGTCGCACAGAAAATCTTAAATCTTTGCAGGGGAGATGTTGAACT
CTTCTGATATTTAGGTTGTTTTTCTGCTCGCTTCGCCAAATACTACGTCT
CTGTATGGAATACCGTTTGAACCCCATATCGAGTCTTTGCTCTAGTGTGG
GGTAGGTTCCATCTTTGATTCTTTGTTTATTTTTAGAAGGTTGGGTTCCT
CTCCCCGAGGCGCCCCCACACCCACCTTCTGCGGTGCTTGCTTTCAACTT
TGTTTTTAACTCGAGGAGAGGTTCGGCCGTGTCCTCCCTCAAGTGTATTT
ATTGTACACACGACCTGTCTAAGCGTTTTCCGCTGGCCGGAACGGAGTAT
GCAGCTAACAACCATAGTGTTAATCCTTTCGAGTGTTTTACCGCTCCGTC
ATTCATGCAGAACACACATTAGTTGTACCTGTATGTGGTGAATTTGTGCG
GTTTTTCGGGAGACTGCCATGTTTGGTTCACGTGTGGGGCAAGAGCCACG
GTTGGTTTCTTCCAAGGTCTGGATCTGTATGTAGGGTACCCACAGAGTCG
TAAACACCCTACATGATTTTTTTGTGGGTTTTAAAAATAAACAAAGAATC
AAAGATGGAACGTAACCCACACTAGAGCAAAGACTCGATATGGGGTTCAA
ACGGTATTCCATACAGTTTTGTAACACTTCCGGTACCGTACCCTACACTT
CTGTGACTTGTGTAACAATACAATACCGTAACAGTAGTACATACCCGGAT
CTCACAGACCCTACAGATCCGGACCTTGGTATCTTCATCTTTGATATGGT
CTGCCTCTCTCTCTTGCTTGAGTGTTTATTTTTTGTTTCTTTGTGCCCCC
TGCCATCTCTCTTTCTCGACTGATCTGCACATGGCTGTTGCTGGCGTAGC
GCCCCCGTTCTTCCCTTGTCGTATATTTAGGCCGTTTTTTTTTATTATTT
TTTTTTTATTCACATTTATTTCCAGTGCTCGATGGGTTCCCTGCCACGAG
GACATCTGCCAGAGTACTGAACCGTGGTCACACAGAAGAGTTCCTTTCCC
CAAGGCCCCCACTCCCCCCGTCTGCGGTGCTTGCCTAAGATATGTATACA
TACTTGGTACATTTAAATGTAACTTATACCTCCCGTCCGTCTGGATGCTA
CCATTGCTCATTTCGACAAGATTTCAGGAAAGCAAAGAAAATAACCTCCC
CAGGTGTGGACGCGGGATTCCGTGGTGAATTTACAGTAGTGGTTCCACAC
ATAGCAGTTCCATACACAGCAATAAATATTAATATTAATATTGATCCGGC
GGCCGGTAGAAAAACACCTAAAATCAGACCCTCCGATTCGAATTTTGCAC
CAACAAAATTGTAATATGCTTCCAAGTATGGATTACGGATTTTGTGCGAG
TAAATATATCTTGGACCGGAAAATAAAGGGGTGTTAGTATGGCCTACAAC
AGCAGTCTCTCGGGAACGCCTCTTTTCATTTTTCACAGACTGGACGTAGG
TAAGTAGACTACTGGGACATTTAAACATCAACTAAAAATGGATAGGAGTG
TGAAAAGTGCAAACCTGCCCCCTGCACAGCTCTGGCAGGTCAATCAGTAA
CCAATGATTTATGTATTCGCTCTCTCGCTCTCTCTCCCTCTCTCTCTATC
CCTCTTGTCTTTGTCTCTTTCTCTTGCTTCGCTGAATGTTTTCGCTTGGC
CTCGCCTCGCCAGGAGCAGCACCGCTTGAGAGGCATCATGGCCCTCAACG
AGTTCCCCCAGGACAACTACATCAACCCTTTCGCCCAGCAGCTGTCATCG
TCAGACCTGCCCGAGGACGACCGGTCTGCCTTCACTAGACTATAGCTATC
TCTGTCTGCCGTTGCGCGTATTTATGTATGTATGTGGTTGTATGCTTTTA
CCCGTAATCCCTCAGTTCCCCCGCCGGGGGAGGGGGACGAACTTATTTTC
CGATTTTCTCTGCAGTGGAGAGGGTTTAGTGCCGATTTTCTCTGCAGTGG
AGAGGGTTTAGTGCCGAGAGATGCGCGCCACTAGAAAGACCTTGTCGATA
TATCTCCCAGTATAATACTTCCGTTGGTCGTACCCTTCTCTGTTGTGGAG
AAAATCGGCAAGAAAGTTCTCCCCCCCCGCGGCGGGGAGGGAGAACTCAG
AGGGGATTACGGTGTCTACGGACTTGATGAAGCTTGGAACCACGGCTATT
TTTTTAAGTAGCATTAGCAGGCGCGAGGGTTACTTCAGGGCCACCTGTTG
TAGGCGTAAGTAGCGCCATTCTTGTCGAGCTTGTTGTTTGCAAAGCGGGA
GGAAGGGGGGGGCAAAATAAAATGAAATGCACGCTGTGCGTCAGAAATTG
CTCCTATTATAGTTTTCATTTCCCAAGATTTTGCGGTAGTAAGTACATAC
ATCCACCGCCGGGAGAAGTTTTGGTGGGGCCCCGTGCGGCGTACATCAAC
GACTGGCGTCGTTTCATGCTCTCCCCTGAAGGGCCTCTCAACCTGATGCC
TTGTGGCTCTTGCTGCAGGAAATTTGGACGCACGGTTTTTCTAGCAAGAG
CCAAAACGCATCGGGCTGAGTGAGGCCTTTCGAGATGAGACCAAAATGCA
TGGAAGGGCGGTGCCGATCTAAATCTTTGGTCCACGCACGCCCCCGTGTC
AGAAAGCGCCCACCCAATGTGAGAGCTAAATACATACATACTGTAGCGGC
GGCGGCGGCGGTATTTTGCCGTAAAAGTGTGGGCTTCAAACATCTTGCCG
CAGCCGTACCCTCGCGAGCTTGCCCCCCTTCAAGCAAAATCCTCTTGCGG
TGATTTTTTTTTTTTTTTCTTACGGATACTCTGTACCCACACGAGGGTCC
GAGCAAATTTAGAAGCAACGCACCAATTTCATTTGGGGGCTGCGTAGTAA
CCGTATCTAGTGGTGTGTTTTTTCTTCCTCCCATGTCAGCGTGCTGTGTC
TATGTATCCTGGGCACAACTACAGTGATATTTCCCCCCTGCTAATGTATT
TTGAGATTGTTGTCGCTAAAAAATATCGTTTTGGGTGCCCCGGCGGGCCG
TCGTTTTGTCATTCGCGCCCGCGGCGCCCCTCGAGTGTACGTTGGCTGTG
GGTTCCCGTGGCGCGCTGGTATTTGGATATTTTACATTTCGCAGTTTTTG
TGTTGTTTTTTGGCGTGTTGTGTTGTTGAATTTTGAAATCGCAGCGTTCC
GGGCGGCCTATATACTTCAAATAGTTACGATGTGTTTGTTGCGTTTTTGT
GTTTTCTTGTTGTTTGGCAAAGCTTTTTGCACTTTGCATGTGCTGCAGTG
CAGTACCCGCCGCACGATAGCGCGGGCCTCAGCGCGGGCCTCCGGGCTCT
TGGTGGTGTTTCAGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTGGTG
GAGGAAGGGGGCCGGTGGGGCAGACGACGAATGAGCCAATAATGGGAGGG
AAAGAAAAGTTGTCATTACTCCCTTCGTCTGGCAGCCTTCATGGTGCGAT
CGGGCATGCCTTGCCTTCGCCGGCAGCGAGTTAACACTCGACTCTTTTAG
TATGAGGTGTCGCGGTGAGATCGGGCATCATTTGGCCACCAGCAAGCTGT
CAGCGATTCGTAGTCTGCCTGTAGGTAAGTCCAAGCAGTTATTTTTTTCC
AGCCACTGCCGAATCACTCCGGGATTTTTTTTGAGTGACTGACGTATCCC
CTTGTGACATACGACATATCGTGAGAAAGCCCTGATTCAGGCGGATCGTT
TGATCGGAGCTAATC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1164:20733..28547+

>mRNA_L-elsbetiae_contig1164.1425.1 ID=mRNA_L-elsbetiae_contig1164.1425.1|Name=mRNA_L-elsbetiae_contig1164.1425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2886bp|location=Sequence derived from alignment at L-elsbetiae_contig1164:20733..28547+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAACTGCAGATCACTGAAGCGAAGACGCAGCTGGCTGGAGATTGG
CTTCGCCGGATGCGTGATGCTGTCGAACCCTACACAGGGAGATGCGGAAC
TGCAGATCACTGAAGCGAAGACGCAGCTGGCTGGAGATTGGCTTCGCCGG
ATGCGTGATGCTGTCGAACCCTACACAGGGAGGCGCCGCAGCAGCTTGGC
CCTCGCTTGGCACGGTATGGTCGGCCCCGCAGCGCCAGCACACACCCACC
CAGCAGCAACGCCCGAGCGTAAAACCCCTGCAACAAACCCAACAGAGCAG
CCACCACGGCACTCAAGCAACACCGGCAGCAGCGGCAGCAGCAGCACCGC
CACCTCTACCACCAACCTCCGTGCGCGGAAAAGGCACCACCGCCAGAAGA
CATAGTTCCTCCACCAGAGAGCACCGCCCCGCCGAAGACAGCGACGACCA
CAGCAAGCTGCTCCGGCGCGCCCTGCTGCTGCCCGGAGGGGTGCACGAGG
TGGAGATCGTGCTGCACGCCGGGGTCGGCGACTGGGGGGCCTGTTCTCCG
GAGACGTGCACGCAGACGAGACAAGTGTTTTGCGAGACCCGGGAGTCGAG
GATCGTGGCGAGCGGTCTCTGCGGGGACCAGCTGCCGGAGGCCGAAAGGG
TCTGCGAGGGGGAAGACGTCGCGGCTGTTTGCGGTGATGCTGCTGCTGCT
GCTGCTGCTGCTGCCAAGGGGGGAGCATCGGTGGCGGTTGGCGTAGAAGG
TCGAGGTGGCGCTGCTGGCGGGGGGGGGTCAGGGCCGAGGCCGGCCACCC
TTCCGTCCACTGGAAACACCAGTGCTACTAGCAGAGTCAAGAGCGCTGCT
GCTGCTGCTGCTGCTGCCTCGCCCTCCTCCGCTACCGCTGGCGAGCTCAG
CAGCAACAACAACAGCGGCAATGGCAATGGCAGCAGCCGCGACCAGCGTA
GTGGCGCTGAACCCGCCGCAGGTGACAACAGGGAAAATAATAGAGCCAGT
CCTCCGAGGAAAGTCCCGGCGCCCGAGTCGCCTTGGAAAAGGGCGACGGC
CCCCGAGGCACCGGCGGCACCAGCAGAGGAGAGAGATGTAGCCGAGGCGC
AGGATGAGGGCGGCAGCAGCGAGGAGGGCGGTAGCGGGGCTGACTCGATC
AAACCCGCCCCTTCACGACAGCAGGCGCCGCAGCAGCTTGGCCCTCGCTT
GGCACGGTATGGTCGGCCCCGCAGCGCCAGCACACACCCACCCAGCAGCA
ACGCCCGAGCGTAAAACCCCTGCAACAAACCCAACAGAGCAGCCACCACG
GCACTCAAGCAACACCGGCAGCAGCGGCAGCAGCAGCACCGCCACCTCTA
CCACCAACCTCCGTGCGCGGAAAAGGCACCACCGCCAGAAGACATAGTTC
CTCCACCAGAGAGCACCGCCCCGCCGAAGACAGCGACGACCACAGCAAGC
TGCTCCGGCGCGCCCTGCTGCTGCCCGGAGGGGTGCACGAGGTGGAGATC
GTGCTGCACGCCGGGGTCGGCGACTGGGGGGCCTGTTCTCCGGAGACGTG
CACGCAGACGAGACAAGTGTTTTGCGAGACCCGGGAGTCGAGGATCGTGG
CGAGCGGTCTCTGCGGGGACCAGCTGCCGGAGGCCGAAAGGGTCTGCGAG
GGGGAAGACGTCGCGGCTGTTTGCGGTGATGCTGCTGCTGCTGCTGCTGC
TGCTGCCAAGGGGGGAGCATCGGTGGCGGTTGGCGTAGAAGGTCGAGGTG
GCGCTGCTGGCGGGGGGGGGTCAGGGCCGAGGCCGGCCACCCTTCCGTCC
ACTGGAAACACCAGTGCTACTAGCAGAGTCAAGAGCGCTGCTGCTGCTGC
TGCTGCTGCCTCGCCCTCCTCCGCTACCGCTGGCGAGCTCAGCAGCAACA
ACAACAGCGGCAATGGCAATGGCAGCAGCCGCGACCAGCGTAGTGGCGCT
GAACCCGCCGCAGGTGACAACAGGGAAAATAATAGAGCCAGTCCTCCGAG
GAAAGTCCCGGCGCCCGAGTCGCCTTGGAAAAGGGCGACGGCCCCCGAGG
CACCGGCGGCACCAGCAGAGGAGAGAGATGTAGCCGAGGCGCAGGATGAG
GGCGGCAGCAGCGAGGAGGGCGGTAGCGGGGCTGACTCGATCAAACCCGC
CCCTTCACGACAGCAGGGCGAAACCCCGGGCAACCCCTCCGCCTCCGCTG
CCGGCTCCACTCCGAAATCCACACCCACCAAGCCCAACCTAGCGTCGTCC
GGTGGGCGGCTGAACCAGATGGGAGGGGCCGGGCATAGGTCGCATCGCTT
GGAGTACAGGTTTTGGTTGGTGCTGGCGATCGGCGCCGGAGCCGTGGGGT
CTTTCATGGCCGTCGTTGTCTTTTCCGTGGGGCAGTATCAAAAGGGCGAA
ACCCCGGGCAACCCCTCCGCCTCCGCTGCCGGCTCCACTCCGAAATCCAC
ACCCACCAAGCCCAACCTAGCGTCGTCCGGTGGGCGGCTGAACCAGATGG
GAGGGGCCGGGCATAGGTCGCATCGCTTGGAGTACAGGTTTTGGTTGGTG
CTGGCGATCGGCGCCGGAGCCGTGGGGTCTTTCATGGCCGTCGTTGTCTT
TTCCGTGGGGCAGTATCAAAAGGAGCAGCACCGCTTGAGAGGCATCATGG
CCCTCAACGAGTTCCCCCAGGACAACTACATCAACCCTTTCGCCCAGCAG
CTGTCATCGTCAGACCTGCCCGAGGACGACCGGTCTGCCTTCACTAGACT
ATAGGAGCAGCACCGCTTGAGAGGCATCATGGCCCTCAACGAGTTCCCCC
AGGACAACTACATCAACCCTTTCGCCCAGCAGCTGTCATCGTCAGACCTG
CCCGAGGACGACCGGTCTGCCTTCACTAGACTATAG
back to top