prot_L-elsbetiae_contig1163.1417.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1163.1417.1
Unique Nameprot_L-elsbetiae_contig1163.1417.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length185
Homology
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A6H5KI74_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI74_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 6.890e-28
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPDGG 63
            GKLGDVYIPRDMRTG+PRGFAFVRY+++RDADDA+DRLDG R NGRELRIQYARKRRP GG
Sbjct:   47 GKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADDAVDRLDGTRFNGRELRIQYARKRRPGGG 107          
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: D8LGH4_ECTSI (Serine/arginine rich splicing factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH4_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 7.910e-25
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRP 60
            GKLGDVYIPRDMRTG+PRGFAFVRY+++RDAD A+DRLDG R NGRELRIQYARKRRP
Sbjct:   26 GKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADYAVDRLDGTRFNGRELRIQYARKRRP 83          
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A6H5KLI3_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLI3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.290e-23
Identity = 46/59 (77.97%), Postives = 56/59 (94.92%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 61
            G+LGDVY+PRD+RTG+PRGFAFVR+++QRDADDAIDR+DGE   GRELRIQYA+KRRP+
Sbjct:   51 GELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPE 109          
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A835ZAC4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.220e-19
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 61
            G++GDVYIPRD  TGDPRGFAFVRY++  DA++A+  +DG+ L+GR LRIQ+A +RRPD
Sbjct:   39 GEVGDVYIPRDKATGDPRGFAFVRYLDNHDAEEALTAMDGKELDGRTLRIQFAMQRRPD 97          
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A835YJN0_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJN0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.870e-16
Identity = 37/60 (61.67%), Postives = 51/60 (85.00%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPDG 62
            G++GDVYIPR+  TG  RGFAFVR++++RDA+DA+ R+DG+ L+GR LRIQ+A +RRP G
Sbjct:   35 GEIGDVYIPRERATGQMRGFAFVRFMDKRDAEDALHRMDGQDLDGRVLRIQFAMERRPRG 94          
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: UPI000C760F8E (serine/arginine-rich splicing factor 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C760F8E)

HSP 1 Score: 82.0 bits (201), Expect = 3.350e-16
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 61
            GK+GDVYIP+D RT + RGF FVRY  + DA+DAID LDG + +GREL +QYAR  RPD
Sbjct:   38 GKVGDVYIPKDYRTKENRGFGFVRYFNKDDAEDAIDALDGRKFDGRELSVQYARYDRPD 96          
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: UPI0014259DDB (serine/arginine-rich splicing factor 2-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259DDB)

HSP 1 Score: 80.1 bits (196), Expect = 3.780e-16
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 61
            G++GDVYIPRD  T + RGFAFVR+  +R  +DAIDR+DG  L+GRE+R+Q AR RRPD
Sbjct:   37 GEVGDVYIPRDRHTRESRGFAFVRFTSRRCGEDAIDRMDGSMLDGREIRVQEARYRRPD 95          
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A814EM62_ADIRI (Serine/arginine-rich splicing factor 2 n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814EM62_ADIRI)

HSP 1 Score: 81.3 bits (199), Expect = 3.940e-16
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPDGGXXXXXXXXXXXXXRSRSPR 82
            G +GD+YIPRD  +   RG+AF+RY+++RDA+DA+DR+DG  ++GRE+R+Q+AR  R   G             RSRSPR
Sbjct:   46 GPIGDIYIPRDQFSRSSRGYAFIRYLKKRDAEDALDRMDGTDVDGREIRVQFARYGRASTGDSREKGRHRRTRSRSRSPR 125          
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A8J5KC64_HOMAM (Serine/arginine-rich splicing factor 2-like n=15 Tax=Decapoda TaxID=6683 RepID=A0A8J5KC64_HOMAM)

HSP 1 Score: 79.3 bits (194), Expect = 5.630e-16
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 0
Query:    3 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 61
            G++GDVYIPRD  + + RGFAFVRY ++RDA+DA++ +DG RL+GRELR+Q AR  RP+
Sbjct:   38 GEIGDVYIPRDRFSRESRGFAFVRYYDRRDAEDAMEAMDGRRLDGRELRVQMARYGRPE 96          
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A0K8TM32_TABBR (Putative serine/arginine-rich splicing factor 2-like isoform x1 (Fragment) n=2 Tax=Brachycera TaxID=7203 RepID=A0A0K8TM32_TABBR)

HSP 1 Score: 81.3 bits (199), Expect = 6.040e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 0
Query:    1 RSGKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPDGGXXXXXXXXXXXXXRSRSPR 82
            R G++GD+YIPRD  T + RGFAFVR+ ++RDA+DA++ +DG  L+GRELR+Q AR  RP                RSRSPR
Sbjct:   36 RCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALEAMDGRVLDGRELRVQMARYGRPTSPHRRGGSGRGGRRRRSRSPR 117          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI74_9PHAE6.890e-2886.89RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LGH4_ECTSI7.910e-2586.21Serine/arginine rich splicing factor, putative n=1... [more]
A0A6H5KLI3_9PHAE5.290e-2377.97RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZAC4_9STRA8.220e-1964.41RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YJN0_9STRA2.870e-1661.67RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
UPI000C760F8E3.350e-1664.41serine/arginine-rich splicing factor 2-like n=1 Ta... [more]
UPI0014259DDB3.780e-1662.71serine/arginine-rich splicing factor 2-like n=1 Ta... [more]
A0A814EM62_ADIRI3.940e-1647.50Serine/arginine-rich splicing factor 2 n=3 Tax=Adi... [more]
A0A8J5KC64_HOMAM5.630e-1661.02Serine/arginine-rich splicing factor 2-like n=15 T... [more]
A0A0K8TM32_TABBR6.040e-1650.00Putative serine/arginine-rich splicing factor 2-li... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..74
e-value: 2.2E-16
score: 62.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 3..51
e-value: 2.3E-11
score: 43.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..57
score: 14.3
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 3..155
IPR034893Serine/arginine-rich splicing factor 2-likePANTHERPTHR23147:SF145SERINE/ARGININE-RICH SPLICING FACTOR 2coord: 3..155
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1163contigL-elsbetiae_contig1163:26212..27544 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1163.1417.1mRNA_L-elsbetiae_contig1163.1417.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1163 26212..27544 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1163.1417.1 ID=prot_L-elsbetiae_contig1163.1417.1|Name=mRNA_L-elsbetiae_contig1163.1417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
RSGKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGREL
RIQYARKRRPDGGGGGGGRDDRGGGGRSRSPRRRSRSRSPPRRRRSRSRS
RSRSRSPRSPPPAAAAVAAGDKKERRHRRSRSASPAEAPGRDGGGGGKRS
RSRSGGRGGGGDRKDKEDRNGDERGEERNGDGGRK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR034893SRSF2-like
IPR035979RBD_domain_sf