mRNA_L-elsbetiae_contig1163.1417.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1163.1417.1
Unique NamemRNA_L-elsbetiae_contig1163.1417.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A6H5KI74_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI74_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 6.890e-28
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    7 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPDGG 189
            GKLGDVYIPRDMRTG+PRGFAFVRY+++RDADDA+DRLDG R NGRELRIQYARKRRP GG
Sbjct:   47 GKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADDAVDRLDGTRFNGRELRIQYARKRRPGGG 107
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BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: D8LGH4_ECTSI (Serine/arginine rich splicing factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH4_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 7.910e-25
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    7 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRP 180
            GKLGDVYIPRDMRTG+PRGFAFVRY+++RDAD A+DRLDG R NGRELRIQYARKRRP
Sbjct:   26 GKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADYAVDRLDGTRFNGRELRIQYARKRRP 83
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BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A6H5KLI3_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLI3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.290e-23
Identity = 46/59 (77.97%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    7 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 183
            G+LGDVY+PRD+RTG+PRGFAFVR+++QRDADDAIDR+DGE   GRELRIQYA+KRRP+
Sbjct:   51 GELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPE 109
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BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A835ZAC4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.220e-19
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    7 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 183
            G++GDVYIPRD  TGDPRGFAFVRY++  DA++A+  +DG+ L+GR LRIQ+A +RRPD
Sbjct:   39 GEVGDVYIPRDKATGDPRGFAFVRYLDNHDAEEALTAMDGKELDGRTLRIQFAMQRRPD 97
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BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A835YJN0_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJN0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.870e-16
Identity = 37/60 (61.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    7 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPDG 186
            G++GDVYIPR+  TG  RGFAFVR++++RDA+DA+ R+DG+ L+GR LRIQ+A +RRP G
Sbjct:   35 GEIGDVYIPRERATGQMRGFAFVRFMDKRDAEDALHRMDGQDLDGRVLRIQFAMERRPRG 94
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BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: UPI000C760F8E (serine/arginine-rich splicing factor 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C760F8E)

HSP 1 Score: 82.0 bits (201), Expect = 3.350e-16
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 183
            GK+GDVYIP+D RT + RGF FVRY  + DA+DAID LDG + +GREL +QYAR  RPD
Sbjct:   38 GKVGDVYIPKDYRTKENRGFGFVRYFNKDDAEDAIDALDGRKFDGRELSVQYARYDRPD 96
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BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: UPI0014259DDB (serine/arginine-rich splicing factor 2-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259DDB)

HSP 1 Score: 80.1 bits (196), Expect = 3.780e-16
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    7 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 183
            G++GDVYIPRD  T + RGFAFVR+  +R  +DAIDR+DG  L+GRE+R+Q AR RRPD
Sbjct:   37 GEVGDVYIPRDRHTRESRGFAFVRFTSRRCGEDAIDRMDGSMLDGREIRVQEARYRRPD 95
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BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A814EM62_ADIRI (Serine/arginine-rich splicing factor 2 n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814EM62_ADIRI)

HSP 1 Score: 81.3 bits (199), Expect = 3.940e-16
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    7 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPDGGXXXXXXXXXXXXXRSRSPR 246
            G +GD+YIPRD  +   RG+AF+RY+++RDA+DA+DR+DG  ++GRE+R+Q+AR  R   G             RSRSPR
Sbjct:   46 GPIGDIYIPRDQFSRSSRGYAFIRYLKKRDAEDALDRMDGTDVDGREIRVQFARYGRASTGDSREKGRHRRTRSRSRSPR 125
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BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A8J5KC64_HOMAM (Serine/arginine-rich splicing factor 2-like n=15 Tax=Decapoda TaxID=6683 RepID=A0A8J5KC64_HOMAM)

HSP 1 Score: 79.3 bits (194), Expect = 5.630e-16
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    7 GKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPD 183
            G++GDVYIPRD  + + RGFAFVRY ++RDA+DA++ +DG RL+GRELR+Q AR  RP+
Sbjct:   38 GEIGDVYIPRDRFSRESRGFAFVRYYDRRDAEDAMEAMDGRRLDGRELRVQMARYGRPE 96
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BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Match: A0A0K8TM32_TABBR (Putative serine/arginine-rich splicing factor 2-like isoform x1 (Fragment) n=2 Tax=Brachycera TaxID=7203 RepID=A0A0K8TM32_TABBR)

HSP 1 Score: 81.3 bits (199), Expect = 6.040e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 RSGKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGRELRIQYARKRRPDGGXXXXXXXXXXXXXRSRSPR 246
            R G++GD+YIPRD  T + RGFAFVR+ ++RDA+DA++ +DG  L+GRELR+Q AR  RP                RSRSPR
Sbjct:   36 RCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALEAMDGRVLDGRELRVQMARYGRPTSPHRRGGSGRGGRRRRSRSPR 117
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1163.1417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI74_9PHAE6.890e-2886.89RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LGH4_ECTSI7.910e-2586.21Serine/arginine rich splicing factor, putative n=1... [more]
A0A6H5KLI3_9PHAE5.290e-2377.97RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZAC4_9STRA8.220e-1964.41RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YJN0_9STRA2.870e-1661.67RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
UPI000C760F8E3.350e-1664.41serine/arginine-rich splicing factor 2-like n=1 Ta... [more]
UPI0014259DDB3.780e-1662.71serine/arginine-rich splicing factor 2-like n=1 Ta... [more]
A0A814EM62_ADIRI3.940e-1647.50Serine/arginine-rich splicing factor 2 n=3 Tax=Adi... [more]
A0A8J5KC64_HOMAM5.630e-1661.02Serine/arginine-rich splicing factor 2-like n=15 T... [more]
A0A0K8TM32_TABBR6.040e-1650.00Putative serine/arginine-rich splicing factor 2-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1163contigL-elsbetiae_contig1163:26212..27544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue3.1e-21
Seed eggNOG ortholog2880.D8LGH4
KEGG koko:K12891
KEGG Pathwayko03040,ko05168,map03040,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.regulation of RNA splicing
EggNOG OGsKOG4207@1,KOG4207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Exons3
Model size555
Cds size555
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1163.1417.1prot_L-elsbetiae_contig1163.1417.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1163 26212..27544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815366.430108-CDS-L-elsbetiae_contig1163:26211..265791622815366.430108-CDS-L-elsbetiae_contig1163:26211..26579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1163 26212..26579 -
1691682863.4541376-CDS-L-elsbetiae_contig1163:26211..265791691682863.4541376-CDS-L-elsbetiae_contig1163:26211..26579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1163 26212..26579 -
1622815366.4414768-CDS-L-elsbetiae_contig1163:26708..267361622815366.4414768-CDS-L-elsbetiae_contig1163:26708..26736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1163 26709..26736 -
1691682863.4679139-CDS-L-elsbetiae_contig1163:26708..267361691682863.4679139-CDS-L-elsbetiae_contig1163:26708..26736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1163 26709..26736 -
1622815366.4516585-CDS-L-elsbetiae_contig1163:27385..275441622815366.4516585-CDS-L-elsbetiae_contig1163:27385..27544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1163 27386..27544 -
1691682863.478243-CDS-L-elsbetiae_contig1163:27385..275441691682863.478243-CDS-L-elsbetiae_contig1163:27385..27544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1163 27386..27544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1163.1417.1

>prot_L-elsbetiae_contig1163.1417.1 ID=prot_L-elsbetiae_contig1163.1417.1|Name=mRNA_L-elsbetiae_contig1163.1417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
RSGKLGDVYIPRDMRTGDPRGFAFVRYIEQRDADDAIDRLDGERLNGREL
RIQYARKRRPDGGGGGGGRDDRGGGGRSRSPRRRSRSRSPPRRRRSRSRS
RSRSRSPRSPPPAAAAVAAGDKKERRHRRSRSASPAEAPGRDGGGGGKRS
RSRSGGRGGGGDRKDKEDRNGDERGEERNGDGGRK
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mRNA from alignment at L-elsbetiae_contig1163:26212..27544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1163.1417.1 ID=mRNA_L-elsbetiae_contig1163.1417.1|Name=mRNA_L-elsbetiae_contig1163.1417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1333bp|location=Sequence derived from alignment at L-elsbetiae_contig1163:26212..27544- (Laminarionema elsbetiae ELsaHSoW15)
AGGTCGGGAAAGCTGGGAGATGTCTACATCCCCCGCGACATGAGGACCGG
CGACCCGCGGGGTTTCGCCTTCGTGCGCTACATCGAGCAGCGCGACGCCG
ACGACGCGATCGACAGGCTTGACGGGGAGAGGCTGAACGGCCGCGAGCTC
CGGATCCAGGTATGCGTCGTACGCTAAATGGTGAACAGGTGATTGAAGTA
GGTACCTGGTGACTTGGGTGAGAGGGGGTTTCAACGTCTACGAACACAAA
GGGGGTGTTCTGAGTATTGTGGCATTTGGGGCGGGGAGGGGGAGAGGCTG
AACGGGCCGCGAGCTCCGGGTCCAGGTATTTATGTATGTATCTGCGCACA
CCGTGACTGCTGTATATGGCCCGGCTCTTGGACCCCGAGCACCGCTCACT
TTCAGAGGCTTTATAACTGCCTGGTTTCTGTGTTGAAAGTCTTTTGTGCC
GGCCGAGCTTGGTGATCACCCTCGTCTGCCATCTCCCATCGGCTCGACGG
CGCTTTTTTGGCAGTTCGATTATAGGAGTATTTTAATGTTTGTATTTGGG
CGCGCCAATGCCCCTGTTTTCCAGCAGAGGGGGGCCGGTTTCGGAACATT
GAAACCAATCATGTCGCCTGTGCTGTTTCGCTTGCTTGGTAACAGAGTTA
GGGGGGGGGGCAAGGGTGGGGGGTGGGCGTTTCGTGGAAGATGTGAAATT
AGTTTGGAGTAGTTTTAAGACCAACACCATTCATTTTCTTGAATAATAAG
AGACGTCCGTACCATCCGCGTGGTGCCACTACATACTGTTTCTCCTCGCT
TTTACCAGTATGCCCGTAAACGCCGCCCGGACGGCGGTGGAGGAGGCGGC
GGAGGAGGGGGATACGGCGGCGGAGGCGGTTACGGCGGCGGAGGCGGCGG
TGGGCGCTACGGAGGCGGCGGTGGCGGTTACGGCGGCGGAGGCGGCGGCG
GTGGGCGCTACGGAGGCGGCGGCGGCGGCGGGCGCGACGATCGGGGGGGT
GGGGGCCGGAGCCGATCTCCCCGCCGCAGGTCGAGGAGCAGGTCCCCTCC
GCGCCGCCGGCGCAGCCGCAGCAGGTCCCGCTCGCGCTCGCGCTCGCCGC
GGTCCCCCCCCCCGGCGGCGGCGGCGGTGGCGGCGGGCGACAAGAAGGAG
CGGAGGCACCGCCGCTCCAGGTCGGCCAGCCCCGCGGAGGCGCCCGGCCG
CGACGGCGGCGGCGGCGGGAAGAGGAGCAGGAGCCGCAGCGGGGGGCGCG
GCGGAGGGGGCGATCGCAAGGACAAGGAAGACAGGAACGGCGACGAGCGT
GGGGAAGAGAGGAACGGGGACGGCGGCCGTAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1163:26212..27544-

>mRNA_L-elsbetiae_contig1163.1417.1 ID=mRNA_L-elsbetiae_contig1163.1417.1|Name=mRNA_L-elsbetiae_contig1163.1417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig1163:26212..27544- (Laminarionema elsbetiae ELsaHSoW15)
AGGTCGGGAAAGCTGGGAGATGTCTACATCCCCCGCGACATGAGGACCGG
CGACCCGCGGGGTTTCGCCTTCGTGCGCTACATCGAGCAGCGCGACGCCG
ACGACGCGATCGACAGGCTTGACGGGGAGAGGCTGAACGGCCGCGAGCTC
CGGATCCAGAGGTCGGGAAAGCTGGGAGATGTCTACATCCCCCGCGACAT
GAGGACCGGCGACCCGCGGGGTTTCGCCTTCGTGCGCTACATCGAGCAGC
GCGACGCCGACGACGCGATCGACAGGCTTGACGGGGAGAGGCTGAACGGC
CGCGAGCTCCGGATCCAGTATGCCCGTAAACGCCGCCCGGACGGCGTATG
CCCGTAAACGCCGCCCGGACGGCGGCGGCGGCGGCGGCGGGCGCGACGAT
CGGGGGGGTGGGGGCCGGAGCCGATCTCCCCGCCGCAGGTCGAGGAGCAG
GTCCCCTCCGCGCCGCCGGCGCAGCCGCAGCAGGTCCCGCTCGCGCTCGC
GCTCGCCGCGGTCCCCCCCCCCGGCGGCGGCGGCGGTGGCGGCGGGCGAC
AAGAAGGAGCGGAGGCACCGCCGCTCCAGGTCGGCCAGCCCCGCGGAGGC
GCCCGGCCGCGACGGCGGCGGCGGCGGGAAGAGGAGCAGGAGCCGCAGCG
GGGGGCGCGGCGGAGGGGGCGATCGCAAGGACAAGGAAGACAGGAACGGC
GACGAGCGTGGGGAAGAGAGGAACGGGGACGGCGGCCGTAAGGCGGCGGC
GGCGGCGGGCGCGACGATCGGGGGGGTGGGGGCCGGAGCCGATCTCCCCG
CCGCAGGTCGAGGAGCAGGTCCCCTCCGCGCCGCCGGCGCAGCCGCAGCA
GGTCCCGCTCGCGCTCGCGCTCGCCGCGGTCCCCCCCCCCGGCGGCGGCG
GCGGTGGCGGCGGGCGACAAGAAGGAGCGGAGGCACCGCCGCTCCAGGTC
GGCCAGCCCCGCGGAGGCGCCCGGCCGCGACGGCGGCGGCGGCGGGAAGA
GGAGCAGGAGCCGCAGCGGGGGGCGCGGCGGAGGGGGCGATCGCAAGGAC
AAGGAAGACAGGAACGGCGACGAGCGTGGGGAAGAGAGGAACGGGGACGG
CGGCCGTAAG
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