prot_L-elsbetiae_contig1130.1160.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1130.1160.1
Unique Nameprot_L-elsbetiae_contig1130.1160.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length130
Homology
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BLAST of mRNA_L-elsbetiae_contig1130.1160.1 vs. uniprot
Match: D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.650e-25
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 0 
Query:    4 ACARHAKAEGADTAVRLLDEMRAEMVPPDRAAFGLAASALALGGDWERAIEVLQEGADAGATPNSRAYGDVRDSASREGKGKRQVANKRLDKIVYSEIDADLADS 108
            ACAR  +AEGAD A  LLDEMR    PPD+A+FG AASALA  GDW  AIEVL+EGA  GA PN+ AY D+R +A +EG+ K  VAN+RL +I+Y E+D   AD+
Sbjct:  855 ACARDERAEGADAARNLLDEMRRSKFPPDKASFGPAASALASAGDWGEAIEVLKEGAAMGALPNNIAYEDIRAAAHQEGQLK--VANERLHEIIYPEVDPTAADA 957
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1130.1160.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXW0_ECTSI2.650e-2559.05PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..105
e-value: 6.2E-12
score: 47.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1130contigL-elsbetiae_contig1130:2546..4482 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1130.1160.1mRNA_L-elsbetiae_contig1130.1160.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1130 2518..4572 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1130.1160.1 ID=prot_L-elsbetiae_contig1130.1160.1|Name=mRNA_L-elsbetiae_contig1130.1160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MFAACARHAKAEGADTAVRLLDEMRAEMVPPDRAAFGLAASALALGGDWE
RAIEVLQEGADAGATPNSRAYGDVRDSASREGKGKRQVANKRLDKIVYSE
IDADLADSGGGGGGGGGGSGSGSDESASR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf