mRNA_L-elsbetiae_contig1130.1160.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1130.1160.1
Unique NamemRNA_L-elsbetiae_contig1130.1160.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1130.1160.1 vs. uniprot
Match: D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.190e-27
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 EIVGRLYTSMFAACARHAKAEGADTAVRLLDEMRAEMVPPDRAAFGLAASALALGGDWERAIEVLQEGADAGATPNSRAYGDVRDSASREGKGKRQVANKRLDKIVYSEIDADLADS 352
            E + RLY  +  ACAR  +AEGAD A  LLDEMR    PPD+A+FG AASALA  GDW  AIEVL+EGA  GA PN+ AY D+R +A +EG+ K  VAN+RL +I+Y E+D   AD+
Sbjct:  843 ENIARLYAGILLACARDERAEGADAARNLLDEMRRSKFPPDKASFGPAASALASAGDWGEAIEVLKEGAAMGALPNNIAYEDIRAAAHQEGQLK--VANERLHEIIYPEVDPTAADA 957
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1130.1160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXW0_ECTSI2.190e-2756.41PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1130contigL-elsbetiae_contig1130:2518..4572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue3.4e-22
Seed eggNOG ortholog2880.D7FXW0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size508
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1130.1160.1prot_L-elsbetiae_contig1130.1160.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1130 2546..4482 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815341.947798-UTR-L-elsbetiae_contig1130:2517..25451622815341.947798-UTR-L-elsbetiae_contig1130:2517..2545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1130 2518..2545 +
1691682849.3247566-UTR-L-elsbetiae_contig1130:2517..25451691682849.3247566-UTR-L-elsbetiae_contig1130:2517..2545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1130 2518..2545 +
1622815341.9914048-UTR-L-elsbetiae_contig1130:4482..45721622815341.9914048-UTR-L-elsbetiae_contig1130:4482..4572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1130 4483..4572 +
1691682849.3752913-UTR-L-elsbetiae_contig1130:4482..45721691682849.3752913-UTR-L-elsbetiae_contig1130:4482..4572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1130 4483..4572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815341.961379-CDS-L-elsbetiae_contig1130:2545..26191622815341.961379-CDS-L-elsbetiae_contig1130:2545..2619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1130 2546..2619 +
1691682849.33934-CDS-L-elsbetiae_contig1130:2545..26191691682849.33934-CDS-L-elsbetiae_contig1130:2545..2619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1130 2546..2619 +
1622815341.9696681-CDS-L-elsbetiae_contig1130:3000..30971622815341.9696681-CDS-L-elsbetiae_contig1130:3000..3097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1130 3001..3097 +
1691682849.3543906-CDS-L-elsbetiae_contig1130:3000..30971691682849.3543906-CDS-L-elsbetiae_contig1130:3000..3097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1130 3001..3097 +
1622815341.9784505-CDS-L-elsbetiae_contig1130:4263..44821622815341.9784505-CDS-L-elsbetiae_contig1130:4263..4482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1130 4264..4482 +
1691682849.3641672-CDS-L-elsbetiae_contig1130:4263..44821691682849.3641672-CDS-L-elsbetiae_contig1130:4263..4482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1130 4264..4482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1130.1160.1

>prot_L-elsbetiae_contig1130.1160.1 ID=prot_L-elsbetiae_contig1130.1160.1|Name=mRNA_L-elsbetiae_contig1130.1160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MFAACARHAKAEGADTAVRLLDEMRAEMVPPDRAAFGLAASALALGGDWE
RAIEVLQEGADAGATPNSRAYGDVRDSASREGKGKRQVANKRLDKIVYSE
IDADLADSGGGGGGGGGGSGSGSDESASR*
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mRNA from alignment at L-elsbetiae_contig1130:2518..4572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1130.1160.1 ID=mRNA_L-elsbetiae_contig1130.1160.1|Name=mRNA_L-elsbetiae_contig1130.1160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2055bp|location=Sequence derived from alignment at L-elsbetiae_contig1130:2518..4572+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGATCGTCGGTCGTCTGTACACCAGCATGTTCGCGGCCTGCGCGAGAC
ACGCGAAGGCAGAAGGCGCCGACACGGCGGTGCGTCTTCTCGACGAAATG
AGGTATGTTAGATACTTGTGCTATTTATGCACTTCGGACGTGTGTAATGT
CATACAATGTACGTTTCGGTACATGTATGTGTACGTACGTGCATGCTAAC
TTTTTGTACATACGTTCGTACTAGCGACGCATGTCTTACAGGTCGAATAT
TTGCAGGAGCTAGACGTTGTTGTTGTTGTTGTTGTTGGTGTTGGTGGTGG
TGGTGGTGTTGTGTGGTGGCGTTGTTGTTGTTGTTGTTATTGCCGCTGCC
GCTGCTGCTGATGCGGTTCGTGGCGATGCCACTGCTGTTGTTGTTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGTGGTGGTTTTCGCATTCGCAGGGCTGAAATGGTCCCCC
CAGACAGGGCCGCCTTTGGCCTGGCAGCATCGGCGCTGGCTTTGGGTGGG
GACTGGGAAAGGGCCATCGAGGTCCTTCAGGTGGGTGCCCCCAATCGGGA
TCTATATCCTATATCGCCCAGTAAGCCCCTCCTGGCGAGACTGTCATGTT
CGCGGGTATTTGATGTAAATACATATCGTTTTTTTTTTTTGCGGCTTGTG
TGTTATCGTATTGCCCCGCACACCGAAAATTGGCAATGAACGCAACACAC
CGTCTTTTTTATTTTTTATTTCACGGATCGTCCATGCTATCCGCAGTGGC
AGTGTTACCTACGCGACAATGTCAATGTTTCGCGATTCTGTGCCCTACTT
GGTCTCTGCGTGCATGCCGTGCTTTGGCACCCCAAGTTGGAGTCGACCTA
CCAAGTGTCCGCGTGCATGTGGCCCTCACCGGTGCGGCTCTACAATACAA
AGTTGCCTCTCATCTCGTCCCCTTTTTGTTTTTCACCGAGCCCGGTTCGG
TTCTGTTTTCGATTGTTGTGCCGGTTCGCACGCAGCAAGGGTTTCCATCG
ACGTGCAGCTGGCATTATAGGTTGGCCCCTCCTCCTTCCACTTGTCTTTT
CCTGGAACGCTTCCCTCTTACCGTCATCAGCCGTCGACGTCCGGTGAAAA
AAACGTCGTTACAGGGGGACTGCTGTAGACATGCAAACCCTTTTCCTCGC
CGCCTCCAACTGCTGTCAGTTATTTATGTTATATTTATTTACATTGCCGA
ATAGAGAGGAGAGGAATAAGAGAAAGCCAAGAGCAAAGCAGAGCCGATGA
CATGTCGTGCGGCTAAAAAGGAAAAAAAAACAAAATCAAGATATATGTAT
CCATGCGTACGTGCGCGCGCGCGCATTGGGCACACAACGCCCCCGGCCCG
GGTTAATCTCCCCCCCCCCGTCCGTCGGTAGGATATATATACTCAAAAAC
TTTTTTTTTATTGCCCTTTAAACTCTTTGCTGCTTCTCCGTGCGTCATGT
ACCTATGTATGTACACAAAACTTCGCCGCTCTGATTGGCGGCAAGCGAGC
ACCTGTTTTTTTTTAAGCGCTGCTTGTGCTGTGTTTTTTTCGCGCGGCAG
GCAAACTCTTGATTCGATCGTGGATGGATATTGTATAAGGTGTCTCATGC
CACATGTTCGTGTGTAGGTATATGTACTTGTGTATTTACAGATATATTGT
ACGTGTTTGTGTGTGTGTTTTTTTTTTTGGTTTTTGGTTTGCACAGGAGG
GCGCGGATGCTGGCGCGACCCCCAACAGTCGCGCCTATGGAGACGTGCGA
GACAGCGCGAGCCGGGAGGGAAAGGGAAAGCGTCAGGTCGCAAACAAACG
CCTCGACAAAATCGTTTATTCCGAGATTGATGCCGATCTGGCCGACAGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGTGGCAGTGGCAGTGATGAA
TCGGCGTCGAGATGAAGGCTGTTTTTTTTCGGCTGCCCGTCGGAAAATAA
GTAGTGCCGCGTGTACGTGGGGGCTGGGTGTACGTGCGCGGCTGCTGGCG
GTTTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1130:2518..4572+

>mRNA_L-elsbetiae_contig1130.1160.1 ID=mRNA_L-elsbetiae_contig1130.1160.1|Name=mRNA_L-elsbetiae_contig1130.1160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig1130:2518..4572+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGCGGCCTGCGCGAGACACGCGAAGGCAGAAGGCGCCGACACGGC
GGTGCGTCTTCTCGACGAAATGAGATGTTCGCGGCCTGCGCGAGACACGC
GAAGGCAGAAGGCGCCGACACGGCGGTGCGTCTTCTCGACGAAATGAGGG
CTGAAATGGTCCCCCCAGACAGGGCCGCCTTTGGCCTGGCAGCATCGGCG
CTGGCTTTGGGTGGGGACTGGGAAAGGGCCATCGAGGTCCTTCAGGGCTG
AAATGGTCCCCCCAGACAGGGCCGCCTTTGGCCTGGCAGCATCGGCGCTG
GCTTTGGGTGGGGACTGGGAAAGGGCCATCGAGGTCCTTCAGGAGGGCGC
GGATGCTGGCGCGACCCCCAACAGTCGCGCCTATGGAGACGTGCGAGACA
GCGCGAGCCGGGAGGGAAAGGGAAAGCGTCAGGTCGCAAACAAACGCCTC
GACAAAATCGTTTATTCCGAGATTGATGCCGATCTGGCCGACAGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCAGTGGCAGTGGCAGTGATGAATCGG
CGTCGAGATGAGAGGGCGCGGATGCTGGCGCGACCCCCAACAGTCGCGCC
TATGGAGACGTGCGAGACAGCGCGAGCCGGGAGGGAAAGGGAAAGCGTCA
GGTCGCAAACAAACGCCTCGACAAAATCGTTTATTCCGAGATTGATGCCG
ATCTGGCCGACAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGTGGC
AGTGGCAGTGATGAATCGGCGTCGAGATGA
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