prot_L-elsbetiae_contig10655.624.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig10655.624.1
Unique Name	prot_L-elsbetiae_contig10655.624.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	161

Homology

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BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 2.390e-79
Identity = 143/165 (86.67%), Postives = 149/165 (90.30%), Query Frame = 0

Query:    3 MGYGYGGPMNGMMPG------PGMDMGAXXXXXXXXXXXXXXKDKVAKAKAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 161
            MGYGYGGPMNGMMPG             XXXXXXXXXXXXXXKDKVAKAKA SSNKFKRVAGGKSWEDETLAEWP+NDYRLFVGDLGNEVTDDNLAGAFRKY SFAKA+IIREKWNKKS+GYGFVSFLDGMDMLKALREQ GKYLGNRPMKISKS+WK+RDVKE+
Sbjct:  336 MGYGYGGPMNGMMPGGXXXXXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500

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BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 1.370e-73
Identity = 114/123 (92.68%), Postives = 120/123 (97.56%), Query Frame = 0

Query:   39 KDKVAKAKAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 161
            KDKVAKAKA SSNKFKRVAGGKSWEDETLAEWP+NDYRLFVGDLGNEVTDDNLAGAFRKY SFAKA++IREKWNKKS+GYGFVSFLDGMDMLKALREQ GKYLGNRPMKISKS+WK+RDVKEV
Sbjct:  397 KDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEV 519

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BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 177 bits (450), Expect = 8.090e-52
Identity = 81/110 (73.64%), Postives = 96/110 (87.27%), Query Frame = 0

Query:   52 KFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 161
            KF RV GG +W+D TL EWP+ND+RLFVGDLGNEVTD+NLA AF  YASF KA+++REK N KS+GYGFVSF DG DM++ALRE+NGKYLGNRPMKISKSSW +R++KEV
Sbjct:  235 KFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEV 344

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BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A7S2RJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA)

HSP 1 Score: 164 bits (414), Expect = 4.160e-47
Identity = 73/116 (62.93%), Postives = 94/116 (81.03%), Query Frame = 0

Query:   46 KAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 161
            K+A+  K  R A G+ W D+TL EWP+ND+RLFVGD+GNEVTDD L+ AF KYASFAKA+++R+K+  KS+GYGF SF+D  D  KALRE NGKY+GNRP+K+ KS W++RD+KEV
Sbjct:  167 KSATEKKQVRTAAGQVWVDKTLDEWPENDFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFIDPFDCAKALREMNGKYIGNRPIKLRKSEWRERDIKEV 282

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BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: T0QBK6_SAPDV (RRM domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QBK6_SAPDV)

HSP 1 Score: 162 bits (411), Expect = 7.890e-47
Identity = 77/120 (64.17%), Postives = 92/120 (76.67%), Query Frame = 0

Query:   42 VAKAKAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 161
            VA A++ S  KF RVA GK WED TLAEWP+NDYRLF GDLGNEV D+ L+ AF  YASFA A+++R+K   KS+GYGFVSFLD  D  KA+RE NGKY+GNRP+KISK  W+DR +  V
Sbjct:  150 VANAQSNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLSQAFSTYASFAMAKVVRDKLTHKSKGYGFVSFLDPFDAAKAMREMNGKYIGNRPVKISKGKWEDRAIDVV 269

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BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A1V9ZH87_9STRA (RNA-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZH87_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.540e-46
Identity = 78/120 (65.00%), Postives = 90/120 (75.00%), Query Frame = 0

Query:   42 VAKAKAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 161
            VA A + S  KF RVA  K WED TLAEWPDNDYRLF GDLGNEV D+ L  AF  Y+SFA AR++R+K   KSRGYGFVSFLD +D  KA+RE NGKY+GNRP+KISK  W+DR +  V
Sbjct:  142 VANAASNSDKKFLRVAADKVWEDSTLAEWPDNDYRLFCGDLGNEVNDELLCQAFSIYSSFAMARVVRDKLTHKSRGYGFVSFLDPLDAAKAMREMNGKYIGNRPVKISKGKWQDRALDVV 261

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BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.910e-46
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = 0

Query:   55 RVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 161
            R AGGK+WED+TL EWP+ND+RLFVGDLG + T   L   FRKY SFAKARI R++   K R YGFVSFLDGMDM+KALREQNGKY GNRPMK+SKS+WK+RD  E+
Sbjct:   96 RSAGGKTWEDKTLEEWPENDFRLFVGDLGADTTVPMLEQIFRKYPSFAKARICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEI 202

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BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A485L606_9STRA (Aste57867_16091 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L606_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.030e-46
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 0

Query:   42 VAKAKAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 161
            VA A      KF RVA GK WED TL+EWPDND+RLF GDLGNEVTDD LA AF +YA+FA AR++R+K+  KS+G+GFVSF+DG+D +KALRE NGKY+G+RP+K++K  W++R +  V
Sbjct:  178 VAAAPPPPDKKFLRVAAGKVWEDSTLSEWPDNDFRLFCGDLGNEVTDDLLAQAFSQYATFAMARVVRDKFTHKSKGFGFVSFMDGLDAMKALREMNGKYIGSRPVKMTKGKWQERALDVV 297

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BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: D8TJ50_VOLCA (RRM domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TJ50_VOLCA)

HSP 1 Score: 160 bits (406), Expect = 5.360e-46
Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 0

Query:   55 RVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 161
            R AGG+ W D TL EWPDND+R+FVGD+GNEVTDD LA +F KY+SFAKA+++R+   KKS+GYGFVSFLDG D  KALRE NGKY+GNRP K+SKSSW +R V++V
Sbjct:  169 REAGGQKWVDPTLNEWPDNDFRIFVGDIGNEVTDDLLAKSFSKYSSFAKAKVVRDPRTKKSKGYGFVSFLDGNDFAKALREMNGKYIGNRPCKLSKSSWDERTVRKV 275

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BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A2K3E140_CHLRE (RRM domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E140_CHLRE)

HSP 1 Score: 160 bits (405), Expect = 1.010e-45
Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 0

Query:   55 RVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 161
            R AGG+ W D TL EWPDND+R+FVGD+GNEVTDD LA +F KY+SFAKA+I+R+   KKS+GYGFVSFLDG D  KALRE NGKY+GNRP K+SKS+W +R V++V
Sbjct:  180 RGAGGEKWVDPTLNEWPDNDFRIFVGDIGNEVTDDLLAKSFSKYSSFAKAKIVRDPRTKKSKGYGFVSFLDGQDFAKALREMNGKYIGNRPCKLSKSTWDERTVRKV 286

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LJT5_ECTSI	2.390e-79	86.67	Temporarily Assigned Gene name family member (Tag-...	[more]
A0A6H5KAJ6_9PHAE	1.370e-73	92.68	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A836CHC6_9STRA	8.090e-52	73.64	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S2RJZ2_9STRA	4.160e-47	62.93	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
T0QBK6_SAPDV	7.890e-47	64.17	RRM domain-containing protein n=1 Tax=Saprolegnia ...	[more]
A0A1V9ZH87_9STRA	2.540e-46	65.00	RNA-binding protein n=1 Tax=Thraustotheca clavata ...	[more]
A0A7S1XX46_9STRA	2.910e-46	70.09	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A485L606_9STRA	3.030e-46	61.67	Aste57867_16091 protein n=1 Tax=Aphanomyces stella...	[more]
D8TJ50_VOLCA	5.360e-46	68.22	RRM domain-containing protein n=1 Tax=Volvox carte...	[more]
A0A2K3E140_CHLRE	1.010e-45	68.22	RRM domain-containing protein n=3 Tax=Chlamydomona...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 76..149 e-value: 2.7E-16 score: 70.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 77..147 e-value: 4.9E-16 score: 58.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 75..153 score: 15.699
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 31..160 e-value: 4.0E-20 score: 74.4
None	No IPR available	PANTHER	PTHR13952:SF8	RRM-CONTAINING PROTEIN-RELATED	coord: 34..160
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 34..160
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..38
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 39..161
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 34..38
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 23..33
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 62..152

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig10655	contig	L-elsbetiae_contig10655:4043..5771 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig10655.624.1	mRNA_L-elsbetiae_contig10655.624.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig10655 4019..5771 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig10655.624.1 ID=prot_L-elsbetiae_contig10655.624.1|Name=mRNA_L-elsbetiae_contig10655.624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MGMGYGYGGPMNGMMPGPGMDMGAAAAAGGAAAAAAGGKDKVAKAKAASS
NKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYAS
FAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISK
SSWKDRDVKEV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf