mRNA_L-elsbetiae_contig10655.624.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI) HSP 1 Score: 247 bits (630), Expect = 8.100e-77 Identity = 144/174 (82.76%), Postives = 150/174 (86.21%), Query Frame = 1 Query: 4 GPYPDGGMGXXXXXXGPMNGMMPG------PGMDMGAXXXXXXXXXXXXXXXDKVAKAKAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 507 GPYPDG MG GPMNGMMPG XXXXXXXXXXXXXX DKVAKAKA SSNKFKRVAGGKSWEDETLAEWP+NDYRLFVGDLGNEVTDDNLAGAFRKY SFAKA+IIREKWNKKS+GYGFVSFLDGMDMLKALREQ GKYLGNRPMKISKS+WK+RDVKE+ Sbjct: 329 GPYPDGSMGYGYG--GPMNGMMPGGXXXXXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE) HSP 1 Score: 236 bits (603), Expect = 1.050e-72 Identity = 113/122 (92.62%), Postives = 119/122 (97.54%), Query Frame = 1 Query: 142 DKVAKAKAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 507 DKVAKAKA SSNKFKRVAGGKSWEDETLAEWP+NDYRLFVGDLGNEVTDDNLAGAFRKY SFAKA++IREKWNKKS+GYGFVSFLDGMDMLKALREQ GKYLGNRPMKISKS+WK+RDVKEV Sbjct: 398 DKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEV 519
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA) HSP 1 Score: 177 bits (450), Expect = 1.090e-51 Identity = 81/110 (73.64%), Postives = 96/110 (87.27%), Query Frame = 1 Query: 178 KFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 507 KF RV GG +W+D TL EWP+ND+RLFVGDLGNEVTD+NLA AF YASF KA+++REK N KS+GYGFVSF DG DM++ALRE+NGKYLGNRPMKISKSSW +R++KEV Sbjct: 235 KFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEV 344
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A7S2RJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA) HSP 1 Score: 164 bits (414), Expect = 5.600e-47 Identity = 73/116 (62.93%), Postives = 94/116 (81.03%), Query Frame = 1 Query: 160 KAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 507 K+A+ K R A G+ W D+TL EWP+ND+RLFVGD+GNEVTDD L+ AF KYASFAKA+++R+K+ KS+GYGF SF+D D KALRE NGKY+GNRP+K+ KS W++RD+KEV Sbjct: 167 KSATEKKQVRTAAGQVWVDKTLDEWPENDFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFIDPFDCAKALREMNGKYIGNRPIKLRKSEWRERDIKEV 282
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: T0QBK6_SAPDV (RRM domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QBK6_SAPDV) HSP 1 Score: 162 bits (410), Expect = 1.500e-46 Identity = 77/120 (64.17%), Postives = 92/120 (76.67%), Query Frame = 1 Query: 148 VAKAKAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 507 VA A++ S KF RVA GK WED TLAEWP+NDYRLF GDLGNEV D+ L+ AF YASFA A+++R+K KS+GYGFVSFLD D KA+RE NGKY+GNRP+KISK W+DR + V Sbjct: 150 VANAQSNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLSQAFSTYASFAMAKVVRDKLTHKSKGYGFVSFLDPFDAAKAMREMNGKYIGNRPVKISKGKWEDRAIDVV 269
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA) HSP 1 Score: 159 bits (402), Expect = 3.910e-46 Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = 1 Query: 187 RVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 507 R AGGK+WED+TL EWP+ND+RLFVGDLG + T L FRKY SFAKARI R++ K R YGFVSFLDGMDM+KALREQNGKY GNRPMK+SKS+WK+RD E+ Sbjct: 96 RSAGGKTWEDKTLEEWPENDFRLFVGDLGADTTVPMLEQIFRKYPSFAKARICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEI 202
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A1V9ZH87_9STRA (RNA-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZH87_9STRA) HSP 1 Score: 160 bits (406), Expect = 4.840e-46 Identity = 78/120 (65.00%), Postives = 90/120 (75.00%), Query Frame = 1 Query: 148 VAKAKAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 507 VA A + S KF RVA K WED TLAEWPDNDYRLF GDLGNEV D+ L AF Y+SFA AR++R+K KSRGYGFVSFLD +D KA+RE NGKY+GNRP+KISK W+DR + V Sbjct: 142 VANAASNSDKKFLRVAADKVWEDSTLAEWPDNDYRLFCGDLGNEVNDELLCQAFSIYSSFAMARVVRDKLTHKSRGYGFVSFLDPLDAAKAMREMNGKYIGNRPVKISKGKWQDRALDVV 261
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A485L606_9STRA (Aste57867_16091 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L606_9STRA) HSP 1 Score: 161 bits (408), Expect = 5.760e-46 Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 1 Query: 148 VAKAKAASSNKFKRVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 507 VA A KF RVA GK WED TL+EWPDND+RLF GDLGNEVTDD LA AF +YA+FA AR++R+K+ KS+G+GFVSF+DG+D +KALRE NGKY+G+RP+K++K W++R + V Sbjct: 178 VAAAPPPPDKKFLRVAAGKVWEDSTLSEWPDNDFRLFCGDLGNEVTDDLLAQAFSQYATFAMARVVRDKFTHKSKGFGFVSFMDGLDAMKALREMNGKYIGSRPVKMTKGKWQERALDVV 297
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: D8TJ50_VOLCA (RRM domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TJ50_VOLCA) HSP 1 Score: 160 bits (406), Expect = 7.210e-46 Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 1 Query: 187 RVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 507 R AGG+ W D TL EWPDND+R+FVGD+GNEVTDD LA +F KY+SFAKA+++R+ KKS+GYGFVSFLDG D KALRE NGKY+GNRP K+SKSSW +R V++V Sbjct: 169 REAGGQKWVDPTLNEWPDNDFRIFVGDIGNEVTDDLLAKSFSKYSSFAKAKVVRDPRTKKSKGYGFVSFLDGNDFAKALREMNGKYIGNRPCKLSKSSWDERTVRKV 275
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Match: A0A2K3E140_CHLRE (RRM domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E140_CHLRE) HSP 1 Score: 160 bits (405), Expect = 1.360e-45 Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 1 Query: 187 RVAGGKSWEDETLAEWPDNDYRLFVGDLGNEVTDDNLAGAFRKYASFAKARIIREKWNKKSRGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEV 507 R AGG+ W D TL EWPDND+R+FVGD+GNEVTDD LA +F KY+SFAKA+I+R+ KKS+GYGFVSFLDG D KALRE NGKY+GNRP K+SKS+W +R V++V Sbjct: 180 RGAGGEKWVDPTLNEWPDNDFRIFVGDIGNEVTDDLLAKSFSKYSSFAKAKIVRDPRTKKSKGYGFVSFLDGQDFAKALREMNGKYIGNRPCKLSKSTWDERTVRKV 286 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10655.624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10655.624.1 >prot_L-elsbetiae_contig10655.624.1 ID=prot_L-elsbetiae_contig10655.624.1|Name=mRNA_L-elsbetiae_contig10655.624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp MGMGYGYGGPMNGMMPGPGMDMGAAAAAGGAAAAAAGGKDKVAKAKAASSback to top mRNA from alignment at L-elsbetiae_contig10655:4019..5771+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10655.624.1 ID=mRNA_L-elsbetiae_contig10655.624.1|Name=mRNA_L-elsbetiae_contig10655.624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1753bp|location=Sequence derived from alignment at L-elsbetiae_contig10655:4019..5771+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10655:4019..5771+ >mRNA_L-elsbetiae_contig10655.624.1 ID=mRNA_L-elsbetiae_contig10655.624.1|Name=mRNA_L-elsbetiae_contig10655.624.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig10655:4019..5771+ (Laminarionema elsbetiae ELsaHSoW15)back to top |