prot_L-elsbetiae_contig10649.613.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10649.613.1
Unique Nameprot_L-elsbetiae_contig10649.613.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length149
Homology
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BLAST of mRNA_L-elsbetiae_contig10649.613.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.920e-38
Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = 0 
Query:   27 AAPGPFSRLSLCVMKRGKVSSNTLTVFAKGVRSGGGRLSDRYTHGDTTHVVVDASLARSWDKIDDYFSGWDDLEDIDAAGRAAEARTGAPGGVPVVSSEWVSECLRLSAVVATDRYLLAPPP 148
            AA GPFS LSLCV++ G V++NT+    +  R GGG++S  YT GDTTH+V DASLA SW+K D YFSGWDD ED+   G A   R   P GVPVVSSEW+SECLR S VVA D Y L PPP
Sbjct:   56 AASGPFSGLSLCVVRLGSVTNNTVGTLPREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKFDLYFSGWDDFEDV-VDGAATAGRGRMPDGVPVVSSEWMSECLRRSEVVAADAYRLTPPP 176
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BLAST of mRNA_L-elsbetiae_contig10649.613.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 5.340e-38
Identity = 72/121 (59.50%), Postives = 86/121 (71.07%), Query Frame = 0 
Query:   27 AAPGPFSRLSLCVMKRGKVSSNTLTVFAKGVRSGGGRLSDRYTHGDTTHVVVDASLARSWDKIDDYFSGWDDLEDIDAAGRAAEARTGAPGGVPVVSSEWVSECLRLSAVVATDRYLLAPP 147
            AA GPFS LSLCV+ +G V++NT+    +  R GGG++S  YT GDTTH+V DASLA SW+K+DDYFSGWDD ED+   G A   R   P GVPVVSSEW+SECLR S VV  + Y L PP
Sbjct:   56 AASGPFSGLSLCVVSQGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDV-VDGAATAGRGRMPDGVPVVSSEWMSECLRRSEVVTAEAYRLTPP 175
[Close]
BLAST of mRNA_L-elsbetiae_contig10649.613.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.660e-35
Identity = 71/123 (57.72%), Postives = 86/123 (69.92%), Query Frame = 0 
Query:   27 AAPGPFSRLSLCVMKRGKVSSNTLTVFAKGVRSGGGRLSDRYTHGDTTHVVVDASLARSWDKIDDYFSGW---DDLEDIDAAGRAAEARTGAPGGVPVVSSEWVSECLRLSAVVATDRYLLAP 146
            A  GPFS LSLCV+  G V++NT+  F +GV  GGG +S R+T GDTTH+V DASLA SW+K+D+YFSGW   DDL+D    GR        P GVP+VS+EW+SECLR S VVATD Y L P
Sbjct:  268 AVSGPFSGLSLCVVHLGSVTNNTIKTFKRGVCDGGGHVSMRFTPGDTTHIVADASLAASWEKLDNYFSGWGGVDDLDDAVNGGRVGLKSGMMPEGVPIVSNEWLSECLRRSVVVATDAYRLIP 390
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10649.613.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JQ91_9PHAE4.920e-3860.66DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G2F7_ECTSI5.340e-3859.50DNA polymerase lambda n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JHQ3_9PHAE1.660e-3557.72DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 24..147
e-value: 3.3E-11
score: 45.1
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 23..137
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 27..144
score: 15.259

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10649contigL-elsbetiae_contig10649:3147..3593 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10649.613.1mRNA_L-elsbetiae_contig10649.613.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10649 3147..3594 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10649.613.1 ID=prot_L-elsbetiae_contig10649.613.1|Name=mRNA_L-elsbetiae_contig10649.613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
AADPIGGGGNTTGMRSKKKRKKAEDPAAPGPFSRLSLCVMKRGKVSSNTL
TVFAKGVRSGGGRLSDRYTHGDTTHVVVDASLARSWDKIDDYFSGWDDLE
DIDAAGRAAEARTGAPGGVPVVSSEWVSECLRLSAVVATDRYLLAPPPS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom