mRNA_L-elsbetiae_contig10649.613.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10649.613.1
Unique NamemRNA_L-elsbetiae_contig10649.613.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10649.613.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.920e-38
Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = 1 
Query:   79 AAPGPFSRLSLCVMKRGKVSSNTLTVFAKGVRSGGGRLSDRYTHGDTTHVVVDASLARSWDKIDDYFSGWDDLEDIDAAGRAAEARTGAPGGVPVVSSEWVSECLRLSAVVATDRYLLAPPP 444
            AA GPFS LSLCV++ G V++NT+    +  R GGG++S  YT GDTTH+V DASLA SW+K D YFSGWDD ED+   G A   R   P GVPVVSSEW+SECLR S VVA D Y L PPP
Sbjct:   56 AASGPFSGLSLCVVRLGSVTNNTVGTLPREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKFDLYFSGWDDFEDV-VDGAATAGRGRMPDGVPVVSSEWMSECLRRSEVVAADAYRLTPPP 176
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BLAST of mRNA_L-elsbetiae_contig10649.613.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 5.340e-38
Identity = 72/121 (59.50%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:   79 AAPGPFSRLSLCVMKRGKVSSNTLTVFAKGVRSGGGRLSDRYTHGDTTHVVVDASLARSWDKIDDYFSGWDDLEDIDAAGRAAEARTGAPGGVPVVSSEWVSECLRLSAVVATDRYLLAPP 441
            AA GPFS LSLCV+ +G V++NT+    +  R GGG++S  YT GDTTH+V DASLA SW+K+DDYFSGWDD ED+   G A   R   P GVPVVSSEW+SECLR S VV  + Y L PP
Sbjct:   56 AASGPFSGLSLCVVSQGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWEKLDDYFSGWDDFEDV-VDGAATAGRGRMPDGVPVVSSEWMSECLRRSEVVTAEAYRLTPP 175
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BLAST of mRNA_L-elsbetiae_contig10649.613.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.660e-35
Identity = 71/123 (57.72%), Postives = 86/123 (69.92%), Query Frame = 1 
Query:   79 AAPGPFSRLSLCVMKRGKVSSNTLTVFAKGVRSGGGRLSDRYTHGDTTHVVVDASLARSWDKIDDYFSGW---DDLEDIDAAGRAAEARTGAPGGVPVVSSEWVSECLRLSAVVATDRYLLAP 438
            A  GPFS LSLCV+  G V++NT+  F +GV  GGG +S R+T GDTTH+V DASLA SW+K+D+YFSGW   DDL+D    GR        P GVP+VS+EW+SECLR S VVATD Y L P
Sbjct:  268 AVSGPFSGLSLCVVHLGSVTNNTIKTFKRGVCDGGGHVSMRFTPGDTTHIVADASLAASWEKLDNYFSGWGGVDDLDDAVNGGRVGLKSGMMPEGVPIVSNEWLSECLRRSVVVATDAYRLIP 390
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10649.613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JQ91_9PHAE4.920e-3860.66DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G2F7_ECTSI5.340e-3859.50DNA polymerase lambda n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JHQ3_9PHAE1.660e-3557.72DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10649contigL-elsbetiae_contig10649:3147..3594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue9.9e-34
Seed eggNOG ortholog2880.D7G2F7
Preferred namePOLB
KEGG rclassRC00536
KEGG koko:K01834,ko:K02330,ko:K03512,ko:K10981
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230
KEGG ModuleM00001,M00002,M00003,M00296
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1796@1,KOG2534@2759
EC2.7.7.7,5.4.2.11
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147
Exons1
Model size448
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.9360607-CDS-L-elsbetiae_contig10649:3146..35931622815284.9360607-CDS-L-elsbetiae_contig10649:3146..3593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10649 3147..3593 +
1691682816.8728478-CDS-L-elsbetiae_contig10649:3146..35931691682816.8728478-CDS-L-elsbetiae_contig10649:3146..3593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10649 3147..3593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10649.613.1prot_L-elsbetiae_contig10649.613.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10649 3147..3593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10649.613.1

>prot_L-elsbetiae_contig10649.613.1 ID=prot_L-elsbetiae_contig10649.613.1|Name=mRNA_L-elsbetiae_contig10649.613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
AADPIGGGGNTTGMRSKKKRKKAEDPAAPGPFSRLSLCVMKRGKVSSNTL
TVFAKGVRSGGGRLSDRYTHGDTTHVVVDASLARSWDKIDDYFSGWDDLE
DIDAAGRAAEARTGAPGGVPVVSSEWVSECLRLSAVVATDRYLLAPPPS
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mRNA from alignment at L-elsbetiae_contig10649:3147..3594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10649.613.1 ID=mRNA_L-elsbetiae_contig10649.613.1|Name=mRNA_L-elsbetiae_contig10649.613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=448bp|location=Sequence derived from alignment at L-elsbetiae_contig10649:3147..3594+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGATCCTATCGGCGGCGGCGGCAATACCACCGGGATGCGGAGCAA
GAAGAAGCGGAAGAAAGCAGAAGATCCTGCGGCGCCGGGGCCGTTCTCTA
GGCTCTCTCTGTGCGTCATGAAGCGGGGCAAGGTGTCCAGCAACACGCTC
ACGGTGTTCGCGAAGGGGGTGCGAAGCGGAGGGGGTCGGCTGTCGGATCG
ATACACGCACGGCGACACGACCCACGTCGTGGTGGACGCCTCGCTGGCTC
GCTCCTGGGACAAGATCGACGACTACTTCAGCGGGTGGGACGACTTGGAG
GATATCGACGCCGCGGGCAGGGCGGCGGAAGCCAGGACCGGGGCGCCTGG
CGGGGTCCCCGTCGTCAGCAGCGAGTGGGTGAGCGAGTGCCTGAGGCTTT
CGGCGGTGGTTGCGACGGACAGGTACCTCTTGGCCCCGCCGCCGAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10649:3147..3594+

>mRNA_L-elsbetiae_contig10649.613.1 ID=mRNA_L-elsbetiae_contig10649.613.1|Name=mRNA_L-elsbetiae_contig10649.613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig10649:3147..3594+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGATCCTATCGGCGGCGGCGGCAATACCACCGGGATGCGGAGCAA
GAAGAAGCGGAAGAAAGCAGAAGATCCTGCGGCGCCGGGGCCGTTCTCTA
GGCTCTCTCTGTGCGTCATGAAGCGGGGCAAGGTGTCCAGCAACACGCTC
ACGGTGTTCGCGAAGGGGGTGCGAAGCGGAGGGGGTCGGCTGTCGGATCG
ATACACGCACGGCGACACGACCCACGTCGTGGTGGACGCCTCGCTGGCTC
GCTCCTGGGACAAGATCGACGACTACTTCAGCGGGTGGGACGACTTGGAG
GATATCGACGCCGCGGGCAGGGCGGCGGAAGCCAGGACCGGGGCGCCTGG
CGGGGTCCCCGTCGTCAGCAGCGAGTGGGTGAGCGAGTGCCTGAGGCTTT
CGGCGGTGGTTGCGACGGACAGGTACCTCTTGGCCCCGCCGCCGAGCGCC
GCCGATCCTATCGGCGGCGGCGGCAATACCACCGGGATGCGGAGCAAGAA
GAAGCGGAAGAAAGCAGAAGATCCTGCGGCGCCGGGGCCGTTCTCTAGGC
TCTCTCTGTGCGTCATGAAGCGGGGCAAGGTGTCCAGCAACACGCTCACG
GTGTTCGCGAAGGGGGTGCGAAGCGGAGGGGGTCGGCTGTCGGATCGATA
CACGCACGGCGACACGACCCACGTCGTGGTGGACGCCTCGCTGGCTCGCT
CCTGGGACAAGATCGACGACTACTTCAGCGGGTGGGACGACTTGGAGGAT
ATCGACGCCGCGGGCAGGGCGGCGGAAGCCAGGACCGGGGCGCCTGGCGG
GGTCCCCGTCGTCAGCAGCGAGTGGGTGAGCGAGTGCCTGAGGCTTTCGG
CGGTGGTTGCGACGGACAGGTACCTCTTGGCCCCGCCGCCGAGC
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