mRNA_L-elsbetiae_contig9888.18825.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9888.18825.1
Unique NamemRNA_L-elsbetiae_contig9888.18825.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Match: A0A6H5KUS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS8_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 2.370e-75
Identity = 127/164 (77.44%), Postives = 141/164 (85.98%), Query Frame = 3
Query:    3 IDFKIKTADLLGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERAVSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQWQDQAAIAGVPTLKLGKGDAPKSKLADCC 494
            IDFKIKT  L+G+K KLQIWDTAGQERFRNITSAYYRGSMGI+LVYDV D+KSFKNV NWMRQIELNA PDVN+TLVGNK DV E+ER VS EQG+ LAAEHG+ VRFFETSARSNVNVTEAFEGLATDVI RLQ QD+A++A V  LKLG+ +  K   +DCC
Sbjct:   46 IDFKIKTVFLMGKKAKLQIWDTAGQERFRNITSAYYRGSMGIMLVYDVTDLKSFKNVGNWMRQIELNAAPDVNVTLVGNKSDVAEEERVVSLEQGQRLAAEHGDHVRFFETSARSNVNVTEAFEGLATDVITRLQAQDEASLARVAPLKLGQEEPTKK--SDCC 207          
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Match: D7FME1_ECTSI (Rab8B, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME1_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 4.890e-71
Identity = 119/154 (77.27%), Postives = 134/154 (87.01%), Query Frame = 3
Query:   33 LGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERAVSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQWQDQAAIAGVPTLKLGKGDAPKSKLADCC 494
            +G+K KLQIWDTAGQERFRNITSAYYRGSMGI+LVYDV DVKSF+NV NWMRQIELNA PDVN+TLVGNK DV E ER VSFEQG+ LAAEHG+ VRFFETSARSNVNVTEAFEGLATDVI RLQ QD+A++A V  LKLG+ ++ +   +DCC
Sbjct:    1 MGKKAKLQIWDTAGQERFRNITSAYYRGSMGIMLVYDVTDVKSFRNVGNWMRQIELNAAPDVNVTLVGNKSDVAEAERVVSFEQGQRLAAEHGDHVRFFETSARSNVNVTEAFEGLATDVITRLQTQDEASLARVAPLKLGQEESTEK--SDCC 152          
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Match: A0A485LS68_9STRA (Aste57867_25075 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485LS68_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.200e-50
Identity = 100/168 (59.52%), Postives = 125/168 (74.40%), Query Frame = 3
Query:    3 IDFKIKTADLLGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERAVSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQW--QDQAAIAGVPTLKLGKGDAPKSKLAD--CC 494
            IDFK+KT ++ G++VKLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D  SF+NV NWMRQI+ +A+P+VN  L+GNKCDV+  ERAV+ EQG ALA E+G  V+FFETSA+SN+NV EAF  +A DV  RL     D++ +A    +KL   D   S+ A   CC
Sbjct:   46 IDFKVKTIEVDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILIGNKCDVDPSERAVTKEQGEALANEYG--VQFFETSAKSNLNVEEAFRSIAVDVQKRLAECESDRSDVANQTRIKL---DEQNSRAASEGCC 208          
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Match: A0A067CHF2_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHF2_SAPPC)

HSP 1 Score: 182 bits (461), Expect = 2.020e-49
Identity = 97/166 (58.43%), Postives = 122/166 (73.49%), Query Frame = 3
Query:    3 IDFKIKTADLLGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERAVSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQW--QDQAAIAGVPTLKLGKGDAPKSKLADCC 494
            IDFK+KT D+ G++VKLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D  SF+NV NWMRQI+ +A+P+VN  L+GNKCDV+  ER V+ +QG  LAAE+G  V+FFETSA+SN+NV EAF  +A DV  RL     D+  +A    +KL   D    + +D C
Sbjct:   45 IDFKVKTIDVDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILIGNKCDVDPSERVVTTQQGEELAAEYG--VQFFETSAKSNLNVEEAFRSIAVDVQKRLAECESDRLDVANERKIKL---DDHADRTSDGC 205          
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Match: Q019D2_OSTTA (Small GTPase superfamily, Rab type n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q019D2_OSTTA)

HSP 1 Score: 179 bits (453), Expect = 3.370e-48
Identity = 95/164 (57.93%), Postives = 120/164 (73.17%), Query Frame = 3
Query:    3 IDFKIKTADLLGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERAVSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQWQDQAAIAGVPTLKLGKGDAPKSKLADCC 494
            IDFKIKT +L G++VKLQIWDTAGQERFR IT+AYYRG+MGILLVYDV+D +SF+NV  WMR IE +A+ +VN  L+GNKCDV+ED+R +S  +G+ALA E G  + FFETSA+S+VNV +AF  +A D+ NRL         G P   +  GD   +K A CC
Sbjct:   56 IDFKIKTVELGGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVSDERSFENVRGWMRNIEQHASSNVNKILIGNKCDVKEDKRVISKARGQALADEFG--IPFFETSAKSSVNVNDAFMTIAGDIKNRLTGSKGL---GAPNA-INLGDRAATKRASCC 213          
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Match: A0A1J3ISU9_NOCCA (Ras-related protein RAB1BV (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ISU9_NOCCA)

HSP 1 Score: 175 bits (444), Expect = 9.190e-48
Identity = 94/155 (60.65%), Postives = 116/155 (74.84%), Query Frame = 3
Query:   36 GRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERAVSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQW--QDQAAIAGVPTLKLGKGDAPKSKLADCC 494
            G++VKLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D  SF+NV NWMRQI+ +A+P+VN  L+GNKCDV+  ERAV+ EQG ALAAE+G  V+FFETSA+SN+NV EAF  +A DV  RL     D+  +A    +KL +  A  S+   CC
Sbjct:    2 GKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDDHSFQNVRNWMRQIQQHASPNVNKILIGNKCDVDPSERAVTKEQGEALAAEYG--VQFFETSAKSNLNVEEAFRSIAVDVQKRLAECDSDRLDVANESRIKLDEQSARPSE--GCC 152          
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Match: W7U3B0_9STRA (Rab8-family small gtpase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3B0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.140e-47
Identity = 94/164 (57.32%), Postives = 117/164 (71.34%), Query Frame = 3
Query:    3 IDFKIKTADLLGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERAVSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQWQDQAAIAGVPTLKLGKGDAPKSKLADCC 494
            IDFKIK+  L  +K+KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D +SF NV NWMRQIE +A+  VN  L+GNKCDV+  +R VS EQGR LA E+  R++FFETSA+ NVNV EAF  +A D+  R+  +     +G   +K+G G  P     +CC
Sbjct:   51 IDFKIKSLPLEDKKLKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFANVKNWMRQIEQHASESVNKILIGNKCDVDPADRRVSLEQGRKLAEEY--RIKFFETSAKENVNVDEAFYTVARDIALRIDNEVDLTASG-KNVKIGPGVGPAGG-KECC 210          
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Match: C1MMC0_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MMC0_MICPC)

HSP 1 Score: 175 bits (444), Expect = 4.710e-47
Identity = 93/164 (56.71%), Postives = 117/164 (71.34%), Query Frame = 3
Query:    3 IDFKIKTADLLGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERAVSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQWQDQAAIAGVPTLKLGKGDAPKSKLADCC 494
            IDFKI+T +L G++VKLQIWDTAGQERFR IT+AYYRG+MGILL YDV D  SF NV NWMR IE +A+ +VN  LVGNKCD+E D+R +S  +G+ALA E G  + FFETSA++NV V +AF  +A D+ NRL+   + A  G   +KLG G       + CC
Sbjct:   46 IDFKIRTVELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLTYDVTDETSFNNVRNWMRNIEQHASENVNKILVGNKCDME-DKRVISHARGKALADEFG--IPFFETSAKANVKVEDAFFSIARDIKNRLKSDKENAGGG--GIKLGSGKGGSGSKSSCC 204          
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Match: A0A2I4E562_JUGRE (ras-related protein RABE1c-like n=5 Tax=Pentapetalae TaxID=1437201 RepID=A0A2I4E562_JUGRE)

HSP 1 Score: 174 bits (442), Expect = 1.300e-46
Identity = 91/169 (53.85%), Postives = 121/169 (71.60%), Query Frame = 3
Query:    3 IDFKIKTADLLGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERAVSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQWQDQAAIAGVPTLKLGKGD-----APKSKLADCC 494
            IDFKI+T +L G+++KLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D  SF N+ NW+R IE +A+ +VN  LVGNK D++E +RAV   +G+ALA E+G  ++FFETSA++N+NV E F  +A D+  RL   D  A   +PTLK+ K D        ++ + CC
Sbjct:   50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNMNVEEVFFSIARDIKRRLAETDSRA--ELPTLKINKADQTDGGGQAAQKSSCC 214          
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Match: A0A6A2YIZ8_HIBSY (Ras-related protein RABE1e n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YIZ8_HIBSY)

HSP 1 Score: 174 bits (441), Expect = 1.590e-46
Identity = 91/166 (54.82%), Postives = 121/166 (72.89%), Query Frame = 3
Query:    3 IDFKIKTADLLGRKVKLQIWDTAGQERFRNITSAYYRGSMGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERAVSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQWQDQAAIAGVPTLKLGKGD--APKSKLADCC 494
            IDFKI+T +L G++VKLQIWDTAGQERFR IT+AYYRG+MGILLVYDV D  SF N+ NW+R IE +A+ +VN  LVGNK D++E +RAV   QG+ALA E+G  ++FFETSA++N+NV E F  +A+D+  RL   D  A      +K+ K D  A  ++ ++CC
Sbjct:   50 IDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSQGQALADEYG--IKFFETSAKTNLNVEEVFFSIASDIKQRLTESDNKAEPAA--IKINKEDPGASSAQKSNCC 211          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9888.18825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUS8_9PHAE2.370e-7577.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FME1_ECTSI4.890e-7177.27Rab8B, RAB family GTPase n=1 Tax=Ectocarpus silicu... [more]
A0A485LS68_9STRA2.200e-5059.52Aste57867_25075 protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A067CHF2_SAPPC2.020e-4958.43Uncharacterized protein n=5 Tax=Saprolegniaceae Ta... [more]
Q019D2_OSTTA3.370e-4857.93Small GTPase superfamily, Rab type n=2 Tax=Ostreoc... [more]
A0A1J3ISU9_NOCCA9.190e-4860.65Ras-related protein RAB1BV (Fragment) n=1 Tax=Nocc... [more]
W7U3B0_9STRA2.140e-4757.32Rab8-family small gtpase n=2 Tax=Monodopsidaceae T... [more]
C1MMC0_MICPC4.710e-4756.71Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A2I4E562_JUGRE1.300e-4653.85ras-related protein RABE1c-like n=5 Tax=Pentapetal... [more]
A0A6A2YIZ8_HIBSY1.590e-4654.82Ras-related protein RABE1e n=2 Tax=Hibiscus syriac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9888contigL-elsbetiae_contig9888:914..7334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue8.9e-44
Seed eggNOG ortholog2880.D7FME1
KEGG koko:K07901
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0078@1,KOG0078@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Ec32 ortholog descriptionRab8B, RAB family GTPase
Ec32 orthologEc-05_001110.1
Exons4
Model size2210
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9888.18825.1prot_L-elsbetiae_contig9888.18825.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9888 2627..4257 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817048.5320318-UTR-L-elsbetiae_contig9888:913..26261622817048.5320318-UTR-L-elsbetiae_contig9888:913..2626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9888 914..2626 -
1691684008.3806274-UTR-L-elsbetiae_contig9888:913..26261691684008.3806274-UTR-L-elsbetiae_contig9888:913..2626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9888 914..2626 -
1622817048.5788054-UTR-L-elsbetiae_contig9888:4257..42741622817048.5788054-UTR-L-elsbetiae_contig9888:4257..4274Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9888 4258..4274 -
1691684008.4289253-UTR-L-elsbetiae_contig9888:4257..42741691684008.4289253-UTR-L-elsbetiae_contig9888:4257..4274Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9888 4258..4274 -
1622817048.5892909-UTR-L-elsbetiae_contig9888:7232..73341622817048.5892909-UTR-L-elsbetiae_contig9888:7232..7334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9888 7233..7334 -
1691684008.43973-UTR-L-elsbetiae_contig9888:7232..73341691684008.43973-UTR-L-elsbetiae_contig9888:7232..7334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9888 7233..7334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817048.5431178-CDS-L-elsbetiae_contig9888:2626..27231622817048.5431178-CDS-L-elsbetiae_contig9888:2626..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9888 2627..2723 -
1691684008.3954089-CDS-L-elsbetiae_contig9888:2626..27231691684008.3954089-CDS-L-elsbetiae_contig9888:2626..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9888 2627..2723 -
1622817048.555302-CDS-L-elsbetiae_contig9888:3401..35351622817048.555302-CDS-L-elsbetiae_contig9888:3401..3535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9888 3402..3535 -
1691684008.4082944-CDS-L-elsbetiae_contig9888:3401..35351691684008.4082944-CDS-L-elsbetiae_contig9888:3401..3535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9888 3402..3535 -
1622817048.5661073-CDS-L-elsbetiae_contig9888:4110..42571622817048.5661073-CDS-L-elsbetiae_contig9888:4110..4257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9888 4111..4257 -
1691684008.418541-CDS-L-elsbetiae_contig9888:4110..42571691684008.418541-CDS-L-elsbetiae_contig9888:4110..4257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9888 4111..4257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9888.18825.1

>prot_L-elsbetiae_contig9888.18825.1 ID=prot_L-elsbetiae_contig9888.18825.1|Name=mRNA_L-elsbetiae_contig9888.18825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MGILLVYDVADVKSFKNVTNWMRQIELNATPDVNITLVGNKCDVEEDERA
VSFEQGRALAAEHGERVRFFETSARSNVNVTEAFEGLATDVINRLQWQDQ
AAIAGVPTLKLGKGDAPKSKLADCC*
back to top

mRNA from alignment at L-elsbetiae_contig9888:914..7334-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9888.18825.1 ID=mRNA_L-elsbetiae_contig9888.18825.1|Name=mRNA_L-elsbetiae_contig9888.18825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6421bp|location=Sequence derived from alignment at L-elsbetiae_contig9888:914..7334- (Laminarionema elsbetiae ELsaHSoW15)
GGATTGACTTCAAGATCAAGACTGCAGACCTGTTGGGACGCAAGGTGAAG CTGCAAATATGGGACACCGCGGGACAGGAGCGATTTCGGAACATCACGTC TGGTGAGACTTTCCTGGACGAGGCACGTTCGCGTCAAAAAAATAAGAAAC ACCCACTGAATTTCTTGTGGGTATCCATCCATCCTTGAGAAAAATAAAAA ATAGAAGACAACCATACTGTCTTGTTGAGCCTGTTATTAGTAACAGGGGA GGTATCACTACACAAGTGCCCAGGACAGAAACAAACCACTCGATTACACC TCCATTTTTTTTACCACAAAAAAGGTATACGACTGGAGTTATGAAAAAAA AAAAAAAAAAAAAAAACACCCACCCTGTTAAGGCAGAACGGTGGATGGAG ACTCGACAAAAAAGGGGGTAAATATTAAATATTTAGTTGTAACATATCGC ATGCGTTTATTGATGTAAAAAAAAAAGAAAAAAACAACAAAACAAAATCC GGGGGGGTTGTTGATGGCGGCGGCGAGAGCGAGGACACACCCACTCTGAA GCCTCGAGGCAGGAGATTGCACGTGGGGCTTAATACGACCGATTGACGCA CACCGCCGGATCCGAGACACCGTCGAAGCTTGAAACACACACGTGAATAG CAGGAGCGTGCCAACAGCACACCTACAAAAAACAACCTACATACAGCTGT AGTAGCAGCGGGGACGTGCACTATGATTACGGCATGTATGGACAACTCTC GAGTACCACCGAAGGAATTGTCCGAAGAAAATATTTTTCCCCGTCCACGC GGAAGCGGCTTATTACACTATCCCGTTTTCAATAATTCCGCCGCCTTTTC GGCGTTTTCCCCTTCCCCCTTGAAGCTGCGGGAAGGGGTACCCATTGATC AGTATAGACCTTGCTCGAAGAATAATCGCATACCCCCGCTGAACATCACG GAGCCTCACTTGAAGTTTGTGTGGGCTTTCCAAAAATGCCGGCATGTTTT CACAGTCCAGCCAAAAAACAGAGGTGTTCCGAGGTTCTCGGCTCTTTTTT GTCATGTTTGCGGAGGGGTTTTAAACCACCCCTTGCGCGTGTGAACTGGG GAAGTATGCCAATTTTGCTGCTGGACCTTTCCTCTATCCCACACTCTCTG AAAACAGCCGGGCTACAATCGCGTCGAGTCCATTTTTTGATCGGTGCAAA AATCACGGTGGTAGGCTCCGGGGTGCAGTCTCAAATATCCACTCGATTGT CCGAAAAAATAACGGCTGACAACGTCGCTCGTGCGCACCAGAAATTCGAA AGCGTGGCTTATAGCTATCTGCTGCTGCTACCAAGGACATGCGGCGGCCT CTACACACCATGATCAGTAGGCACTCCCAGCATCTTCCGCCGTTCTTGCC TGTGAGGGGCGAGCTATCTGATCTCTTGAACACCAAGTTGGCAATTCGGT CTTGCTTTGACAGTCCTGTGGAATCAATGATTTTTATATCTTCGAGAGGA AAATCTCCGCCATCAAGACAGGCTAGCTAAGAACTAGGAGCGGAGCATTT CTCTGCAGAGAACTGCAAACTGTGGCAACGGAGTGGGTCGAGAGGTATAG CAGCCGGATGCTAAGGGCTGAACTGGAAAGGGTGCTTTTGGGACGGGGTC CGTGCAGTCGATTTTCGCATACCCCAAAAAGTGTGCATTCAAAAAATCAA TCAAACCGTGCTCGTCCCTTAGCCCCTGGATCCAAAGTGCACTGTGCCCC CCCCCCCTACCCGCCGCCTTAAGGAACCGGGTTCGGTAACGAGTGCGTGA AGGGCTATCCACTTGTTGTTTTGGCAAGCGTCCCTCCTTCCGCGGCAAAC GGGCGTTGCAGAGGCGGGTTGTTACAAGATCCCGTATATGACATAAGATA ACACACCCCCTGGACCGATTTCGAAAGCTCGATTACTCGACAGCGAGAAT AGTTTCAGTCCCGAAAAGGGCGGCGTTGGAAAGACCTCATCAAGAGCTGT CCGAAAACGTGTCGTTTGGCATTAGAATCACAACTCGTTGCGGAGTAATC GAGCTTTGAAAATCGGTCCGGGGGGTGTGTTATCTTGTGTCATATACGGT ATGCACCTACCTACCTACACGCGTGACGTTCGAGCTCAACAGAACCATGT ATCGGGGCACGGCAGCTTTGCAGCATTATTTTTCGGTAGTAGCTCGGATT GCCAGCCTCTGCCATACCTGACGGCCGTGGAAGCATTCCCAGAGTGTCCT CTAGACCAACACAAAACTGCCAAATTTCTGAACTCACACCCTTGTGTTGT TGTACCTGTTCCTGATGTGTCGCTTTGTCGACCCATTGTGGGTCCATTTC TATGTTTGCACATTTCGAAGTGTTTCTCTTTTTTTCTTCACATTCATTTC CAGTGCTTGATGGGCTCCTTGCCGCGAGGGCATTTTTCCAGAGTAATGAA CGGTGGCCACACAGAAGTATTATTTTCCCCGAGGCCCCCACTCCCCCCTT CCTTCTGCGGTGCTTGCCCCCCTTAAGATTTTTAATGGATGTATACTGTT GTAGACAGTCCCGTTGACAGTCCCCACTCCCCCCTTCCTTCTGCGGTGCT TGCCCCCCTTAAGATTTTTGTCGCGAGAAGGGTTCAGCCGTTCCCTTTCC CTCTTCGACGGCGAGGTCGAAGTTTTTATGGGAGGGTTAATTAAAATTAA GCCTGTGACAACAGGGCCGACCGCAGAGTGCGTTGGACAAGTACGGACGG CTGGAGGTACTGAGTAATTTAGCACGTTCCCCTTCGGGTATACCTTATGT GTAAATAAAAGTTAGCTTGTGACAACGCGGCCGACTGCAGAATGCGTTGG ACGAGTACGGACAGATGACGGTACCGAGTAGAGAAATCGGGTATACCTTA TATGAGTAAATCAGCCTGTGACAACGGGGCGGGGCCGACCGCAGAATGCG TTGGACGAGTACGGACAGATGAAGGTACCGAGTAGAGAAATCGGAGTGGT TTTTAAATGCGAGGACAACAACAACATAGTTTGTACACATCGTCTCTCCT TCCCATGCAGCGTACTACCGAGGGAGCATGGGCATCCTGCTGGTGTACGA TGTGGCCGACGTGAAGTCGTTTAAGAACGTAACCAACTGGATGCGGCAGA TAGAGCTGAACGCGACTCCGGACGTGAACATCACGCTTGTGGGGAACAAG TGCGACGTGGAAGAGGACGAACGCGTGAGAAGAGAAGATGTAGAGAGAGA GATATATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGATAGAGAGAGAGATAGAGAGAGAGATAGAGAGAGAGCAAATATGCA TTCCATGTATATCTCCTTTTTGAAACGATACATCTACTTCGTATATATGC ACTTCCCGACCCAGGGAAAATAAAATCAGCATTGCACATATGTCTCCGGG CGTCCAAAGTTCTTCTTTTTCAAGTATGCCACGTGGCTAGAGGCAGGCGT GGAGTGGCTACCGTAATCATGCGAAGGTTCGCACCCCCGTGTTAGCATTT TTCTAAAGCGTATTTCTCCACAACCAGGAGGGTGCGAACACTAACTGATA TCTCTGTGGAAGCCCCCGACGAGACGTTTCGAAAACCACCCTTTTCGGCA GTGGTACCCTCCTGGTTGTGGAGAAATACGCTATAGAAAAACGCTAACAC GGGGGTGCGACAACCCGCATGATTACGGTAAATCCCCGTCTCCTCCCCCC CCCCCCCCCCCTCCATTTTTCTGCTCTCTTGCTCCCTGGTGGTCGGAAGG CGGTTTCCTTCGAGCAGGGCCGGGCATTAGCGGCCGAGCACGGCGAGAGG GTACGTTTTTTCGAGACCAGCGCGCGGTCGAACGTGAACGTGACCGAAGC GTTCGAAGGCTTGGCCACCGACGTCATTAACAGGTCAGATATGTACGTAC ATCCGGGACGGCCCAGTGTGTTATGGCACAGCATGAACTTCTACCATAAT TTACTATACATGTGTGTGGGTGAGTGCGCGTGCTTTTTTTTGTTTCACGA CGACAAGTACTCCAGTTTGTTTTCTTTTCTAGTTTTTCCTTCTTTTCCTT TTTTATTTTTTATTTTTGGCAGGGAATGGAGGAGGAAGAAGGAGGTGAAG GGAGTCAATCGGCGAGCGAAGAGAGGCGGGAGGGGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTTCGTG TTTTTTCGTGCCCATCTCTTGAACGAGTGCATAGCCACGCTCTGCCGCTT CTGTGGTTGTTATTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGCTGTGTTGTTGTTGCCGTT GTTGTGGCTCCTTCCACACTTCCATGGGCTCATCGTATCAGGCCCTGCCG GTGGCCACGAAAGTGATCACAGTCCTCCTTGTATCATGTACAGCAAGCAA AACTTGGAAACGCAAAACCGTCAAAGTGGCATGTTTTTAAGAAATGCTGG AATGTGTGCTCTCGCCCTTCGTTACTTTCGGCTGAAAATCGGGACACAAC CAATTAACCAGGCTGCAATGGCAAGACCAGGCGGCAATCGCGGGGGTCCC GACATTGAAGCTTGGCAAGGGGGATGCTCCCAAGAGTAAGCTCGCGGACT GCTGCTGATGGGTGCAGATGACCGATCTTGGATTTTGGAGATCGGATGTT GGACTCCGTGCTGGAGCTATATGCTTGGTGTTACGCATTTTCCCACCCCG ATTGAGTTTTTTTTCTTCGTTTTTATTCCTCCGGGTTTTGTGTGTTTGAG AATTTCGAGTCACGGCAGAAGGCTCCAGAGCTGAGGTGAGGACTTCGCTG GTCGGCGTAGATTGTGCGCATGTAGTATCCGCGATGACGCACCCCTCGCG GAAGGGGGGTACCGGTGTAGGGTTGGCAGCCTGCCCTTCTTTCGACTCGC TGAACAGAGCACACTTCGCCGGCCGTTGCGGGTACCAAAAGGCACGAGAC CCAAAACCCGGCAGACGGCCGGGCCTCGCCCCTCACGCCTTCTCCAGGGA TACGAGGATCTGCCTATGGCTTTGAGACTACGTACGGCTGTGCACGGTTC TGGGTACATCATCCGTACACGCCCCTGGCACGATGCTAGCCGCGCTCGGA TTTTTCGTAAGAGAAAATCGAGGTGCCAAGGCGCAGAGGCCCCAAGCAGC GTGTACTGCTGTGTACATGCGATGGTGCTGAGGTTTGTGGGACAGGCGTT TTGAGATCTCCCACGTTAAAAGAGGCAAATTTGTCATCTCCCTTGTGGGA AAAGCGAGCGGCAGAGTTCAGACCGTGAAGGATAGCGATTTGCTTCGTAA CGTATCTTGGGGTCACCCTTTTTCTACGGTAACCTAGTGCAATATTCCAC CGGAGCGCTACAGTAGTAGACGGCGAGTTGTTTCCAGGCAGAAGCAATGG GCTGTGAAACTGGTACATACGGCGCTTGTCTCCGTACGACTCTTTGTTTT CGGTGGTTGATGTCGATCCCGAACGTGTTTCTTCACTCTTTTTTTGTCTG TTCGTCCGCAGATGCGGGCGAGCGTGTGGTGGATTGCTTTCGAGTGCACC AGATCCTTACGAAACGTGTTGTTTGCGTGTGCGGAGGTCGATTCCGGGGG GAAAGCAGATACGAAGTACTAAATACTGTAAGTCATGCTCGGTCATGCTG CAGATCCTTTGTACATATTGCGGTAGGTCACTGTTTGCTGAACATTAACA TGTTTTTGTCCACAACCTCACATTTTGGTGGAAGCGGTGTTGGGTGTACT CGATCATTGATGCAGTTATAAGGTCAAGGTCGGAACTCTAAAGTTTAAAG TATCTACAGCAGTACACACGTGCATGAGCCACGAAGATGATTGCGGACTC GCATGCAAAAATGAGTTGTCTTTTTCGAGAGAACATATTTTAATCAAAGT GGAACGCAACCCACATTAGAGACGGGACTCCGTGGGATTCAAACGGTATT CCATATACAGCGCAGGTCCCTGTTTTGGACCGTTTTTTTAAGGCCGGTTG CCCCGTTCAAGGCCGGTGACATCGCTTGGCACATAATTCGTCCCTGTTTA AGGCCTCCGTTGAGGCCCCAGCTCACTCAGATAAGGCCGGTTTGGTGATT TCTTGTGACAGGCATTCTCTTAATGTATCCACGCACAAAATGATAAGCAT AATGTTTTCGCGCCGCTGGCTTGGGCGTGGGTTAGTCTATGCCTCCTTCG GGTTCTTACGCTGCCAAATAAATGCACTCGATATCTTTTTGATTGATGCA TCAATTACTACGATAGTTTGATGGCGAAACTCGGGACTACTCTTCACACC CTGCGCAGCTCTCTCGACGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9888:914..7334-

>mRNA_L-elsbetiae_contig9888.18825.1 ID=mRNA_L-elsbetiae_contig9888.18825.1|Name=mRNA_L-elsbetiae_contig9888.18825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig9888:914..7334- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCATCCTGCTGGTGTACGATGTGGCCGACGTGAAGTCGTTTAAGAA
CGTAACCAACTGGATGCGGCAGATAGAGCTGAACGCGACTCCGGACGTGA
ACATCACGCTTGTGGGGAACAAGTGCGACGTGGAAGAGGACGAACGCATG
GGCATCCTGCTGGTGTACGATGTGGCCGACGTGAAGTCGTTTAAGAACGT
AACCAACTGGATGCGGCAGATAGAGCTGAACGCGACTCCGGACGTGAACA
TCACGCTTGTGGGGAACAAGTGCGACGTGGAAGAGGACGAACGCGCGGTT
TCCTTCGAGCAGGGCCGGGCATTAGCGGCCGAGCACGGCGAGAGGGTACG
TTTTTTCGAGACCAGCGCGCGGTCGAACGTGAACGTGACCGAAGCGTTCG
AAGGCTTGGCCACCGACGTCATTAACAGGCGGTTTCCTTCGAGCAGGGCC
GGGCATTAGCGGCCGAGCACGGCGAGAGGGTACGTTTTTTCGAGACCAGC
GCGCGGTCGAACGTGAACGTGACCGAAGCGTTCGAAGGCTTGGCCACCGA
CGTCATTAACAGGCTGCAATGGCAAGACCAGGCGGCAATCGCGGGGGTCC
CGACATTGAAGCTTGGCAAGGGGGATGCTCCCAAGAGTAAGCTCGCGGAC
TGCTGCTGAGCTGCAATGGCAAGACCAGGCGGCAATCGCGGGGGTCCCGA
CATTGAAGCTTGGCAAGGGGGATGCTCCCAAGAGTAAGCTCGCGGACTGC
TGCTGA
back to top