mRNA_L-elsbetiae_contig9864.18805.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9864.18805.1
Unique NamemRNA_L-elsbetiae_contig9864.18805.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9864.18805.1 vs. uniprot
Match: D7FZ11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ11_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 9.240e-140
Identity = 289/450 (64.22%), Postives = 330/450 (73.33%), Query Frame = 1 
Query:    1 QEHFEEMEGAMLAAAAQAHGRPKRSSKNVLKNG-LKVERGEEDXXXXXXXXXXXXXXXXXXLGPEGEGGSELNGLGPTRNMGRFAGELLMPLMKSIYSNADKLNRRQAAAVVAHLVRPGKAGGGFAKCLVSKLREHSPVKCLEVHMATLRVFYDKWVMSIAAAGDDAGDGDGDANLTDDEKMHKQWEQDQAGMDRWLPLARRLSMSLGVGPLRSRDPAEQKTLQDLFLGFMKVGVRFALDPEGDRLLFLEGMREYASKVTPRQKKVLGKAFDDEAKSLHDNVLEEGRDFAPVWDSGDTQASAERKGNGREKLCQQDVAPRWRAFFSFRNSLSPGSAASFIPDTNSNSAGSGYGSGADALSLSPPNSINGSSVGTRTPASVGRLVRMGGSAMATSSISGGSGGSAKRRGRVTGRTASARNLGRMSMASAASDLLPVAEE-GLFQVRALSGN 1344
            QEHFEEME  M+A+  +   +  RSSK    NG +KVE  +  XXXXXXXXXXXXXXXXXX   +  G    +G G T    + AG LLMPLMKSIYSNADKLNRRQAAAVVAHLVR GK G GFAKC VSKL++HSPVKCLEVHMATLRVFYDKWV++ AA G+   D   DA+L+DDEK  KQW+QD AGM+RWLPLARRLSMSLGVGPL+S+D AEQKTLQDLFLGFMKVGVRFALD EGDRLLFLEGMREY+SKVT RQKK L KAFDDEAK LHD VLEEGR+ A  WDSG+ Q               +DVAPRWRAFFSFR++L+ GSAASFIP+      G GY S  DA S+SP +S +GSS+GT  PAS G   R  GS ++++S +GG GGS KRRGRV GR + A    R S+AS   DL+PVAEE G+ Q   L  N
Sbjct:  457 QEHFEEMEEVMVASTLRGPRQQTRSSKT--NNGRVKVEHNDXXXXXXXXXXXXXXXXXXXXXXXDEVGVDTSSGGGDTV---KDAGLLLMPLMKSIYSNADKLNRRQAAAVVAHLVRSGKTGSGFAKCFVSKLKDHSPVKCLEVHMATLRVFYDKWVVAAAADGNVEED---DADLSDDEKTRKQWDQDLAGMERWLPLARRLSMSLGVGPLKSKDLAEQKTLQDLFLGFMKVGVRFALDAEGDRLLFLEGMREYSSKVTARQKKALAKAFDDEAKGLHDQVLEEGRENATSWDSGEGQ---------------EDVAPRWRAFFSFRSTLTAGSAASFIPE------GRGYASSGDASSVSPSHSASGSSMGT--PASRGTKRRAVGSGVSSTSSAGG-GGSVKRRGRVGGRVSMASVRSRRSVAS---DLMPVAEEDGMQQDEQLEDN 871
[Close]
BLAST of mRNA_L-elsbetiae_contig9864.18805.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 417 bits (1073), Expect = 1.150e-129
Identity = 286/452 (63.27%), Postives = 324/452 (71.68%), Query Frame = 1 
Query:    1 QEHFEEMEGAMLAAAAQAHGRPKRSSKNVLKNG-LKVERGEEDXXXXXXXXXXXXXXXXXXLGPEGEGGSELNGLGPTRNMGRFAGELLMPLMKSIYSNADKLNRRQAAAVVAHLVRPGKAGGGFAKCLVSKLREHSPVKCLEVHMATLRVFYDKWVMSIAAAGDDAGDGDGDANLTDDEKMHKQWEQDQAGMDRWLPLARRLSMSLGVGPLRSRDPAEQKTLQDLFLGFMKVGVRFALDPEGDRLLFLEGMREYASKVTPRQKKVLGKAFDDEAKSLHDNVLEEGRDFAPVWDSGDTQASAERKGNGREKLCQQDVAPRWRAFFSFRNSLSPGSAASFIPDTNSNSAGSGYGSGADALSLSPPNSINGSSVGTRTPASVGRLVRMGGSAMATSSISGGSGGSAKRRGRVTGRTA--SARNLGRMSMASAASDLLPVAEE-GLFQVRALSGN 1344
            QEHFEEME  M+A+  +   +  RSS+   KNG +KVE  +  XXXXXXXXXXXXXXXXXX        S   G G T    + AG LLMPLMKSIYSNADKLNRRQAAAVVAHLVR GK G GFAKC VSKL++HS VKCLEVHMATLRVFYDKWV++ AA G    D   DA+L+DDE   KQW+QD AGM+RWLPLARRLSMSLGVGPL+S+D AEQKTLQDLFLGFMKVGVRFALD EGDRLLFLEGMREY+SKVT RQKK L   FDDEAK LHD+VLEEGR+ A  WDSG+ Q               +DVAPRWRAFFSFR++L+ GSAASFIP+      G GY S  DA S+SP  S +GSS+GT  PAS G   + GGS ++++S SG  GG  KRRGRV GR +  SAR     S  S ASDL+PVAEE G+ Q   L  N
Sbjct:  938 QEHFEEMEEVMVASTLRGPRQQTRSSET--KNGRVKVEHNDXXXXXXXXXXXXXXXXXXXXXXXXXXXSS---GGGDTV---KDAGLLLMPLMKSIYSNADKLNRRQAAAVVAHLVRSGKTGSGFAKCFVSKLKDHSLVKCLEVHMATLRVFYDKWVVAAAADGSVEED---DADLSDDENTRKQWDQDLAGMERWLPLARRLSMSLGVGPLKSKDLAEQKTLQDLFLGFMKVGVRFALDAEGDRLLFLEGMREYSSKVTARQKKALANVFDDEAKGLHDHVLEEGRENATSWDSGEGQ---------------EDVAPRWRAFFSFRSTLTAGSAASFIPE------GRGYASSGDASSVSPSQSASGSSMGT--PASRGTERKAGGSGVSSTS-SGSGGGIVKRRGRVGGRVSMTSAR-----SRRSVASDLMPVAEEDGMQQDEQLEDN 1349
[Close]
BLAST of mRNA_L-elsbetiae_contig9864.18805.1 vs. uniprot
Match: A0A7R9Y845_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y845_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.040e-12
Identity = 60/178 (33.71%), Postives = 88/178 (49.44%), Query Frame = 1 
Query:  259 LLMPLMKSIYSNADKLNRRQAAAVVAHLVRPGKAGGGFAKCLVSKLREHSPVKCLEVHMATLRVFYDKWVMSIAAAGDDAGDGDGDANLTDDEKMHKQWEQDQAGMDRWLPLARRLSMSLG-VGPLRSRDPAEQKTLQDLFLGFMKVGVRFALDPEGDRLLFLEGMREYASKVTPRQK 789
            +L PLMK+   +A+ LNRRQAAA V H V  G       K   + LR+    K LEV MATLR++Y +WV         +  G+ D  L D   +             ++PLA RLS S+G VG +R+      +++Q   L F+K GV FA +   D+  F  G+  +  + + + K
Sbjct:   79 ILEPLMKASICHAEHLNRRQAAAAVGHFVHSGPDRAETVKEFSTILRKLDASKYLEVVMATLRLWYGRWV---------SNRGEEDEELPDPLVL-------------FVPLAERLSKSIGGVGLVRT------ESMQQPLLKFLKAGVAFAAEGVPDKCGFFAGLVPFVKRASKQIK 228
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9864.18805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZ11_ECTSI9.240e-14064.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7R4_9PHAE1.150e-12963.27SCD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9Y845_9STRA5.040e-1233.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9864contigL-elsbetiae_contig9864:639..7214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.5
Seed ortholog evalue1.9e-117
Seed eggNOG ortholog2880.D7FZ11
Preferred nameIRR1
KEGG koko:K06671
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5537@1,KOG2011@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons10
Model size1344
Cds size1326
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817046.7257385-UTR-L-elsbetiae_contig9864:638..6561622817046.7257385-UTR-L-elsbetiae_contig9864:638..656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9864 639..656 +
1691684006.9829342-UTR-L-elsbetiae_contig9864:638..6561691684006.9829342-UTR-L-elsbetiae_contig9864:638..656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9864 639..656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817046.7359335-CDS-L-elsbetiae_contig9864:656..8731622817046.7359335-CDS-L-elsbetiae_contig9864:656..873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 657..873 +
1691684006.9992008-CDS-L-elsbetiae_contig9864:656..8731691684006.9992008-CDS-L-elsbetiae_contig9864:656..873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 657..873 +
1622817046.7456365-CDS-L-elsbetiae_contig9864:1093..11601622817046.7456365-CDS-L-elsbetiae_contig9864:1093..1160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 1094..1160 +
1691684007.010373-CDS-L-elsbetiae_contig9864:1093..11601691684007.010373-CDS-L-elsbetiae_contig9864:1093..1160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 1094..1160 +
1622817046.7562482-CDS-L-elsbetiae_contig9864:1696..18101622817046.7562482-CDS-L-elsbetiae_contig9864:1696..1810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 1697..1810 +
1691684007.021222-CDS-L-elsbetiae_contig9864:1696..18101691684007.021222-CDS-L-elsbetiae_contig9864:1696..1810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 1697..1810 +
1622817046.7663317-CDS-L-elsbetiae_contig9864:2276..24021622817046.7663317-CDS-L-elsbetiae_contig9864:2276..2402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 2277..2402 +
1691684007.0323458-CDS-L-elsbetiae_contig9864:2276..24021691684007.0323458-CDS-L-elsbetiae_contig9864:2276..2402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 2277..2402 +
1622817046.7760358-CDS-L-elsbetiae_contig9864:2843..29941622817046.7760358-CDS-L-elsbetiae_contig9864:2843..2994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 2844..2994 +
1691684007.043167-CDS-L-elsbetiae_contig9864:2843..29941691684007.043167-CDS-L-elsbetiae_contig9864:2843..2994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 2844..2994 +
1622817046.7879138-CDS-L-elsbetiae_contig9864:3256..33821622817046.7879138-CDS-L-elsbetiae_contig9864:3256..3382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 3257..3382 +
1691684007.0583448-CDS-L-elsbetiae_contig9864:3256..33821691684007.0583448-CDS-L-elsbetiae_contig9864:3256..3382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 3257..3382 +
1622817046.802259-CDS-L-elsbetiae_contig9864:4427..45441622817046.802259-CDS-L-elsbetiae_contig9864:4427..4544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 4428..4544 +
1691684007.0727715-CDS-L-elsbetiae_contig9864:4427..45441691684007.0727715-CDS-L-elsbetiae_contig9864:4427..4544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 4428..4544 +
1622817046.8153572-CDS-L-elsbetiae_contig9864:5603..57151622817046.8153572-CDS-L-elsbetiae_contig9864:5603..5715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 5604..5715 +
1691684007.0841742-CDS-L-elsbetiae_contig9864:5603..57151691684007.0841742-CDS-L-elsbetiae_contig9864:5603..5715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 5604..5715 +
1622817046.8345256-CDS-L-elsbetiae_contig9864:6357..64571622817046.8345256-CDS-L-elsbetiae_contig9864:6357..6457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 6358..6457 +
1691684007.0952287-CDS-L-elsbetiae_contig9864:6357..64571691684007.0952287-CDS-L-elsbetiae_contig9864:6357..6457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 6358..6457 +
1622817046.846169-CDS-L-elsbetiae_contig9864:7018..72141622817046.846169-CDS-L-elsbetiae_contig9864:7018..7214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 7019..7214 +
1691684007.104331-CDS-L-elsbetiae_contig9864:7018..72141691684007.104331-CDS-L-elsbetiae_contig9864:7018..7214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9864 7019..7214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9864.18805.1prot_L-elsbetiae_contig9864.18805.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9864 657..7214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9864.18805.1

>prot_L-elsbetiae_contig9864.18805.1 ID=prot_L-elsbetiae_contig9864.18805.1|Name=mRNA_L-elsbetiae_contig9864.18805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=442bp
MEGAMLAAAAQAHGRPKRSSKNVLKNGLKVERGEEDEDSSDDSDPDLDAD
LDLELGPEGEGGSELNGLGPTRNMGRFAGELLMPLMKSIYSNADKLNRRQ
AAAVVAHLVRPGKAGGGFAKCLVSKLREHSPVKCLEVHMATLRVFYDKWV
MSIAAAGDDAGDGDGDANLTDDEKMHKQWEQDQAGMDRWLPLARRLSMSL
GVGPLRSRDPAEQKTLQDLFLGFMKVGVRFALDPEGDRLLFLEGMREYAS
KVTPRQKKVLGKAFDDEAKSLHDNVLEEGRDFAPVWDSGDTQASAERKGN
GREKLCQQDVAPRWRAFFSFRNSLSPGSAASFIPDTNSNSAGSGYGSGAD
ALSLSPPNSINGSSVGTRTPASVGRLVRMGGSAMATSSISGGSGGSAKRR
GRVTGRTASARNLGRMSMASAASDLLPVAEEGLFQVRALSGN
back to top

mRNA from alignment at L-elsbetiae_contig9864:639..7214+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9864.18805.1 ID=mRNA_L-elsbetiae_contig9864.18805.1|Name=mRNA_L-elsbetiae_contig9864.18805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6576bp|location=Sequence derived from alignment at L-elsbetiae_contig9864:639..7214+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAACACTTTGAGGAAATGGAAGGCGCAATGCTGGCTGCGGCTGCCCA
GGCGCACGGCCGGCCGAAGCGATCTTCGAAGAACGTTCTGAAGAACGGTC
TGAAGGTGGAGCGCGGAGAGGAAGACGAAGACTCCAGCGACGATAGCGAC
CCGGACCTCGATGCTGATCTCGACCTCGAGCTTGGCCCCGAAGGTGAAGG
CGGATCGGAGTTGAACGGGCTCGGACCGACGCGAAGTGGTGAAGCGGTCG
GCGGGAGCACCGAGGCATCATCTGCACTATAATACATACCAGTGGTGGCG
TTTTTGCGAGATCGTCCTTTTTGACGCCTCGTGTTCACCGGTGGCGGTCG
TGCTTGCTTAATTGGCACAGTTTTGTGTTTTGACCTCCCGCCCCGTTTTC
TTTATGCCCTGTCTGGTGGTTCACGCATGGGAAGGCGGCCTGCTGGCGAA
GGAAGACATGGGGCGGTTCGCGGGCGAGCTGCTCATGCCGCTGATGAAGA
GCATCTACAGCAACGCCGACAAGTACGTGTGTGCATATCATCAATTATGA
TCGTTTTGGATCAAAACATAAACATGCAATGGTAATAAATAACCAATGGA
ACCGTCGGTGCCCTTTCATATCCGATTTTTCTTTTTCTTTTGTTTTTTTG
TCAACCGGATCATGGCTGGGGCCCCAAGTAAAAAGCCATGAGCGACCAAA
GAGTTATGTGTTCGCGTTTGTGCACCACGTTTTGTAAGAGGCACGAACAC
GGACGGTGTTGCTTTTGAGGTCTCGTCCAGTTGAGGCTCCGCTGCTCTAG
TTTCGTTTCTTGTTCAGCAGCAGCAGCAGCAGCATACGACGCCGCCTCGG
AGCATGGTCGAGACGACGACGACGATGCGCGCTTATTGCGGCTCATCCTC
CCCCCTACAGCATTGTGCCCCTGTCGAGGCAATCTGCAGGCCCCCCTTGC
TGTCATTATTATGTCATATATCTATCCCTCTTCTTGTGTGCTCTGACTTC
GCCTGATTTATTGTATTTTCTTTGACCCCGCCCCCGCCCCCGCCCCCTCG
TCGCCTAGGCTGAACCGGAGGCAGGCAGCGGCAGTCGTGGCTCACCTAGT
GCGGCCTGGCAAGGCGGGCGGCGGGTTCGCCAAGTGTCTGGTGTCCAAGC
TGAGGGAGCACAGCCCCGTCAAGTAAGGGCGCAGACTGGGGGTGTCGCAG
ATTTATTCATGTATGATGATCGTGGATCGTGCAAAGATCATCGAGCTCCC
CCCGTTGACTCTGCCTACGGCAAAATGTCAAGAGTGTGGATGGGATGCCT
TGCTGTCCTGTAAATCTGACCCAGTCGATCGATGGGTCTTCTGTTTATTT
CCAGTTTTGGCGGCCTATCCCTGGCCCTGCTCTCTATCATGCCCTGCGTA
AATGGTATCTCTGGCGGCTACCTGAGAGGTAGAAACGTTTCTCCTCGACC
GCGCTTGCAGAAGTAGATAGCGTTTCTGCCTTCCTGCCCAATGGCTATAC
CCCAACTCCATGGACCCTCCCTGTCGATAAATGGCATCACTGCTGCCTAT
GGCGGTGCTCGCCTGCATCTGTGTATTATTTTTGCTGATGAACTTTTTAT
CACGTTGTATTGGCGCTGGCTGTTGACGCTCGTTGCAGGTGTCTCGAGGT
GCACATGGCGACGCTGAGGGTCTTCTACGACAAGTGGGTCATGTCGATCG
CGGCAGCGGGGGATGACGCCGGCGACGGAGATGGAGACGCCAACCTCACC
GATGACGAGAAGATGTACGTCGTTGTTCGTTGTTTGTTCTTGTTGGTTGC
TGTTGTTGCTGTTATTGCTGCTGCTGTTGTGGTGGTGGTGGTGGTGGTGG
TGATTGTTCAGTGCGAATGATGGAGTGTTGTATAGTTATTTCGAGGCGAC
CACTGTCTGTCAGACTCTCCCTTGCGACGACGGCTCATATGAATCAGCGC
GGTTTGAGCCAGGTGACGCTGTCGTAAGAGGCACACTGATGATGGCTAGA
AGCTATGTTACAGCCGCTGTGAGCGCCGCTCTCTGAGTTACTTTACGTAA
CCAGTCGCCTCCTTCGGCGACCAGAGGCATCAGAGCTCGTGCCCGCAACC
ACGGCGATGAACTCGTGCGCTGGTATTTACACGTTGGCCGCAAAACAAGG
CCCTCGTTTCACTTCACGAATTTCATCACATCACATCACACCACATCACC
AGCAGGCACAAGCAGTGGGAGCAAGACCAGGCGGGAATGGACCGCTGGCT
TCCCCTGGCCAGACGCCTGTCCATGTCTCTGGGGGTCGGCCCGCTCAGGA
GCAGGGACCCCGCCGAGCAGAAGACCCTCCAAGACCTCTTCCTCGGGTTC
ATGAAGGTGAAGTACTGTACCAGTATATAGTACTTGTAAATTGCCAACAG
CGTCGGCGACGACAACAACGGCGGCATCGAACCGCAAACGTTTCGGCGGC
GACCGACAAAATATGGTGGGGGTTGGGGGTGTGGGTGGGGGTGGGCGAAG
GATGGCCGGCCGTTTTTTTTCGTTTTCCGGCTCGTGGGGCTGGTTTTCTA
TCATATCGTGTCTGTGCTGCCTGCCTTCGCCTCGTGATTTTGCCGCCGTG
TTTTTCCCTCTCTCAAAGGTCGGCGTGCGGTTCGCCTTGGACCCGGAGGG
GGATCGGCTCTTGTTCCTCGAAGGCATGAGGGAGTACGCCAGCAAGGTAA
CCCCGCGCCAGAAGAAAGTTCTCGGGAAAGCCTTCGACGATGAGGTAAGA
AGGTGGCGTTAGAGGGAGACGGGCAGGTGTATTTGACAGGCAGGAGTGAA
GGCCCTTTGAGCCTGTCTGCTCTGAGCAAACGTGTGGTTTATGGGAGACC
TGGGGGTTACAAAACGACCCTCTGCCTGATAGCCGTCTGTCCGGCCGTGC
TATGTATGCATCCACGTCTTTTCTTTCTCTTGTTCTTGACATTTATTTCC
AGTGTTCGATGTGCTCCCTGCCACGAGGGCATCTTGCCAGAGTACTGAAC
CGTGGTCACTTAGACGGGATCCTTTCCGCGAGGCCCCCACTCCCCCCTTC
TGCGGTGCTTGCCTTAAGATTTTTGTCGCGGGAAGGGTTCAGTGGTCCTC
AATATACGTCCCGGCGTATGCGTGGTGGAACATTCCGTGCAAATATTTGT
TTTGCCTTGGCTTCTCCTGGCAGTTGCGGCATTGTTGCCATTTAGCCGCA
AGTTGTTGTTGTTTTCTTGGCATTAGCTCGTAGAATCGAGGTCGCTGTAA
CCCCAAAAAATCTGTCAACTCACGGCCCCGTGCGTGGTCACTAAAGTGCT
GGAGCCATCAAAGGGTCCTATAAGAAACACACGCAGGAAATGAAAGTGTG
TCTGTCTCGATGCCGACTATCAATGCTCTCTTGTGTGTTTTCTTGGTCTG
CCGGCCACCCATCACCCCGGCGTAAGCAGGCGTGCTTCATATGTAGGCAG
ACACGAAAGGTTCGCGCATGCCTCTGGTGCTTGTTGTCTCTCCATCTATA
TCTCTCCCGTCATGGCCGGGTAGGCGAAAGATGGAAACTGTTGTACGTAC
ACTTTCATCGTTTGTTGATCTTTTTGGCGAGGCTTAAAACGGCGTACAAA
AGAAAACACACAAACGGTGGTAGACATTTCGGTAGCAATGATTATGACAA
TGCTCTCTTTAATAAGCAAATACACTTGAAACATGCACAAATAAAGCGTG
AAAAAACAATGTTTTCGGCGCACGCCTTGGCCGTTTTTTACACGTACTTC
GTGCGTTGTTTGTGCCGTCCTCGTACCCTCCGAGCCAAGGCGAAGAGTCT
CCACGACAACGTTCTCGAGGAGGGGAGGGACTTTGCCCCGGTGTGGGACT
CAGGCGACACCCAGGCAAGCGCAGAGAGGAAGGGAAACGGAAGGGAAAAA
CTTTGCGTACACTTATTTACGCCGTTTTAAACGCGGCGCTTTTTTCCAAA
TTTTCAATTTTTTGGAATCACAAAAACACGGAACGGCCGGCGATTTGCTG
CGCGCCAGCGATTTATTTTTCCCCTAAAAATCTGAACCCTTGTGGGGTCC
GAAGCAGTTGAAACGGAAGCTTCCAAATTTTAACAACATTTCCCAAATTT
GAAATTTGAAATTTTGGAAGTTTTGACGGAAAAAGCCAGAAAAAGCGCTG
TGTTTCAACGGGCCTTAGGCGGGTGTGTGTGAAGCCTTCGGCTGACGCAA
GACTCCTCCGGGAGTCAGTCTGGTATCGCCAAGCGCGTACGTAGGCATCA
TCGTTTTGTTTTACTTTTCTTGAACGGCGTTGAGTGTGCCCTGTTTTGGT
GACCGCGGGCCCCCATGGATGCTTTTGGACTACTACTGTAGAGAGTTTAT
GTGAGAAACAACAACTTTTACGTGTGTACACTTACATACCACCCGGTAGA
TTTATATATCAAAGCCGCACATGGAGCGTAGCACAGAATCTGCCGTTGCC
GTTTTTTTCTTGTTGTTGAGTTATTGTAGAAGATGACACGCATGTTATGC
CAAGGCAGGGAAGCAGCTTGTGGTGTTCAGTAGCAAGCAATGCACGGCGG
TACTCGTTTCTTTCACCTCCTGCCGCGGTGCGAAGCTACGTGGATCTCAA
TTTTGTTCTGTTTTGTTGGTTTATGGTTTCGTCGCCTTATGTAGTCAATC
AAATTATACTCTAGAACACACGAGGAGTTCAGAAGACACATATTGTTCCA
CCGGTCTTGTAGTTTCAGGTGTAAGATGCAGTATGATAACCAGAAGTGCG
CACACAACGTACAGGAATAACGGGTTTGGTTGAGGCTTTGAACGGCCGCT
GTTTTTTTTTTTAAGTTCACGGCTCCTGCTCCGTTTTTAAACGCTTTGCT
TTCCCGCGTTTGGTGCGATATCGCTCTCCGCCCTGCCCCTTCTTGCGGTT
CCTGCGCTGTGCGTGCTCTCTTTCTGCTGTCTTCCTGTGGTCGGTCTACC
GCCGAGCAGCAGCAGCAGCAGGATGTCGCGCCCCGCTGGCGGGCTTTTTT
CTCCTTCCGCAACTCTCTTTCGCCCGGGTCTGCAGCGTCGTTCATCCCCG
ACACCAACAGCAACAGCGCTGGCAGCGGTAAGAATGAATGGGCAGGGGCA
TCGAATTTGGCCTAAAATTCCTCAATTTCATCTTCCGTGTTTGTTCTTTA
AAATAAAACAAAGAATCAAAGATGGAACCTAACCCATACTAGAGCAAATA
CTCAATATGGGGTTCGAACGGTATTCCATACAGAGACGTAATATTTGGCG
AAGCGAGCAGAAAAAACAACCTAAATATCAGAAGAATTCAACATCTCCCC
TGCAAAGATTTAGATTTGCGAGGTCGGCCAACAATTTTTCAGCGGGTAGA
GCCCACCGTGATGCCGTAATGTTGTCTTTTGCGCTGAGTGTGGCTATACG
TTGTACGCCCCCCCCCCCCTTTTTTTTCGATGGCACTTCTCTTTTCCTAA
CCTCGAACTCGCCCTCGGTCGCGGAGTGCCGTTCTCTGTTTCCCTCCCCG
CGTCTCCTAAAATATTGTCCGGGTTGCGATCATGTCATGGGGTCGTTTTT
GTACTTCGTTTTCGCCCGACCTGGATAACTTGTGTATTTTTTCAATATCC
ACGAACGTGAAATCCATGAATGGTATCCATGGTCGTTAACCTACCGCACC
ACCCCCTAACCCTAACCGTCAGCATGCCCCTGTCCCCCCCGTCCCCAACA
TTTGGATTTGTTGTGTCAGGGTACGGGTCTGGTGCGGACGCGTTGTCTCT
CTCTCCGCCCAACTCTATCAACGGGAGTTCTGTCGGCACGAGGACCCCTG
CAAGTGTGGGGAGGTTAGTGTTACTGCTGTTGGCCTTGAATGCCTTGTCG
ATGCAGGCAGTGCCTGTGATCATGCGATGAGATTGTGGTTTGCGAAGAAG
TACATGTTATGTAGGTGTACCTCTTCGGCCTTGTGTACCCTTGCCCGGTG
TATCTGCGTGTGTCGTTTTCGGGTCTTCTATTGGCTCCAGCACTTTTGTG
GCCACGGGCCGTGAGTTGCTAGAGTTTTGGAATTGGGAATCTCGGTTACA
CGAGCTAATGTGAATAAACATCAATAACAACAACAGCATGCGTGGGCTAG
GTTGTAACAACCCGTTGTAACCATAGGGGATTGAAATTCTAGCGTAGTCG
TGCATCACTCTTCGGTGTTCACTCTTCGATTTTCACTCTTGGTTTTGCTT
CGCTGCGGTACAGGTTTTAGGTATTCCGGATTCTGTTTTTTGCCTGCACG
ACCGCGGCGGTGTGTGTGCTTGCTTGTTTCGCCAACTTCTGGTTCCTAGC
TTGATCATTGTTCTGTCCGTCTGTCTGTCTCCCCTTCTCTCTCCCCCCCT
TGATGTTTTGTTCTTTGTGCCGTGCGGCAGGAGGATGGGCGGCAGTGCCA
TGGCTACATCGTCGATCTCCGGCGGCAGCGGCGGGTCTGCCAAGAGGCGT
GGAAGAGTCACTGGCAGGACGGCCAGCGCAAGGAACCTCGGCAGGATGAG
CATGGCCAGTGCCGCTAGCGATCTACTTCCGGTTGCAGAAGAGGGGCTCT
TTCAGGTAAGGGCTCTTTCAGGTAAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9864:639..7214+

>mRNA_L-elsbetiae_contig9864.18805.1 ID=mRNA_L-elsbetiae_contig9864.18805.1|Name=mRNA_L-elsbetiae_contig9864.18805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2652bp|location=Sequence derived from alignment at L-elsbetiae_contig9864:639..7214+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGGCGCAATGCTGGCTGCGGCTGCCCAGGCGCACGGCCGGCCGAA
GCGATCTTCGAAGAACGTTCTGAAGAACGGTCTGAAGGTGGAGCGCGGAG
AGGAAGACGAAGACTCCAGCGACGATAGCGACCCGGACCTCGATGCTGAT
CTCGACCTCGAGCTTGGCCCCGAAGGTGAAGGCGGATCGGAGTTGAACGG
GCTCGGACCGACGCGAAATGGAAGGCGCAATGCTGGCTGCGGCTGCCCAG
GCGCACGGCCGGCCGAAGCGATCTTCGAAGAACGTTCTGAAGAACGGTCT
GAAGGTGGAGCGCGGAGAGGAAGACGAAGACTCCAGCGACGATAGCGACC
CGGACCTCGATGCTGATCTCGACCTCGAGCTTGGCCCCGAAGGTGAAGGC
GGATCGGAGTTGAACGGGCTCGGACCGACGCGAAACATGGGGCGGTTCGC
GGGCGAGCTGCTCATGCCGCTGATGAAGAGCATCTACAGCAACGCCGACA
AACATGGGGCGGTTCGCGGGCGAGCTGCTCATGCCGCTGATGAAGAGCAT
CTACAGCAACGCCGACAAGCTGAACCGGAGGCAGGCAGCGGCAGTCGTGG
CTCACCTAGTGCGGCCTGGCAAGGCGGGCGGCGGGTTCGCCAAGTGTCTG
GTGTCCAAGCTGAGGGAGCACAGCCCCGTCAAGCTGAACCGGAGGCAGGC
AGCGGCAGTCGTGGCTCACCTAGTGCGGCCTGGCAAGGCGGGCGGCGGGT
TCGCCAAGTGTCTGGTGTCCAAGCTGAGGGAGCACAGCCCCGTCAAGTGT
CTCGAGGTGCACATGGCGACGCTGAGGGTCTTCTACGACAAGTGGGTCAT
GTCGATCGCGGCAGCGGGGGATGACGCCGGCGACGGAGATGGAGACGCCA
ACCTCACCGATGACGAGAAGATGTGTCTCGAGGTGCACATGGCGACGCTG
AGGGTCTTCTACGACAAGTGGGTCATGTCGATCGCGGCAGCGGGGGATGA
CGCCGGCGACGGAGATGGAGACGCCAACCTCACCGATGACGAGAAGATGC
ACAAGCAGTGGGAGCAAGACCAGGCGGGAATGGACCGCTGGCTTCCCCTG
GCCAGACGCCTGTCCATGTCTCTGGGGGTCGGCCCGCTCAGGAGCAGGGA
CCCCGCCGAGCAGAAGACCCTCCAAGACCTCTTCCTCGGGTTCATGAAGG
CACAAGCAGTGGGAGCAAGACCAGGCGGGAATGGACCGCTGGCTTCCCCT
GGCCAGACGCCTGTCCATGTCTCTGGGGGTCGGCCCGCTCAGGAGCAGGG
ACCCCGCCGAGCAGAAGACCCTCCAAGACCTCTTCCTCGGGTTCATGAAG
GTCGGCGTGCGGTTCGCCTTGGACCCGGAGGGGGATCGGCTCTTGTTCCT
CGAAGGCATGAGGGAGTACGCCAGCAAGGTAACCCCGCGCCAGAAGAAAG
TTCTCGGGAAAGCCTTCGACGATGAGGTCGGCGTGCGGTTCGCCTTGGAC
CCGGAGGGGGATCGGCTCTTGTTCCTCGAAGGCATGAGGGAGTACGCCAG
CAAGGTAACCCCGCGCCAGAAGAAAGTTCTCGGGAAAGCCTTCGACGATG
AGGCGAAGAGTCTCCACGACAACGTTCTCGAGGAGGGGAGGGACTTTGCC
CCGGTGTGGGACTCAGGCGACACCCAGGCAAGCGCAGAGAGGAAGGGAAA
CGGAAGGGAAAAACTTTGCGCGAAGAGTCTCCACGACAACGTTCTCGAGG
AGGGGAGGGACTTTGCCCCGGTGTGGGACTCAGGCGACACCCAGGCAAGC
GCAGAGAGGAAGGGAAACGGAAGGGAAAAACTTTGCCAGCAGGATGTCGC
GCCCCGCTGGCGGGCTTTTTTCTCCTTCCGCAACTCTCTTTCGCCCGGGT
CTGCAGCGTCGTTCATCCCCGACACCAACAGCAACAGCGCTGGCAGCGCA
GCAGGATGTCGCGCCCCGCTGGCGGGCTTTTTTCTCCTTCCGCAACTCTC
TTTCGCCCGGGTCTGCAGCGTCGTTCATCCCCGACACCAACAGCAACAGC
GCTGGCAGCGGGTACGGGTCTGGTGCGGACGCGTTGTCTCTCTCTCCGCC
CAACTCTATCAACGGGAGTTCTGTCGGCACGAGGACCCCTGCAAGTGTGG
GGAGGTTAGTGGTACGGGTCTGGTGCGGACGCGTTGTCTCTCTCTCCGCC
CAACTCTATCAACGGGAGTTCTGTCGGCACGAGGACCCCTGCAAGTGTGG
GGAGGTTAGTGAGGATGGGCGGCAGTGCCATGGCTACATCGTCGATCTCC
GGCGGCAGCGGCGGGTCTGCCAAGAGGCGTGGAAGAGTCACTGGCAGGAC
GGCCAGCGCAAGGAACCTCGGCAGGATGAGCATGGCCAGTGCCGCTAGCG
ATCTACTTCCGGTTGCAGAAGAGGGGCTCTTTCAGGTAAGGGCTCTTTCA
GGTAACGAGGATGGGCGGCAGTGCCATGGCTACATCGTCGATCTCCGGCG
GCAGCGGCGGGTCTGCCAAGAGGCGTGGAAGAGTCACTGGCAGGACGGCC
AGCGCAAGGAACCTCGGCAGGATGAGCATGGCCAGTGCCGCTAGCGATCT
ACTTCCGGTTGCAGAAGAGGGGCTCTTTCAGGTAAGGGCTCTTTCAGGTA
AC
back to top