mRNA_L-elsbetiae_contig980.18751.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig980.18751.1
Unique NamemRNA_L-elsbetiae_contig980.18751.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Match: D7FPR7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR7_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 6.690e-35
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    4 SGSDGERKKDGVEGSDNEVGEEADDMLTPAQRRFRQKQLEREVRKIRGMVKQTHRERIENFNALLASMTEHNDIPRCSAAGNG 252
            SGSD   KK+G    + + GEE DDMLTPAQRRFR+KQLERE +KIRGMV+QTHRERIENFNALLASMTEHNDIPRCSAAGNG
Sbjct:   95 SGSDDGAKKEGAGEGNEQAGEEVDDMLTPAQRRFRKKQLEREGKKIRGMVEQTHRERIENFNALLASMTEHNDIPRCSAAGNG 177          
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Match: A0A836CFW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.890e-18
Identity = 37/60 (61.67%), Postives = 51/60 (85.00%), Query Frame = 1
Query:   73 DDMLTPAQRRFRQKQLEREVRKIRGMVKQTHRERIENFNALLASMTEHNDIPRCSAAGNG 252
            D+ LTPAQ+R++Q++  ++ ++I+ +VK THR+RIE FN+ LASMTEHNDIPR SAAGNG
Sbjct:   71 DEFLTPAQKRYKQQKASQDEKRIKAIVKMTHRDRIEEFNSTLASMTEHNDIPRISAAGNG 130          
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Match: A0A835YYZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.230e-16
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   67 EADDMLTPAQRRFRQKQLEREVRKIRGMVKQTHRERIENFNALLASMTEHNDIPRCSAAGNG 252
            + D  LTPAQ+RF++ QL RE + +R +VK+THR+R+E FN  +A +TEHNDIPR SAAGNG
Sbjct:   69 DVDSGLTPAQKRFKEAQLARERQVMRELVKKTHRQRVEEFNQKIAKLTEHNDIPRISAAGNG 130          
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Match: A0A7R9VT13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VT13_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.680e-15
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   13 DGERKKDGVEGSDNEVGEEADDMLTPAQRRFRQKQLEREVRKIRGMVKQTHRERIENFNALLASMTEHNDIPRCSAAGNG 252
            D E K+  +  SD+E    +DD +T A+RR  + +LERE + +  + +Q+HRER+ENF+  L S+TEHNDIPR SAAGNG
Sbjct:   39 DEETKRTELPSSDHENAGSSDDDMTEAERRAMKVKLERERKDLEKIARQSHRERVENFSEKLGSLTEHNDIPRVSAAGNG 118          
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Match: A0A2R5GLX7_9STRA (Protein FAM32A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLX7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.370e-13
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   82 LTPAQRRFRQKQLEREVRKIRGMVKQTHRERIENFNALLASMTEHNDIPRCSAAGNG 252
            LTPAQRRF  KQ ERE  +I+ M + THRER++ FN  L+ ++EH+DIP+ SAAGNG
Sbjct:  307 LTPAQRRFELKQREREAERIKEMTRMTHRERVDAFNEKLSKLSEHHDIPKVSAAGNG 363          
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Match: A0A482S2J5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2J5_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 6.830e-13
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    4 SGSDGERKKDGVEGSDNEVGEEADDMLTPAQRRFRQKQLEREVRKIRGMVKQTHRERIENFNALLASMTEHNDIPRCSAAGNG 252
            SG   + +K  +E S +   + +D  LT AQRRF+++Q E+E +KI+    ++ R+R+E FN  L+ +TEHNDIPR SAAGNG
Sbjct:   35 SGESSKARKRTIEESADTDSKPSDAHLTEAQRRFKRRQQEKEEKKIKVEASKSFRDRVEEFNYKLSKLTEHNDIPRVSAAGNG 117          
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Match: W7TTM0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTM0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-12
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   67 EADDMLTPAQRRFRQKQLEREVRKIRGMVKQTHRERIENFNALLASMTEHNDIPRCSAAGNG 252
            E DD LT  QRR   K  ERE + I+ +V ++HRERI+ FN  L+ +TEHNDIPR SAAGNG
Sbjct:   59 EKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120          
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Match: A0A7S1D8Y5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8Y5_CYCTE)

HSP 1 Score: 67.4 bits (163), Expect = 1.240e-12
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   19 ERKKDGV--EGSDNEVGEEADD-MLTPAQRRFRQKQLEREVRKIRGMVKQTHRERIENFNALLASMTEHNDIPRCSAAGNG 252
            E K+DG   EG   E+  EADD  +T A+RR  + + +RE++++    +++HR+R+E FN  L+ +TEHNDIPR SAAGNG
Sbjct:   33 EAKRDGAVKEGKTTEIVAEADDDEMTDAERRALKFKEDRELQELEAAAQKSHRDRVEEFNEKLSKLTEHNDIPRVSAAGNG 113          
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Match: A0A7S2WV15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV15_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.340e-12
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   64 EEADDMLTPAQRRFRQKQLEREVRKIRGMVKQTHRERIENFNALLASMTEHNDIPRCSAAGNG 252
            E+ + +LT A++R R+K  ERE    R +  +THR+++E FN  L+S++EHNDIPR SAAGNG
Sbjct:   69 EDPEALLTEAEKRHRKKMRERETEMARSLTAKTHRQKVEEFNDRLSSLSEHNDIPRVSAAGNG 131          
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Match: H3HAY7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAY7_PHYRM)

HSP 1 Score: 67.4 bits (163), Expect = 1.900e-12
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   22 RKKDGVEGSDNEVGEEADDMLTPAQRRFRQKQLEREVRKIRGMVKQTHRERIENFNALLASMTEHNDIPRCSAAGNG 252
            R++D  +  + +V  E DD LTPAQRR  + Q +RE  +I  +  +T+RERIE  N  L S+TEH+D+PR SAAGNG
Sbjct:   56 RREDDTKQQNGDVELELDD-LTPAQRRHAEHQKKREQEEIEKVASKTYRERIEELNQYLGSLTEHHDVPRVSAAGNG 131          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig980.18751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR7_ECTSI6.690e-3579.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CFW3_9STRA6.890e-1861.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYZ7_9STRA2.230e-1659.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9VT13_9STRA2.680e-1550.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A2R5GLX7_9STRA6.370e-1359.65Protein FAM32A n=1 Tax=Hondaea fermentalgiana TaxI... [more]
A0A482S2J5_9ARCH6.830e-1345.78Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W7TTM0_9STRA1.040e-1258.06Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1D8Y5_CYCTE1.240e-1246.91Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2WV15_9STRA1.340e-1250.79Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
H3HAY7_PHYRM1.900e-1249.35Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig980contigL-elsbetiae_contig980:1144..1667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue3.7e-09
Seed eggNOG ortholog164328.Phyra93541
Preferred nameFAM32A
KEGG rclassRC00138
KEGG koko:K00213,ko:K12393,ko:K13120,ko:K17301
KEGG ReactionR01451,R01456,R07487,R07492
KEGG Pathwayko00100,ko01100,ko01110,ko04142,map00100,map01100,map01110,map04142
KEGG ModuleM00101
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0097159,GO:1901363
EggNOG free text desc.apoptotic process
EggNOG OGs3QG97@4776,KOG3410@1,KOG3410@2759
EC1.3.1.21
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04131,ko04147
Ec32 ortholog descriptionProtein of unknown function DUF1754, eukaryotic
Ec32 orthologEc-20_001090.1
Exons2
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817041.6070886-CDS-L-elsbetiae_contig980:1143..12781622817041.6070886-CDS-L-elsbetiae_contig980:1143..1278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 1144..1278 +
1691684003.16139-CDS-L-elsbetiae_contig980:1143..12781691684003.16139-CDS-L-elsbetiae_contig980:1143..1278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 1144..1278 +
1622817041.6174805-CDS-L-elsbetiae_contig980:1547..16671622817041.6174805-CDS-L-elsbetiae_contig980:1547..1667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 1548..1667 +
1691684003.178102-CDS-L-elsbetiae_contig980:1547..16671691684003.178102-CDS-L-elsbetiae_contig980:1547..1667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig980 1548..1667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig980.18751.1prot_L-elsbetiae_contig980.18751.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig980 1144..1667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig980.18751.1

>prot_L-elsbetiae_contig980.18751.1 ID=prot_L-elsbetiae_contig980.18751.1|Name=mRNA_L-elsbetiae_contig980.18751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MSGSDGERKKDGVEGSDNEVGEEADDMLTPAQRRFRQKQLEREVRKIRGM
VKQTHRERIENFNALLASMTEHNDIPRCSAAGNG*
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mRNA from alignment at L-elsbetiae_contig980:1144..1667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig980.18751.1 ID=mRNA_L-elsbetiae_contig980.18751.1|Name=mRNA_L-elsbetiae_contig980.18751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=524bp|location=Sequence derived from alignment at L-elsbetiae_contig980:1144..1667+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGGTTCAGATGGGGAAAGGAAGAAAGATGGGGTGGAAGGTAGTGA CAACGAAGTGGGCGAGGAAGCAGACGACATGCTGACTCCAGCCCAGCGGC GATTCAGGCAGAAGCAACTGGAGCGTGAGGTAAGAGTCTCGCTCGCGCCG CTCCGCTGTAACGCATTCCGAAGAACGTTGTTGGATCGCTCCACCTCGGA AGGTAACCATTGCCCCAACCGCCAGAAGCGCCCAGCTGACTGTGTAAATG ATGTTACGTGTTACGCCTCAGGACTAGCAACTGGCATGTTTTGTTTCTCA CGCTGCCTCCAATACACATTGCGACGGTATCACCTCGTCAGCGGCGCTTG GATACTCATTAGAACTTTCCGATTTCCCCATCGTTTTCGCAAACACAGGG GAAGAAAATTCGGGGCATGGTCAAACAGACTCACCGCGAACGAATTGAAA ACTTCAACGCCCTCCTTGCATCCATGACCGAGCACAACGACATTCCCAGA TGCTCGGCTGCAGGCAACGGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig980:1144..1667+

>mRNA_L-elsbetiae_contig980.18751.1 ID=mRNA_L-elsbetiae_contig980.18751.1|Name=mRNA_L-elsbetiae_contig980.18751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig980:1144..1667+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGGTTCAGATGGGGAAAGGAAGAAAGATGGGGTGGAAGGTAGTGA
CAACGAAGTGGGCGAGGAAGCAGACGACATGCTGACTCCAGCCCAGCGGC
GATTCAGGCAGAAGCAACTGGAGCGTGAGGTAAGAATGTCTGGTTCAGAT
GGGGAAAGGAAGAAAGATGGGGTGGAAGGTAGTGACAACGAAGTGGGCGA
GGAAGCAGACGACATGCTGACTCCAGCCCAGCGGCGATTCAGGCAGAAGC
AACTGGAGCGTGAGGTAAGAAAAATTCGGGGCATGGTCAAACAGACTCAC
CGCGAACGAATTGAAAACTTCAACGCCCTCCTTGCATCCATGACCGAGCA
CAACGACATTCCCAGATGCTCGGCTGCAGGCAACGGGTAGAAAATTCGGG
GCATGGTCAAACAGACTCACCGCGAACGAATTGAAAACTTCAACGCCCTC
CTTGCATCCATGACCGAGCACAACGACATTCCCAGATGCTCGGCTGCAGG
CAACGGGTAG
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