mRNA_L-elsbetiae_contig9733.18704.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9733.18704.1
Unique NamemRNA_L-elsbetiae_contig9733.18704.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Match: I2H7T7_TETBL (Uncharacterized protein n=1 Tax=Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7) TaxID=1071380 RepID=I2H7T7_TETBL)

HSP 1 Score: 60.1 bits (144), Expect = 1.470e-7
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 2 
Query:  212 NCDPNNPNVWCSLGVLYYQLHQNRDALDAYTRAIKLD 322
            N D  NP  WCS+GVLYYQ+ QN DALDAYTRAI+L+
Sbjct:  442 NRDSRNPIFWCSIGVLYYQIGQNHDALDAYTRAIRLN 478
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BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Match: A0A4P9Z1R2_9FUNG (Uncharacterized protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z1R2_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 4.560e-7
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:  227 NPNVWCSLGVLYYQLHQNRDALDAYTRAIKLD 322
            NP  WCS+GVLYYQ++Q RDALDAYTRAI+L+
Sbjct:  350 NPTYWCSIGVLYYQINQYRDALDAYTRAIRLN 381
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BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Match: A0A3M2SWT8_9EURO (Tetratricopeptide repeat protein n=1 Tax=Aspergillus sp. HF37 TaxID=1960876 RepID=A0A3M2SWT8_9EURO)

HSP 1 Score: 58.5 bits (140), Expect = 4.800e-7
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  218 DPNNPNVWCSLGVLYYQLHQNRDALDAYTRAIKLD 322
            D  NP  WCS+GVLYYQ++Q RDALDAY+RAI+L+
Sbjct:   20 DGRNPTFWCSIGVLYYQINQYRDALDAYSRAIRLN 54
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BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Match: H0ETI7_GLAL7 (Putative General transcriptional corepressor ssn6 n=1 Tax=Glarea lozoyensis (strain ATCC 74030 / MF5533) TaxID=1104152 RepID=H0ETI7_GLAL7)

HSP 1 Score: 58.5 bits (140), Expect = 4.940e-7
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  218 DPNNPNVWCSLGVLYYQLHQNRDALDAYTRAIKLD 322
            D  NP  WCS+GVLYYQ++Q RDALDAY+RAI+L+
Sbjct:   20 DGRNPTFWCSIGVLYYQINQYRDALDAYSRAIRLN 54
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BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Match: A0A4P9W4D1_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W4D1_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 5.010e-7
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  218 DPNNPNVWCSLGVLYYQLHQNRDALDAYTRAIKLD 322
            D  NP  WCS+GVLYYQ++Q RDALDAY+RAI+L+
Sbjct:    3 DGRNPTFWCSIGVLYYQINQYRDALDAYSRAIRLN 37
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BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Match: A0A137PI57_CONC2 (TPR-like protein (Fragment) n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PI57_CONC2)

HSP 1 Score: 58.2 bits (139), Expect = 6.180e-7
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  218 DPNNPNVWCSLGVLYYQLHQNRDALDAYTRAIKLD 322
            D  NP  WCS+GVLYYQ++Q RDALDAY+RAI+L+
Sbjct:  269 DGRNPTFWCSIGVLYYQINQFRDALDAYSRAIRLN 303
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BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Match: A0A060CBC2_9CYAN (CAZy families GT2|GT41 protein (Fragment) n=1 Tax=uncultured Cyanothece sp. TaxID=259951 RepID=A0A060CBC2_9CYAN)

HSP 1 Score: 55.8 bits (133), Expect = 6.950e-7
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  212 NCDPNNPNVWCSLGVLYYQLHQNRDALDAYTRAIKLD 322
            N D  NP   CS+GVLYYQ+ Q RDALDAYTRAI+L+
Sbjct:   99 NRDARNPTFXCSIGVLYYQISQYRDALDAYTRAIRLN 135
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BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Match: A0A4P6XMN8_9ASCO (Glucose repression mediator protein n=2 Tax=Metschnikowia TaxID=27320 RepID=A0A4P6XMN8_9ASCO)

HSP 1 Score: 57.4 bits (137), Expect = 1.310e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  212 NCDPNNPNVWCSLGVLYYQLHQNRDALDAYTRAIKLD 322
            N D  NP  WC +GVLYYQ+ Q RDALDAYTRAI+L+
Sbjct:  371 NRDLRNPTFWCLIGVLYYQISQYRDALDAYTRAIRLN 407
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BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Match: A0A0J9XF12_GEOCN (Uncharacterized protein n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XF12_GEOCN)

HSP 1 Score: 56.6 bits (135), Expect = 2.120e-6
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 2 
Query:  218 DPNNPNVWCSLGVLYYQLHQNRDALDAYTRAIKL 319
            D  NP  WCS+G+LY++++Q RDALDAYTRAI+L
Sbjct:  321 DSQNPRFWCSIGILYFRINQYRDALDAYTRAIRL 354
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BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Match: UPI001B8772DB (uncharacterized protein n=1 Tax=Suillus bovinus TaxID=48563 RepID=UPI001B8772DB)

HSP 1 Score: 55.5 bits (132), Expect = 2.420e-6
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  218 DPNNPNVWCSLGVLYYQLHQNRDALDAYTRAIKLD 322
            D  NP +WCS+GVLY+Q++Q RDALDAY+RAI ++
Sbjct:   16 DGRNPTLWCSIGVLYFQINQFRDALDAYSRAIHIN 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9733.18704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
I2H7T7_TETBL1.470e-770.27Uncharacterized protein n=1 Tax=Tetrapisispora bla... [more]
A0A4P9Z1R2_9FUNG4.560e-775.00Uncharacterized protein n=1 Tax=Syncephalis pseudo... [more]
A0A3M2SWT8_9EURO4.800e-768.57Tetratricopeptide repeat protein n=1 Tax=Aspergill... [more]
H0ETI7_GLAL74.940e-768.57Putative General transcriptional corepressor ssn6 ... [more]
A0A4P9W4D1_9FUNG5.010e-768.57Uncharacterized protein (Fragment) n=1 Tax=Blyttio... [more]
A0A137PI57_CONC26.180e-768.57TPR-like protein (Fragment) n=1 Tax=Conidiobolus c... [more]
A0A060CBC2_9CYAN6.950e-767.57CAZy families GT2|GT41 protein (Fragment) n=1 Tax=... [more]
A0A4P6XMN8_9ASCO1.310e-667.57Glucose repression mediator protein n=2 Tax=Metsch... [more]
A0A0J9XF12_GEOCN2.120e-664.71Uncharacterized protein n=1 Tax=Geotrichum candidu... [more]
UPI001B8772DB2.420e-662.86uncharacterized protein n=1 Tax=Suillus bovinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9733contigL-elsbetiae_contig9733:1700..2374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9733.18704.1prot_L-elsbetiae_contig9733.18704.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9733 1728..2270 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817037.2164638-UTR-L-elsbetiae_contig9733:1699..17271622817037.2164638-UTR-L-elsbetiae_contig9733:1699..1727Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9733 1700..1727 -
1691683999.8599253-UTR-L-elsbetiae_contig9733:1699..17271691683999.8599253-UTR-L-elsbetiae_contig9733:1699..1727Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9733 1700..1727 -
1622817037.2487445-UTR-L-elsbetiae_contig9733:2270..23741622817037.2487445-UTR-L-elsbetiae_contig9733:2270..2374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9733 2271..2374 -
1691683999.8896194-UTR-L-elsbetiae_contig9733:2270..23741691683999.8896194-UTR-L-elsbetiae_contig9733:2270..2374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9733 2271..2374 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817037.2269697-CDS-L-elsbetiae_contig9733:1727..18451622817037.2269697-CDS-L-elsbetiae_contig9733:1727..1845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9733 1728..1845 -
1691683999.8723683-CDS-L-elsbetiae_contig9733:1727..18451691683999.8723683-CDS-L-elsbetiae_contig9733:1727..1845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9733 1728..1845 -
1622817037.2371747-CDS-L-elsbetiae_contig9733:2037..22701622817037.2371747-CDS-L-elsbetiae_contig9733:2037..2270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9733 2038..2270 -
1691683999.881016-CDS-L-elsbetiae_contig9733:2037..22701691683999.881016-CDS-L-elsbetiae_contig9733:2037..2270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9733 2038..2270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9733.18704.1

>prot_L-elsbetiae_contig9733.18704.1 ID=prot_L-elsbetiae_contig9733.18704.1|Name=mRNA_L-elsbetiae_contig9733.18704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MLLYGRSADSVGVPPPSLFRSASAHVPVRVVPVSAATAIRTTRTSGVRWE
SSTTSSTRTGTRWTRTRGRSNSTPISARCGTTSARCTTAATRPRTPWTRT
RRRRNSAQAGVSSTSG*
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mRNA from alignment at L-elsbetiae_contig9733:1700..2374-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9733.18704.1 ID=mRNA_L-elsbetiae_contig9733.18704.1|Name=mRNA_L-elsbetiae_contig9733.18704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=675bp|location=Sequence derived from alignment at L-elsbetiae_contig9733:1700..2374- (Laminarionema elsbetiae ELsaHSoW15)
CGTGTTCCACGTAGTGCCCGCGACGATACCAGCAGTCGAGCACCACCGCG
TGTCGACGTGGTCCTACCGGCGCAAGTGGATGCACTGATGCAGCCCCTCT
CCTCATGCTTCTCTACGGCCGAAGCGCTGACTCTGTAGGCGTGCCCCCAC
CCTCCCTTTTTCGGTCCGCCTCTGCCCATGTCCCTGTTCGGGTGGTCCCT
GTTTCTGCAGCAACTGCGATCCGAACAACCCGAACGTCTGGTGTTCGTTG
GGAGTCCTCTACTACCAGCTCCACCAGAACCGGGACGCGTTGGACGCGTA
CACGAGGGCGATCAAACTCGACCCCCATCTCTGCGAGGTAAGCCCCCCCC
CCCCTCCCGCCGCTCCGTGCAAGAGGTGAAATAAAAACGGGAGTACATAA
ATAGATAAGAGAAAATAACTGTCCTCCTCCCCTCTTTCCGTCTCGAAAGG
AATGCCAGTTCAAGAGTCCAGTAGCTTCAGACAAAGCAGTGAGTGAGCAC
AAGTCCTCCTCCTCCTCCTCCTCCTCCAGGTGTGGTACAACGTCGGCACG
CTGTACGACAGCTGCAACCAGACCACGGACGCCCTGGACGCGTACAAGAA
GGCGGCGGAACTCGGCGCAAGCGGGGGTTTCATCCACGAGCGGATAACGG
CCCTCATGAAGAAGATGAGTATCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9733:1700..2374-

>mRNA_L-elsbetiae_contig9733.18704.1 ID=mRNA_L-elsbetiae_contig9733.18704.1|Name=mRNA_L-elsbetiae_contig9733.18704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig9733:1700..2374- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCTCTACGGCCGAAGCGCTGACTCTGTAGGCGTGCCCCCACCCTC
CCTTTTTCGGTCCGCCTCTGCCCATGTCCCTGTTCGGGTGGTCCCTGTTT
CTGCAGCAACTGCGATCCGAACAACCCGAACGTCTGGTGTTCGTTGGGAG
TCCTCTACTACCAGCTCCACCAGAACCGGGACGCGTTGGACGCGTACACG
AGGGCGATCAAACTCGACCCCCATCTCTGCGAGATGCTTCTCTACGGCCG
AAGCGCTGACTCTGTAGGCGTGCCCCCACCCTCCCTTTTTCGGTCCGCCT
CTGCCCATGTCCCTGTTCGGGTGGTCCCTGTTTCTGCAGCAACTGCGATC
CGAACAACCCGAACGTCTGGTGTTCGTTGGGAGTCCTCTACTACCAGCTC
CACCAGAACCGGGACGCGTTGGACGCGTACACGAGGGCGATCAAACTCGA
CCCCCATCTCTGCGAGGTGTGGTACAACGTCGGCACGCTGTACGACAGCT
GCAACCAGACCACGGACGCCCTGGACGCGTACAAGAAGGCGGCGGAACTC
GGCGCAAGCGGGGGTTTCATCCACGAGCGGATAAGTGTGGTACAACGTCG
GCACGCTGTACGACAGCTGCAACCAGACCACGGACGCCCTGGACGCGTAC
AAGAAGGCGGCGGAACTCGGCGCAAGCGGGGGTTTCATCCACGAGCGGAT
AA
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