mRNA_L-elsbetiae_contig9723.18694.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9723.18694.1
Unique NamemRNA_L-elsbetiae_contig9723.18694.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9723.18694.1 vs. uniprot
Match: A0A813I3N5_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I3N5_POLGL)

HSP 1 Score: 50.1 bits (118), Expect = 1.280e-5
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:   31 AFLNEIGCTVVALAGCIPRGVLVFLPSYRILGEAVRVWRASGVS 162
            AFL ++G T+V L GC+P GVL FLPSY  +  AV  W+    S
Sbjct:  379 AFLEDLGDTLVTLLGCMPGGVLCFLPSYAAIDAAVAAWKRQEAS 422
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BLAST of mRNA_L-elsbetiae_contig9723.18694.1 vs. uniprot
Match: A0A813DPK9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DPK9_POLGL)

HSP 1 Score: 50.1 bits (118), Expect = 1.280e-5
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:   31 AFLNEIGCTVVALAGCIPRGVLVFLPSYRILGEAVRVWRASGVS 162
            AFL ++G T+V L GC+P GVL FLPSY  +  AV  W+    S
Sbjct:  730 AFLEDLGDTLVTLLGCMPGGVLCFLPSYAAIDAAVAAWKRQEAS 773
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BLAST of mRNA_L-elsbetiae_contig9723.18694.1 vs. uniprot
Match: A0A813DB55_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DB55_POLGL)

HSP 1 Score: 50.1 bits (118), Expect = 1.280e-5
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:   31 AFLNEIGCTVVALAGCIPRGVLVFLPSYRILGEAVRVWRASGVS 162
            AFL ++G T+V L GC+P GVL FLPSY  +  AV  W+    S
Sbjct: 1043 AFLEDLGDTLVTLLGCMPGGVLCFLPSYAAIDAAVAAWKRQEAS 1086
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BLAST of mRNA_L-elsbetiae_contig9723.18694.1 vs. uniprot
Match: A0A4S4M7J8_9AGAM (ATP-dependent DNA helicase CHL1 n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4M7J8_9AGAM)

HSP 1 Score: 48.9 bits (115), Expect = 3.260e-5
Identity = 19/48 (39.58%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   16 NMRDDAFLNEIGCTVVALAGCIPRGVLVFLPSYRILGEAVRVWRASGV 159
            N+ + + + E+G  ++ LA  +P G++VFLPSYR+L +A+ VW+  G+
Sbjct:  542 NLSNQSLIIELGQLLLNLARLVPGGMVVFLPSYRVLNQALSVWKEGGL 589
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BLAST of mRNA_L-elsbetiae_contig9723.18694.1 vs. uniprot
Match: A0A1Y2G4S4_9BASI (ATP-dependent DNA helicase CHL1 n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2G4S4_9BASI)

HSP 1 Score: 47.8 bits (112), Expect = 8.400e-5
Identity = 18/46 (39.13%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   22 RDDAFLNEIGCTVVALAGCIPRGVLVFLPSYRILGEAVRVWRASGV 159
            +D+  L+E+G ++V +A  +P+G++VF+PSY  L +    W ASG+
Sbjct:  674 KDEKLLDELGQSIVNIAQVVPKGIVVFVPSYDFLNQVQARWEASGM 719
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BLAST of mRNA_L-elsbetiae_contig9723.18694.1 vs. uniprot
Match: A0A316UHP8_9BASI (ATP-dependent DNA helicase CHL1 n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316UHP8_9BASI)

HSP 1 Score: 47.8 bits (112), Expect = 8.400e-5
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   25 DDAFLNEIGCTVVALAGCIPRGVLVFLPSYRILGEAVRVWRASG 156
            D A L+++G  +   A  IP GV+VFLPSY++L E V  W+ +G
Sbjct:  698 DTALLDDLGNAIANFAALIPHGVVVFLPSYKLLDELVARWKETG 741
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9723.18694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A813I3N5_POLGL1.280e-550.00Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A813DPK9_POLGL1.280e-550.00Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813DB55_POLGL1.280e-550.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A4S4M7J8_9AGAM3.260e-539.58ATP-dependent DNA helicase CHL1 n=1 Tax=Bondarzewi... [more]
A0A1Y2G4S4_9BASI8.400e-539.13ATP-dependent DNA helicase CHL1 n=1 Tax=Leucospori... [more]
A0A316UHP8_9BASI8.400e-545.45ATP-dependent DNA helicase CHL1 n=1 Tax=Pseudomicr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9723contigL-elsbetiae_contig9723:148..312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size147
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817036.462158-UTR-L-elsbetiae_contig9723:147..1651622817036.462158-UTR-L-elsbetiae_contig9723:147..165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9723 148..165 +
1691683999.2413352-UTR-L-elsbetiae_contig9723:147..1651691683999.2413352-UTR-L-elsbetiae_contig9723:147..165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9723 148..165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817036.4726968-CDS-L-elsbetiae_contig9723:165..3121622817036.4726968-CDS-L-elsbetiae_contig9723:165..312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9723 166..312 +
1691683999.253697-CDS-L-elsbetiae_contig9723:165..3121691683999.253697-CDS-L-elsbetiae_contig9723:165..312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9723 166..312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9723.18694.1prot_L-elsbetiae_contig9723.18694.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9723 166..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9723.18694.1

>prot_L-elsbetiae_contig9723.18694.1 ID=prot_L-elsbetiae_contig9723.18694.1|Name=mRNA_L-elsbetiae_contig9723.18694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=49bp
MRDDAFLNEIGCTVVALAGCIPRGVLVFLPSYRILGEAVRVWRASGVS*
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mRNA from alignment at L-elsbetiae_contig9723:148..312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9723.18694.1 ID=mRNA_L-elsbetiae_contig9723.18694.1|Name=mRNA_L-elsbetiae_contig9723.18694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig9723:148..312+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGCGTTACGCTCAACATGAGGGACGACGCGTTCTTGAACGAGATCGG
GTGCACGGTTGTGGCCCTCGCCGGCTGCATACCCCGCGGAGTCCTCGTGT
TTCTGCCATCGTACCGGATACTTGGCGAGGCCGTGCGGGTCTGGCGTGCT
AGCGGGGTAAGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9723:148..312+

>mRNA_L-elsbetiae_contig9723.18694.1 ID=mRNA_L-elsbetiae_contig9723.18694.1|Name=mRNA_L-elsbetiae_contig9723.18694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=294bp|location=Sequence derived from alignment at L-elsbetiae_contig9723:148..312+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGACGACGCGTTCTTGAACGAGATCGGGTGCACGGTTGTGGCCCT
CGCCGGCTGCATACCCCGCGGAGTCCTCGTGTTTCTGCCATCGTACCGGA
TACTTGGCGAGGCCGTGCGGGTCTGGCGTGCTAGCGGGGTAAGTTGAATG
AGGGACGACGCGTTCTTGAACGAGATCGGGTGCACGGTTGTGGCCCTCGC
CGGCTGCATACCCCGCGGAGTCCTCGTGTTTCTGCCATCGTACCGGATAC
TTGGCGAGGCCGTGCGGGTCTGGCGTGCTAGCGGGGTAAGTTGA
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