Homology
BLAST of mRNA_L-elsbetiae_contig9708.18680.1 vs. uniprot
Match:
D7FWJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWJ1_ECTSI)
HSP 1 Score: 70.9 bits (172), Expect = 2.600e-12
Identity = 54/84 (64.29%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 31 NGDV--SASSATAIPPPAYKHKQPPTSAPGDRPDPAPSAASLADSSYXXXXXXXXXXXSSSSIMLNSTATVMSEAVLSTAVRDG 276
NGDV S S +PPPAYK PP SA RPDPAPSAASLADSSY S SS MLNSTATVMSEAVLSTAV +G
Sbjct: 272 NGDVPGSTGSTAGVPPPAYK---PPMSA---RPDPAPSAASLADSSYQYPDPSPAN--SPSSAMLNSTATVMSEAVLSTAVGEG 347
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9708.18680.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.60e-12 / Id = 64.29 Sequence D7FWJ1_ECTSI
Match Name E-value Identity Description
D7FWJ1_ECTSI 2.600e-12 64.29 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 73.9
Seed ortholog evalue 4.1e-11
Seed eggNOG ortholog 2880.D7FWJ1
Hectar predicted targeting category other localisation
EggNOG free text desc. response to abiotic stimulus
EggNOG OGs COG0666@1,KOG4177@2759
COG Functional cat. G
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
Exons 2
Model size 277
Cds size 267
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817035.1082706-UTR-L-elsbetiae_contig9708:84..93 1622817035.1082706-UTR-L-elsbetiae_contig9708:84..93 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig9708 85..93 +
1691683998.304257-UTR-L-elsbetiae_contig9708:84..93 1691683998.304257-UTR-L-elsbetiae_contig9708:84..93 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig9708 85..93 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817035.1194823-CDS-L-elsbetiae_contig9708:93..168 1622817035.1194823-CDS-L-elsbetiae_contig9708:93..168 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig9708 94..168 +
1691683998.3147287-CDS-L-elsbetiae_contig9708:93..168 1691683998.3147287-CDS-L-elsbetiae_contig9708:93..168 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig9708 94..168 +
1622817035.1309052-CDS-L-elsbetiae_contig9708:1114..1306 1622817035.1309052-CDS-L-elsbetiae_contig9708:1114..1306 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig9708 1115..1306 +
1691683998.3232312-CDS-L-elsbetiae_contig9708:1114..1306 1691683998.3232312-CDS-L-elsbetiae_contig9708:1114..1306 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig9708 1115..1306 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9708.18680.1
>prot_L-elsbetiae_contig9708.18680.1 ID=prot_L-elsbetiae_contig9708.18680.1|Name=mRNA_L-elsbetiae_contig9708.18680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MAGGSGYNGDVSASSATAIPPPAYKHKQPPTSAPGDRPDPAPSAASLADS SYQYPDPSPANSPSSSSIMLNSTATVMSEAVLSTAVRDG back to top mRNA from alignment at L-elsbetiae_contig9708:85..1306+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9708.18680.1 ID=mRNA_L-elsbetiae_contig9708.18680.1|Name=mRNA_L-elsbetiae_contig9708.18680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1222bp|location=Sequence derived from alignment at L-elsbetiae_contig9708:85..1306+ (Laminarionema elsbetiae ELsaHSoW15)AATGGAGTC ATGGCCGGCGGGTCGGGCTACAACGGGGATGTGTCGGCGTC
GAGCGCGACAGCCATTCCCCCTCCCGCGTACAAG GTGAGAGCGCGTCGGC
GGAGACGGAGAGTGGGTGGGGTGTGACAGAGAGAGCGGTCGGGGGGGGGG
GGGGGGGGTATATGCTGGTTTCCTGTGTCGCGGTCTTTATTGCCCCCGCT
CGCTTTGTTGTGCTGAATCTTTTCTCAAGACGCCAGAGCGGGAAGGCAGG
AGGCCCTACAGTCGGTATTGTGGAACGTGTGGGGTGTGTTCTCGTGGTAT
TTCTCGGGTGGGGCTGTGGTCGAGAGCGACACCCCAGAAATAACTGAGGT
CTGCGTTTACAGCTGACTCTGTTGTTCTATGTATGCAGTCCGTAAGAAGC
TCTTGGCGGCGTCGCACCCGGGCAACAACAGCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCGGTTTTTAATATTGGAGGAGGGGGGGGGGTCGATGAAGG
GGCCAGAGGCGGACCAACACTTTTNNNNNNNNNNTTTTTTTTTTCATTCC
GTAAATGGCCCTTGGGGGCGTCCCCCCCGGGAAACAACACCCCCCCCCCC
CCCCCGCTCTGAACGTCCGTGTTTGTTAGATATGAGAAGGGTACACTTGC
GTCAAAGGTGGCCAAGGCCAAGACCTCATTTATTTGCGGGGACGTCCGTG
ACTGCAGCCGAAAGACATCTCTAGGAGCGCGCGTGCATGATAGATACGTA
GTGTTGCCCCCGTTCTCGAAGGATGTTTCCGATGTATGTATTTATTTGCC
TCAAGGGTAAATGGTGCCTGCACCGCTGCTGATGTCCCCCCTCCCTCCCT
GCAGCGGCCCCACAGACCGCAACAACAGGCCGGCCTACACCCTGTTCACC
CCCCCCTGGCCCTCACACCGCCCCGTCCGCCCATCCATCCGCTGTGTGCT
TGCTAAATATGTATGCATGTATGTATGGGTATGGGCCTTTAATAAATTAC
CTGCCGAAATTCCTACGAAAAAACACACAGCACAAACAGCCGCCGACATC
GGCACCGGGGGACCGCCCGGACCCGGCGCCGTCGGCAGCCAGCCTGGCGG
ACTCGTCCTACCAGTACCCGGACCCTTCGCCGGCCAACTCGCCCTCCTCC
TCCTCCATCATGCTCAACTCCACGGCGACGGTCATGTCCGAGGCGGTGCT
GAGCACGGCGGTGCGGGACGGC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9708:85..1306+
>mRNA_L-elsbetiae_contig9708.18680.1 ID=mRNA_L-elsbetiae_contig9708.18680.1|Name=mRNA_L-elsbetiae_contig9708.18680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig9708:85..1306+ (Laminarionema elsbetiae ELsaHSoW15) ATGGCCGGCGGGTCGGGCTACAACGGGGATGTGTCGGCGTCGAGCGCGAC AGCCATTCCCCCTCCCGCGTACAAGATGGCCGGCGGGTCGGGCTACAACG GGGATGTGTCGGCGTCGAGCGCGACAGCCATTCCCCCTCCCGCGTACAAG CACAAACAGCCGCCGACATCGGCACCGGGGGACCGCCCGGACCCGGCGCC GTCGGCAGCCAGCCTGGCGGACTCGTCCTACCAGTACCCGGACCCTTCGC CGGCCAACTCGCCCTCCTCCTCCTCCATCATGCTCAACTCCACGGCGACG GTCATGTCCGAGGCGGTGCTGAGCACGGCGGTGCGGGACGGCCACAAACA GCCGCCGACATCGGCACCGGGGGACCGCCCGGACCCGGCGCCGTCGGCAG CCAGCCTGGCGGACTCGTCCTACCAGTACCCGGACCCTTCGCCGGCCAAC TCGCCCTCCTCCTCCTCCATCATGCTCAACTCCACGGCGACGGTCATGTC CGAGGCGGTGCTGAGCACGGCGGTGCGGGACGGC back to top