mRNA_L-elsbetiae_contig9708.18680.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9708.18680.1
Unique NamemRNA_L-elsbetiae_contig9708.18680.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9708.18680.1 vs. uniprot
Match: D7FWJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWJ1_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.600e-12
Identity = 54/84 (64.29%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:   31 NGDV--SASSATAIPPPAYKHKQPPTSAPGDRPDPAPSAASLADSSYXXXXXXXXXXXSSSSIMLNSTATVMSEAVLSTAVRDG 276
            NGDV  S  S   +PPPAYK   PP SA   RPDPAPSAASLADSSY           S SS MLNSTATVMSEAVLSTAV +G
Sbjct:  272 NGDVPGSTGSTAGVPPPAYK---PPMSA---RPDPAPSAASLADSSYQYPDPSPAN--SPSSAMLNSTATVMSEAVLSTAVGEG 347
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9708.18680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWJ1_ECTSI2.600e-1264.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9708contigL-elsbetiae_contig9708:85..1306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue4.1e-11
Seed eggNOG ortholog2880.D7FWJ1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size277
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9708.18680.1prot_L-elsbetiae_contig9708.18680.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9708 94..1306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817035.1082706-UTR-L-elsbetiae_contig9708:84..931622817035.1082706-UTR-L-elsbetiae_contig9708:84..93Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9708 85..93 +
1691683998.304257-UTR-L-elsbetiae_contig9708:84..931691683998.304257-UTR-L-elsbetiae_contig9708:84..93Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9708 85..93 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817035.1194823-CDS-L-elsbetiae_contig9708:93..1681622817035.1194823-CDS-L-elsbetiae_contig9708:93..168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 94..168 +
1691683998.3147287-CDS-L-elsbetiae_contig9708:93..1681691683998.3147287-CDS-L-elsbetiae_contig9708:93..168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 94..168 +
1622817035.1309052-CDS-L-elsbetiae_contig9708:1114..13061622817035.1309052-CDS-L-elsbetiae_contig9708:1114..1306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 1115..1306 +
1691683998.3232312-CDS-L-elsbetiae_contig9708:1114..13061691683998.3232312-CDS-L-elsbetiae_contig9708:1114..1306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9708 1115..1306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9708.18680.1

>prot_L-elsbetiae_contig9708.18680.1 ID=prot_L-elsbetiae_contig9708.18680.1|Name=mRNA_L-elsbetiae_contig9708.18680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MAGGSGYNGDVSASSATAIPPPAYKHKQPPTSAPGDRPDPAPSAASLADS
SYQYPDPSPANSPSSSSIMLNSTATVMSEAVLSTAVRDG
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mRNA from alignment at L-elsbetiae_contig9708:85..1306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9708.18680.1 ID=mRNA_L-elsbetiae_contig9708.18680.1|Name=mRNA_L-elsbetiae_contig9708.18680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1222bp|location=Sequence derived from alignment at L-elsbetiae_contig9708:85..1306+ (Laminarionema elsbetiae ELsaHSoW15)
AATGGAGTCATGGCCGGCGGGTCGGGCTACAACGGGGATGTGTCGGCGTC
GAGCGCGACAGCCATTCCCCCTCCCGCGTACAAGGTGAGAGCGCGTCGGC
GGAGACGGAGAGTGGGTGGGGTGTGACAGAGAGAGCGGTCGGGGGGGGGG
GGGGGGGGTATATGCTGGTTTCCTGTGTCGCGGTCTTTATTGCCCCCGCT
CGCTTTGTTGTGCTGAATCTTTTCTCAAGACGCCAGAGCGGGAAGGCAGG
AGGCCCTACAGTCGGTATTGTGGAACGTGTGGGGTGTGTTCTCGTGGTAT
TTCTCGGGTGGGGCTGTGGTCGAGAGCGACACCCCAGAAATAACTGAGGT
CTGCGTTTACAGCTGACTCTGTTGTTCTATGTATGCAGTCCGTAAGAAGC
TCTTGGCGGCGTCGCACCCGGGCAACAACAGCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCGGTTTTTAATATTGGAGGAGGGGGGGGGGTCGATGAAGG
GGCCAGAGGCGGACCAACACTTTTNNNNNNNNNNTTTTTTTTTTCATTCC
GTAAATGGCCCTTGGGGGCGTCCCCCCCGGGAAACAACACCCCCCCCCCC
CCCCCGCTCTGAACGTCCGTGTTTGTTAGATATGAGAAGGGTACACTTGC
GTCAAAGGTGGCCAAGGCCAAGACCTCATTTATTTGCGGGGACGTCCGTG
ACTGCAGCCGAAAGACATCTCTAGGAGCGCGCGTGCATGATAGATACGTA
GTGTTGCCCCCGTTCTCGAAGGATGTTTCCGATGTATGTATTTATTTGCC
TCAAGGGTAAATGGTGCCTGCACCGCTGCTGATGTCCCCCCTCCCTCCCT
GCAGCGGCCCCACAGACCGCAACAACAGGCCGGCCTACACCCTGTTCACC
CCCCCCTGGCCCTCACACCGCCCCGTCCGCCCATCCATCCGCTGTGTGCT
TGCTAAATATGTATGCATGTATGTATGGGTATGGGCCTTTAATAAATTAC
CTGCCGAAATTCCTACGAAAAAACACACAGCACAAACAGCCGCCGACATC
GGCACCGGGGGACCGCCCGGACCCGGCGCCGTCGGCAGCCAGCCTGGCGG
ACTCGTCCTACCAGTACCCGGACCCTTCGCCGGCCAACTCGCCCTCCTCC
TCCTCCATCATGCTCAACTCCACGGCGACGGTCATGTCCGAGGCGGTGCT
GAGCACGGCGGTGCGGGACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9708:85..1306+

>mRNA_L-elsbetiae_contig9708.18680.1 ID=mRNA_L-elsbetiae_contig9708.18680.1|Name=mRNA_L-elsbetiae_contig9708.18680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig9708:85..1306+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGGCGGGTCGGGCTACAACGGGGATGTGTCGGCGTCGAGCGCGAC
AGCCATTCCCCCTCCCGCGTACAAGATGGCCGGCGGGTCGGGCTACAACG
GGGATGTGTCGGCGTCGAGCGCGACAGCCATTCCCCCTCCCGCGTACAAG
CACAAACAGCCGCCGACATCGGCACCGGGGGACCGCCCGGACCCGGCGCC
GTCGGCAGCCAGCCTGGCGGACTCGTCCTACCAGTACCCGGACCCTTCGC
CGGCCAACTCGCCCTCCTCCTCCTCCATCATGCTCAACTCCACGGCGACG
GTCATGTCCGAGGCGGTGCTGAGCACGGCGGTGCGGGACGGCCACAAACA
GCCGCCGACATCGGCACCGGGGGACCGCCCGGACCCGGCGCCGTCGGCAG
CCAGCCTGGCGGACTCGTCCTACCAGTACCCGGACCCTTCGCCGGCCAAC
TCGCCCTCCTCCTCCTCCATCATGCTCAACTCCACGGCGACGGTCATGTC
CGAGGCGGTGCTGAGCACGGCGGTGCGGGACGGC
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