mRNA_L-elsbetiae_contig9702.18677.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9702.18677.1
Unique NamemRNA_L-elsbetiae_contig9702.18677.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9702.18677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9702contigL-elsbetiae_contig9702:568..1285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size720
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817034.879289-CDS-L-elsbetiae_contig9702:567..9271622817034.879289-CDS-L-elsbetiae_contig9702:567..927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9702 568..927 +
1691683998.18222-CDS-L-elsbetiae_contig9702:567..9271691683998.18222-CDS-L-elsbetiae_contig9702:567..927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9702 568..927 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817034.8942356-UTR-L-elsbetiae_contig9702:927..12851622817034.8942356-UTR-L-elsbetiae_contig9702:927..1285Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9702 928..1285 +
1691683998.1918194-UTR-L-elsbetiae_contig9702:927..12851691683998.1918194-UTR-L-elsbetiae_contig9702:927..1285Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9702 928..1285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9702.18677.1prot_L-elsbetiae_contig9702.18677.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9702 568..927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9702.18677.1

>prot_L-elsbetiae_contig9702.18677.1 ID=prot_L-elsbetiae_contig9702.18677.1|Name=mRNA_L-elsbetiae_contig9702.18677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
PIVITARRGRSPGRAATAVAGRSSALAAVVAAAVAAEVGSARGWGFLVGG
SSFVLPFPSPLPAAAAAARAAAAAAATNPLTFALISLGGGTAVLARGQGA
TEGRAMASRMRRRFEDLEE*
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mRNA from alignment at L-elsbetiae_contig9702:568..1285+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9702.18677.1 ID=mRNA_L-elsbetiae_contig9702.18677.1|Name=mRNA_L-elsbetiae_contig9702.18677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=718bp|location=Sequence derived from alignment at L-elsbetiae_contig9702:568..1285+ (Laminarionema elsbetiae ELsaHSoW15)
CCCATCGTCATCACCGCGCGGCGAGGAAGATCGCCGGGGCGAGCCGCTAC
GGCGGTGGCCGGTCGCTCCTCTGCTCTCGCTGCTGTTGTCGCTGCCGCTG
TCGCTGCTGAAGTAGGTTCGGCGCGGGGGTGGGGTTTCCTTGTCGGTGGA
AGCAGCTTCGTCCTTCCGTTCCCTTCTCCTCTTCCTGCCGCCGCTGCCGC
CGCTCGGGCTGCTGCTGCTGCTGCTGCTACTAACCCCCTTACCTTTGCCC
TTATTAGCCTGGGCGGCGGAACCGCCGTTCTTGCTCGCGGGCAGGGGGCT
ACTGAGGGTCGTGCTATGGCTAGTCGAATGAGAAGGCGGTTTGAAGACCT
TGAAGAATGAGGCGTCGCTCACGCAGTCGTCGCCGCCGTTGCCCGCAGCT
ACAGCTGCCGGTGGCGGCGCCATGGTAGAGCTAGCAGGGGGGGGTGTTGG
CCCATCCTCGTCGTCCTCCGCAAAGATCGAAGCGAATTCAAACTCCGGCG
AGGACGTCATTTGAGGAACGGCCGCGGTGCCGATAGCGCTGGTCCTGGTG
GAAGAGGTGCATGGCCGTGTTGCTCCCGATGTTGCAGTTGACAGTGCAGT
GCCAGCGGGTTGTGCGATACTGATGTTTGAGAAAAAGGGACGTGCTGCTC
GGTTTTCTCCAGAATTCAAGTCAAACGACGGGGCCAGCCGTAATGATTCC
ATCGGCTCTCGCTGGGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9702:568..1285+

>mRNA_L-elsbetiae_contig9702.18677.1 ID=mRNA_L-elsbetiae_contig9702.18677.1|Name=mRNA_L-elsbetiae_contig9702.18677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig9702:568..1285+ (Laminarionema elsbetiae ELsaHSoW15)
CCCATCGTCATCACCGCGCGGCGAGGAAGATCGCCGGGGCGAGCCGCTAC
GGCGGTGGCCGGTCGCTCCTCTGCTCTCGCTGCTGTTGTCGCTGCCGCTG
TCGCTGCTGAAGTAGGTTCGGCGCGGGGGTGGGGTTTCCTTGTCGGTGGA
AGCAGCTTCGTCCTTCCGTTCCCTTCTCCTCTTCCTGCCGCCGCTGCCGC
CGCTCGGGCTGCTGCTGCTGCTGCTGCTACTAACCCCCTTACCTTTGCCC
TTATTAGCCTGGGCGGCGGAACCGCCGTTCTTGCTCGCGGGCAGGGGGCT
ACTGAGGGTCGTGCTATGGCTAGTCGAATGAGAAGGCGGTTTGAAGACCT
TGAAGAATGACCCATCGTCATCACCGCGCGGCGAGGAAGATCGCCGGGGC
GAGCCGCTACGGCGGTGGCCGGTCGCTCCTCTGCTCTCGCTGCTGTTGTC
GCTGCCGCTGTCGCTGCTGAAGTAGGTTCGGCGCGGGGGTGGGGTTTCCT
TGTCGGTGGAAGCAGCTTCGTCCTTCCGTTCCCTTCTCCTCTTCCTGCCG
CCGCTGCCGCCGCTCGGGCTGCTGCTGCTGCTGCTGCTACTAACCCCCTT
ACCTTTGCCCTTATTAGCCTGGGCGGCGGAACCGCCGTTCTTGCTCGCGG
GCAGGGGGCTACTGAGGGTCGTGCTATGGCTAGTCGAATGAGAAGGCGGT
TTGAAGACCTTGAAGAATGA
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