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Homology
BLAST of mRNA_L-elsbetiae_contig970.18672.1 vs. uniprot
Match: A0A6H5JP24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP24_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.070e-33 Identity = 56/71 (78.87%), Postives = 67/71 (94.37%), Query Frame = 1 Query: 25 DLLVGLASPGAFPCPEGSPSYNVQFSKKAGDGHLVAFGTEFGQLVVIDTRAEARVRRDHSGPVGWGETDRT 237
D ++GLASPGAFPCPEGSP+YN+QFSK+AGDGHLVAFGTE G LV++DTRAEA V+RDH+GPVGWG+TDR+
Sbjct: 26 DYVMGLASPGAFPCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRS 96
BLAST of mRNA_L-elsbetiae_contig970.18672.1 vs. uniprot
Match: D8LHZ2_ECTSI (Denticleless homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ2_ECTSI) HSP 1 Score: 127 bits (320), Expect = 2.030e-32 Identity = 55/71 (77.46%), Postives = 66/71 (92.96%), Query Frame = 1 Query: 25 DLLVGLASPGAFPCPEGSPSYNVQFSKKAGDGHLVAFGTEFGQLVVIDTRAEARVRRDHSGPVGWGETDRT 237
D ++GLASPGAFPCPEGSP+YN+QFSK+AGDGH VAFGTE G LV++DTRAEA V+RDH+GPVGWG+TDR+
Sbjct: 32 DYVMGLASPGAFPCPEGSPTYNLQFSKRAGDGHFVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRS 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig970.18672.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match Name | E-value | Identity | Description | |
A0A6H5JP24_9PHAE | 2.070e-33 | 78.87 | Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... | [more] |
D8LHZ2_ECTSI | 2.030e-32 | 77.46 | Denticleless homolog n=1 Tax=Ectocarpus siliculosu... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 127.9 |
Seed ortholog evalue | 2.3e-27 |
Seed eggNOG ortholog | 2880.D8LHZ2 |
KEGG ko | ko:K11790 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000075,GO:0000077,GO:0000151,GO:0000209,GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010564,GO:0010948,GO:0015630,GO:0016567,GO:0018130,GO:0019438,GO:0019538,GO:0019941,GO:0019985,GO:0023052,GO:0030163,GO:0031461,GO:0031464,GO:0031465,GO:0031570,GO:0031572,GO:0032446,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045786,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0051726,GO:0065007,GO:0070647,GO:0071704,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0072425,GO:0080008,GO:0090304,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1902494,GO:1902749,GO:1902750,GO:1990234 |
EggNOG free text desc. | signal transduction involved in G2 DNA damage checkpoint |
EggNOG OGs | KOG0321@1,KOG0321@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko04121 |
Exons | 1 |
Model size | 256 |
Cds size | 255 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622817034.5962524-CDS-L-elsbetiae_contig970:10302..10557 | 1622817034.5962524-CDS-L-elsbetiae_contig970:10302..10557 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig970 10303..10557 + |
1691683997.9696221-CDS-L-elsbetiae_contig970:10302..10557 | 1691683997.9696221-CDS-L-elsbetiae_contig970:10302..10557 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig970 10303..10557 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig970.18672.1 >prot_L-elsbetiae_contig970.18672.1 ID=prot_L-elsbetiae_contig970.18672.1|Name=mRNA_L-elsbetiae_contig970.18672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
APHHPSDVDLLVGLASPGAFPCPEGSPSYNVQFSKKAGDGHLVAFGTEFG QLVVIDTRAEARVRRDHSGPVGWGETDRTKTISSG back to topmRNA from alignment at L-elsbetiae_contig970:10303..10557+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig970.18672.1 ID=mRNA_L-elsbetiae_contig970.18672.1|Name=mRNA_L-elsbetiae_contig970.18672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=255bp|location=Sequence derived from alignment at L-elsbetiae_contig970:10303..10557+ (Laminarionema elsbetiae ELsaHSoW15) GCACCGCACCACCCGTCAGACGTAGACCTGCTGGTGGGGCTGGCCAGCCC
GGGCGCCTTCCCCTGCCCCGAGGGGTCCCCGTCCTACAACGTCCAGTTCA
GCAAGAAGGCCGGGGACGGCCACCTCGTCGCCTTCGGGACGGAGTTCGGC
CAACTGGTGGTCATCGACACGAGGGCCGAGGCGAGGGTCCGGAGGGACCA
CAGCGGCCCCGTGGGGTGGGGGGAGACGGACAGGACCAAGACCATCAGTA
GCGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig970:10303..10557+ >mRNA_L-elsbetiae_contig970.18672.1 ID=mRNA_L-elsbetiae_contig970.18672.1|Name=mRNA_L-elsbetiae_contig970.18672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig970:10303..10557+ (Laminarionema elsbetiae ELsaHSoW15) GCACCGCACCACCCGTCAGACGTAGACCTGCTGGTGGGGCTGGCCAGCCC GGGCGCCTTCCCCTGCCCCGAGGGGTCCCCGTCCTACAACGTCCAGTTCA GCAAGAAGGCCGGGGACGGCCACCTCGTCGCCTTCGGGACGGAGTTCGGC CAACTGGTGGTCATCGACACGAGGGCCGAGGCGAGGGTCCGGAGGGACCA CAGCGGCCCCGTGGGGTGGGGGGAGACGGACAGGACCAAGACCATCAGTA GCGGGGCACCGCACCACCCGTCAGACGTAGACCTGCTGGTGGGGCTGGCC AGCCCGGGCGCCTTCCCCTGCCCCGAGGGGTCCCCGTCCTACAACGTCCA GTTCAGCAAGAAGGCCGGGGACGGCCACCTCGTCGCCTTCGGGACGGAGT TCGGCCAACTGGTGGTCATCGACACGAGGGCCGAGGCGAGGGTCCGGAGG GACCACAGCGGCCCCGTGGGGTGGGGGGAGACGGACAGGACCAAGACCAT CAGTAGCGGG back to top
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