mRNA_L-elsbetiae_contig970.18672.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig970.18672.1
Unique NamemRNA_L-elsbetiae_contig970.18672.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig970.18672.1 vs. uniprot
Match: A0A6H5JP24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP24_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.070e-33
Identity = 56/71 (78.87%), Postives = 67/71 (94.37%), Query Frame = 1 
Query:   25 DLLVGLASPGAFPCPEGSPSYNVQFSKKAGDGHLVAFGTEFGQLVVIDTRAEARVRRDHSGPVGWGETDRT 237
            D ++GLASPGAFPCPEGSP+YN+QFSK+AGDGHLVAFGTE G LV++DTRAEA V+RDH+GPVGWG+TDR+
Sbjct:   26 DYVMGLASPGAFPCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRS 96
[Close]
BLAST of mRNA_L-elsbetiae_contig970.18672.1 vs. uniprot
Match: D8LHZ2_ECTSI (Denticleless homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ2_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.030e-32
Identity = 55/71 (77.46%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:   25 DLLVGLASPGAFPCPEGSPSYNVQFSKKAGDGHLVAFGTEFGQLVVIDTRAEARVRRDHSGPVGWGETDRT 237
            D ++GLASPGAFPCPEGSP+YN+QFSK+AGDGH VAFGTE G LV++DTRAEA V+RDH+GPVGWG+TDR+
Sbjct:   32 DYVMGLASPGAFPCPEGSPTYNLQFSKRAGDGHFVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRS 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig970.18672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP24_9PHAE2.070e-3378.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHZ2_ECTSI2.030e-3277.46Denticleless homolog n=1 Tax=Ectocarpus siliculosu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig970contigL-elsbetiae_contig970:10303..10557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue2.3e-27
Seed eggNOG ortholog2880.D8LHZ2
KEGG koko:K11790
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000151,GO:0000209,GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010564,GO:0010948,GO:0015630,GO:0016567,GO:0018130,GO:0019438,GO:0019538,GO:0019941,GO:0019985,GO:0023052,GO:0030163,GO:0031461,GO:0031464,GO:0031465,GO:0031570,GO:0031572,GO:0032446,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045786,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0051726,GO:0065007,GO:0070647,GO:0071704,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0072425,GO:0080008,GO:0090304,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1902494,GO:1902749,GO:1902750,GO:1990234
EggNOG free text desc.signal transduction involved in G2 DNA damage checkpoint
EggNOG OGsKOG0321@1,KOG0321@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817034.5962524-CDS-L-elsbetiae_contig970:10302..105571622817034.5962524-CDS-L-elsbetiae_contig970:10302..10557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig970 10303..10557 +
1691683997.9696221-CDS-L-elsbetiae_contig970:10302..105571691683997.9696221-CDS-L-elsbetiae_contig970:10302..10557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig970 10303..10557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig970.18672.1prot_L-elsbetiae_contig970.18672.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig970 10303..10557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig970.18672.1

>prot_L-elsbetiae_contig970.18672.1 ID=prot_L-elsbetiae_contig970.18672.1|Name=mRNA_L-elsbetiae_contig970.18672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
APHHPSDVDLLVGLASPGAFPCPEGSPSYNVQFSKKAGDGHLVAFGTEFG
QLVVIDTRAEARVRRDHSGPVGWGETDRTKTISSG
back to top

mRNA from alignment at L-elsbetiae_contig970:10303..10557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig970.18672.1 ID=mRNA_L-elsbetiae_contig970.18672.1|Name=mRNA_L-elsbetiae_contig970.18672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=255bp|location=Sequence derived from alignment at L-elsbetiae_contig970:10303..10557+ (Laminarionema elsbetiae ELsaHSoW15)
GCACCGCACCACCCGTCAGACGTAGACCTGCTGGTGGGGCTGGCCAGCCC
GGGCGCCTTCCCCTGCCCCGAGGGGTCCCCGTCCTACAACGTCCAGTTCA
GCAAGAAGGCCGGGGACGGCCACCTCGTCGCCTTCGGGACGGAGTTCGGC
CAACTGGTGGTCATCGACACGAGGGCCGAGGCGAGGGTCCGGAGGGACCA
CAGCGGCCCCGTGGGGTGGGGGGAGACGGACAGGACCAAGACCATCAGTA
GCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig970:10303..10557+

>mRNA_L-elsbetiae_contig970.18672.1 ID=mRNA_L-elsbetiae_contig970.18672.1|Name=mRNA_L-elsbetiae_contig970.18672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig970:10303..10557+ (Laminarionema elsbetiae ELsaHSoW15)
GCACCGCACCACCCGTCAGACGTAGACCTGCTGGTGGGGCTGGCCAGCCC
GGGCGCCTTCCCCTGCCCCGAGGGGTCCCCGTCCTACAACGTCCAGTTCA
GCAAGAAGGCCGGGGACGGCCACCTCGTCGCCTTCGGGACGGAGTTCGGC
CAACTGGTGGTCATCGACACGAGGGCCGAGGCGAGGGTCCGGAGGGACCA
CAGCGGCCCCGTGGGGTGGGGGGAGACGGACAGGACCAAGACCATCAGTA
GCGGGGCACCGCACCACCCGTCAGACGTAGACCTGCTGGTGGGGCTGGCC
AGCCCGGGCGCCTTCCCCTGCCCCGAGGGGTCCCCGTCCTACAACGTCCA
GTTCAGCAAGAAGGCCGGGGACGGCCACCTCGTCGCCTTCGGGACGGAGT
TCGGCCAACTGGTGGTCATCGACACGAGGGCCGAGGCGAGGGTCCGGAGG
GACCACAGCGGCCCCGTGGGGTGGGGGGAGACGGACAGGACCAAGACCAT
CAGTAGCGGG
back to top