mRNA_L-elsbetiae_contig967.18645.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig967.18645.1
Unique NamemRNA_L-elsbetiae_contig967.18645.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig967.18645.1 vs. uniprot
Match: A0A6H5K6Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 6.590e-7
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:  366 SPARLWLRNEVFDGVLPLRATGVPLSPAR 452
            +  RLWLRNEVFDGVLPLRATGVPLSPAR
Sbjct:    3 TTTRLWLRNEVFDGVLPLRATGVPLSPAR 31
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BLAST of mRNA_L-elsbetiae_contig967.18645.1 vs. uniprot
Match: D7FP07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP07_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-6
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:  366 SPARLWLRNEVFDGVLPLRATGVPLSPAR 452
            +  RLWLRNEVFDGVLPLRATGVPLSPAR
Sbjct:    3 TTTRLWLRNEVFDGVLPLRATGVPLSPAR 31
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig967.18645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6Y6_9PHAE6.590e-789.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP07_ECTSI1.150e-689.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig967contigL-elsbetiae_contig967:22906..27539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size453
Cds size108
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig967.18645.1prot_L-elsbetiae_contig967.18645.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig967 27432..27539 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.7610035-UTR-L-elsbetiae_contig967:22905..229931622817031.7610035-UTR-L-elsbetiae_contig967:22905..22993Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig967 22906..22993 +
1691683995.854413-UTR-L-elsbetiae_contig967:22905..229931691683995.854413-UTR-L-elsbetiae_contig967:22905..22993Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig967 22906..22993 +
1622817031.77248-UTR-L-elsbetiae_contig967:27175..274311622817031.77248-UTR-L-elsbetiae_contig967:27175..27431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig967 27176..27431 +
1691683995.8666327-UTR-L-elsbetiae_contig967:27175..274311691683995.8666327-UTR-L-elsbetiae_contig967:27175..27431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig967 27176..27431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817031.7835913-CDS-L-elsbetiae_contig967:27431..275391622817031.7835913-CDS-L-elsbetiae_contig967:27431..27539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig967 27432..27539 +
1691683995.8773558-CDS-L-elsbetiae_contig967:27431..275391691683995.8773558-CDS-L-elsbetiae_contig967:27431..27539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig967 27432..27539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig967.18645.1

>prot_L-elsbetiae_contig967.18645.1 ID=prot_L-elsbetiae_contig967.18645.1|Name=mRNA_L-elsbetiae_contig967.18645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=36bp
MSATTSSSPARLWLRNEVFDGVLPLRATGVPLSPAR
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mRNA from alignment at L-elsbetiae_contig967:22906..27539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig967.18645.1 ID=mRNA_L-elsbetiae_contig967.18645.1|Name=mRNA_L-elsbetiae_contig967.18645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4634bp|location=Sequence derived from alignment at L-elsbetiae_contig967:22906..27539+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGAGAGAACCTACGGCTATCGGTGGAGAGAGGGAGAGCAGTGTTGCT
GAGTCTTGCGGCTGGGATCGGTGCCGCTTGTGATTGAGGTGGGACCTCCT
TTTGGAAGGAGAAAAGCGTGTTGTGTTTTTTTTTGAACGGCATTACTTTT
TTGCGAGACCCCATACGATGAAAGTCTGTCGTCGTGCTTGCGGTTCGCAA
TGCTCACACACAGGATTGGCTGCGGTTTGCTTGAGCGGTGCGAGCCGTCG
GCTTTCGTTCTACTTTTTTTTTGTTCACACATTTATCGACATCGGCGAAC
CCCCCATGCCAGTTTTTCCGTATGTGTCGTACACATCACAGCAATGCATC
ACACCACAAAGAACACACGACACCTCGTGCGTGCGCTATCTGTTGGTGTG
GACGTGTGGATAGAGCAAAGAACCGCAACTATGAGAAAGCCTGTCTGGCT
TTCATTTGCACGCATTCGCCGCGTGTGCTCGCTTGCTCGCGTGGTCCTGC
TGCGGACTATCTCGATTGACTGTTCACACAACTGCTGTACATTAGTCTTC
GTACAAACACACAGCAGGCACGTATGTAAATACTGTAGCACTACACACAC
ATATTAGCTGCTAGACACAGCCTGGTGCGTGTTGGTCATGATTTGGTCAC
CTCCACACGAGCTCTCTTTCCGTGTGGTGGCCGGAGAATCGGAGAGAGAG
AAACAATGCTTTGCACAAACGTATACATTCTACTCCGTATAGAGATATGT
AGCTAGATATATGTTACGGATACTATTTAGTTATTATGCGACATACACTG
CTGTATCGTGGTACGAGTACTCCTACTCAGACGTTCCTCTTGTTCATGGT
ACATACACAATGTGTGGACCGGACTTACCGTTACCAATGCAAGTAGGGTG
CAGCATTGCTTTCTTCAATTTCTTCGCGGCCGGAGCATCAGAGACAGGGA
CAAAGAGAGACACTGGCACATGTGTGTCTAGGTTGCACTTGGACGTTCTG
TGTCCTGTGTAGAACATACTGGAAAGAAGCCTACTTTTGAAGTAGTTATT
TGCAGTGGAATCAATTGGAAGCGTGCGTAACGGGTTCCAGCAGACAAAAG
AGAAAAGAGAGCACAGGATGCAGCAGCACTTGTGTGTACATGCATGTACT
TCGCACATGTATGTGTTGAGCACACAGCTAAGCGCTTCTTTTGTAACACA
CATATCGTACATGGGTGCAGAATGTTTGTTTGATCGCCACGACGAGGGGA
CACACACCTGTTAATCCCCGTACATACCGTAGGTGACATAAGATAAGACA
CCCCCTGGGCCGATTTTCAAAGCTCAAGTACTCCACAGCAAGCAGAGCGT
CAGTCGCGAAAAGGGCGGCGTTGAAAAGATCTCGTCGAGAGCTTTCCGAA
AATGTGGCGTTTGTGGTTAGAATCGTATTCGTTGCGGAGTAACCAAGCTT
TCAATATCGGTCCAGGGGGTGTCTTATCTTATGTCACCTACGGCACATAC
ATACCCGGCTTTCACGAGGCCGCAGGCAGGGTGCCCCTGGTAACGGGTAC
CGGTGGTGTTTATTTATGTTTTGATGATGAAATGAAGCGGCACCATGCTT
CGGCGGTGGAAAGCAGGGAAGCCAGGGGAAAGGCACAATCCGCATATATG
TATATCTATATAGCTGCCTGCTCAAAACCAGCGGCAGAGAGGATAGATAG
CCACAGCAGTGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
GCAGCAGCCGCAGCAGCTGCAGCTCTCCCTCAGGGTACCGCTCCAGCAAA
CACCTCTGGAGACCAACAGTAAATATCAAAGGACAACGTCCTTTTGTCCT
TTTGGTGACCAAGACCGCCGGGCAGCGCAACGTTCTTTTTGTTCTCTTTG
TTCTCCTCCCATTATTGCCTTATTTTTTCGTCGTCTGCCCCACTGGCCCC
CTTCCCCCACAACGGCTAGCTAGACGACCCAACCGGGATCACACAGCTGA
AGCGGTGTTGTTGCAATTCTAGTTTAAGGAGGCGCATAATTGTCCAAAAA
CGAGCTTCATTTTGGCCAGTGCTCGCCGCTGTGTGCATTTTTCCTGATTC
AAAAGGTTCCCGCCTGTACAAAAGCCCGGGTACACTCTTCTTCGGGGGCT
CCGCAGTTTTTATGCTCGTTTCGCCAAATATTACGTCACTGTATGTGATA
CCGATTGAAACCCATATCGAGCCCTTGCTCTAGCTAGTGTGGGTCAGGTT
CGTGTGGGTCAGGTTCATCTGATTCATTGATTATTATTTTTTAAATGAAG
CGAATCGATGCTCTGGTCGCGGAGTTGTACGGATTATTTGGGGTGACCGA
CAAAGTACGACGGGACCCCGCAGGCAACAATCAAGCTCGTACGAAGACAT
CCTCACCAAAAAGGCCGGCGCTCTGGAGGCCCCGCGCTGGCACCCCGCGC
CCGCCCTATGTATTCAGGAGCTCACATTCTCCATCCCGGACGAAATACAC
CACACACGACACGATATACTACTCATGACCAGCGTCGGTGCGGATTTCGG
ACCCTCAGTGGCGCTGTAAGAAGCGTCAAATCAGAGCTGCCTCCGGACAA
GCTTTAGGGGCTCGCCTAGACCGGCAGCAACAGACAGCAGCAGCTGTAGT
TAGTGTCCTGCATCACCATTTGCGGTGTTAGAGGGTGTCCCTGCACACTT
GAGACCCCACTCTTGCCATAGAGCGCGTAGCCTTGTCGTGGATCAAGAAC
TTCTGTTTCTGCGCCCACATCGCCCAAAATCGCGCACTACATACATACTG
ACTGTGTGTCTGCGAACTGGCTCTTTCCTCCCCTATCTATTCAGTACCAA
AGCTCGTGGCGGCCGAGAGTTGTGTCCTGCACAGATTGACGCCTATATAT
ATATATTTTTTTTTTTTTTTTGCCAACCACGCACCCAAAAACCAAACAAA
AAAAAAGACACGCACCCAAGGACCTTATCTACACATCCTCTTACCTACTT
CTGACTTGGATTAAGTCCACGTCGCTGAGCTTTCCGCTTCCGTGTCGCCT
TGCCACCCCAGCACACTGAAAACCAGAGTGTTTTTTTGGGGGGGATACGA
AAACGGGGGTACCCATCCCACCTGTGTGCCCCCCTCCCGCATATTTATGC
GCCTCCTTAGATTAGAAGTGCAGTGACACTGGAAGAGCATATACCGGTAC
TCTTCCTCTGATACCTCGATGGATTCCACCAACGACCCCCCCCCCCCCCC
CCATTAATTGGGGGCGCGGGGGGGGGGGGAAGGCGGAGGGGCACAAAAGC
CCCAGGGACAAACGAATTGTTTTGGCTGTCGTTGGTTTNNNNNNNNNNAA
GTGCAGTGACACGGGAACAGCATATACCGGTTCTCTTCCTCTGATACCTC
GATGGATTCCACCAACGCCCCCCCCCCCCCCATCATTAATTGGTGCCGCG
GAGGCGGTTGGACGGCGTTGGTGCACATAAGCCCGAGGTACATACGTATT
GTTGTTGCTGTCGTTGTCTTCACACATTAAAAAGCGTTCCGATCTCTCTT
TCCAGTACCTCCATGAGTCCGTGCTAGTCCAGCACTGGCGCGGTCGATTC
AATTCCCGTCGTCACAGGATAGGGAACTGGCCTTCTAAACGGGGTAAATG
TACCTAATAACGAAGAAAACAAGATTGACCGGGTAGGCCCTCCACAAAGC
ACTAAGAAACAAACAATATCAGACACGCAGAACAGGTTGTAACTTTCCCT
AAAAGGGCACAGGCTACTGAAAAATGAAAAAAATGAAATGGACCCGAAGG
GTACATAAAGACAAAAACCAAAGATCAAGATACACGATAGTCTGGAGCCT
CGCCGCTACATAAATACCCTCTACACGCTACATAACATACCGCGAGGTGA
AAACATTGTTAGGTACTACATGCGGCATGCATGCTTTTGAAGGGGGGAGG
GACGCCATGGTTTTGGACCCGGCCACGAGCCGCTCGCTGCTCGAAAAACG
CCTCCTGATAAAGGCAGGCAGTCCCAAGAGCAACAAAAATAAGCAAAACG
GCCGAGCAAAAATTGCCGTCGCACGGCGGTGCGGTACATTACAAGAGATC
CATTTCAGACAGGGTAAATGAAATGTAGCTTTCACCTTCACGCTGAGAAA
CGCCAATATCGCCACGAAGCCCCTCCCCCCCTACGTTCGCCACCGCGGTG
CCCCAACGTTGCTCCCCCCCCCCCCCCTCCCCTCTGGTCCTTCTTGTGTC
TCGTCGCCCCCGGGGTGCAGCAGAGGCAGCCGCAGCCAGCCCTCCTGGAC
GAGACAACATCTCGGAAATTTCCCAACTTTTTCCCCGGAAGTGTGGAAGG
GGGCGTTTTTGTCCGGTCGTGCTCGTCTTCGCCATCGACGGCGGCACAAG
GAAGGAATCGCGAAAAAATAGTCGGTGCTGGTAGTAGTCGTCGCAAGAGT
GGCGCTCTCGACCGAAACAGTTTGAAGCGTAGCAGCAGCAGCAGCAAGCA
GTTGTTGCAAACAGCAACGGGCAGTTATGTCGGCGACGACGTCGTCATCA
CCGGCGCGGCTGTGGCTGCGAAACGAGGTTTTCGACGGGGTGTTGCCGCT
GCGAGCGACGGGGGTTCCGCTGTCGCCGGCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig967:22906..27539+

>mRNA_L-elsbetiae_contig967.18645.1 ID=mRNA_L-elsbetiae_contig967.18645.1|Name=mRNA_L-elsbetiae_contig967.18645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=216bp|location=Sequence derived from alignment at L-elsbetiae_contig967:22906..27539+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCGACGACGTCGTCATCACCGGCGCGGCTGTGGCTGCGAAACGA
GGTTTTCGACGGGGTGTTGCCGCTGCGAGCGACGGGGGTTCCGCTGTCGC
CGGCGAGGATGTCGGCGACGACGTCGTCATCACCGGCGCGGCTGTGGCTG
CGAAACGAGGTTTTCGACGGGGTGTTGCCGCTGCGAGCGACGGGGGTTCC
GCTGTCGCCGGCGAGG
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