Homology
BLAST of mRNA_L-elsbetiae_contig967.18645.1 vs. uniprot
Match:
A0A6H5K6Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y6_9PHAE)
HSP 1 Score: 57.0 bits (136), Expect = 6.590e-7
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 3
Query: 366 SPARLWLRNEVFDGVLPLRATGVPLSPAR 452
+ RLWLRNEVFDGVLPLRATGVPLSPAR
Sbjct: 3 TTTRLWLRNEVFDGVLPLRATGVPLSPAR 31
BLAST of mRNA_L-elsbetiae_contig967.18645.1 vs. uniprot
Match:
D7FP07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP07_ECTSI)
HSP 1 Score: 57.0 bits (136), Expect = 1.150e-6
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 3
Query: 366 SPARLWLRNEVFDGVLPLRATGVPLSPAR 452
+ RLWLRNEVFDGVLPLRATGVPLSPAR
Sbjct: 3 TTTRLWLRNEVFDGVLPLRATGVPLSPAR 31
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig967.18645.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 6.59e-7 / Id = 89.66 Expect = 1.15e-6 / Id = 89.66 Sequence A0A6H5K6Y6_9PHAE D7FP07_ECTSI
Match Name E-value Identity Description
A0A6H5K6Y6_9PHAE 6.590e-7 89.66 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP07_ECTSI 1.150e-6 89.66 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category no signal peptide or anchor
Exons 2
Model size 453
Cds size 108
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817031.7610035-UTR-L-elsbetiae_contig967:22905..22993 1622817031.7610035-UTR-L-elsbetiae_contig967:22905..22993 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig967 22906..22993 +
1691683995.854413-UTR-L-elsbetiae_contig967:22905..22993 1691683995.854413-UTR-L-elsbetiae_contig967:22905..22993 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig967 22906..22993 +
1622817031.77248-UTR-L-elsbetiae_contig967:27175..27431 1622817031.77248-UTR-L-elsbetiae_contig967:27175..27431 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig967 27176..27431 +
1691683995.8666327-UTR-L-elsbetiae_contig967:27175..27431 1691683995.8666327-UTR-L-elsbetiae_contig967:27175..27431 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig967 27176..27431 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817031.7835913-CDS-L-elsbetiae_contig967:27431..27539 1622817031.7835913-CDS-L-elsbetiae_contig967:27431..27539 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig967 27432..27539 +
1691683995.8773558-CDS-L-elsbetiae_contig967:27431..27539 1691683995.8773558-CDS-L-elsbetiae_contig967:27431..27539 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig967 27432..27539 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig967.18645.1
>prot_L-elsbetiae_contig967.18645.1 ID=prot_L-elsbetiae_contig967.18645.1|Name=mRNA_L-elsbetiae_contig967.18645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=36bp
MSATTSSSPARLWLRNEVFDGVLPLRATGVPLSPAR back to top mRNA from alignment at L-elsbetiae_contig967:22906..27539+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig967.18645.1 ID=mRNA_L-elsbetiae_contig967.18645.1|Name=mRNA_L-elsbetiae_contig967.18645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4634bp|location=Sequence derived from alignment at L-elsbetiae_contig967:22906..27539+ (Laminarionema elsbetiae ELsaHSoW15)GTGGGAGAGAACCTACGGCTATCGGTGGAGAGAGGGAGAGCAGTGTTGCT
GAGTCTTGCGGCTGGGATCGGTGCCGCTTGTGATTGAG GTGGGACCTCCT
TTTGGAAGGAGAAAAGCGTGTTGTGTTTTTTTTTGAACGGCATTACTTTT
TTGCGAGACCCCATACGATGAAAGTCTGTCGTCGTGCTTGCGGTTCGCAA
TGCTCACACACAGGATTGGCTGCGGTTTGCTTGAGCGGTGCGAGCCGTCG
GCTTTCGTTCTACTTTTTTTTTGTTCACACATTTATCGACATCGGCGAAC
CCCCCATGCCAGTTTTTCCGTATGTGTCGTACACATCACAGCAATGCATC
ACACCACAAAGAACACACGACACCTCGTGCGTGCGCTATCTGTTGGTGTG
GACGTGTGGATAGAGCAAAGAACCGCAACTATGAGAAAGCCTGTCTGGCT
TTCATTTGCACGCATTCGCCGCGTGTGCTCGCTTGCTCGCGTGGTCCTGC
TGCGGACTATCTCGATTGACTGTTCACACAACTGCTGTACATTAGTCTTC
GTACAAACACACAGCAGGCACGTATGTAAATACTGTAGCACTACACACAC
ATATTAGCTGCTAGACACAGCCTGGTGCGTGTTGGTCATGATTTGGTCAC
CTCCACACGAGCTCTCTTTCCGTGTGGTGGCCGGAGAATCGGAGAGAGAG
AAACAATGCTTTGCACAAACGTATACATTCTACTCCGTATAGAGATATGT
AGCTAGATATATGTTACGGATACTATTTAGTTATTATGCGACATACACTG
CTGTATCGTGGTACGAGTACTCCTACTCAGACGTTCCTCTTGTTCATGGT
ACATACACAATGTGTGGACCGGACTTACCGTTACCAATGCAAGTAGGGTG
CAGCATTGCTTTCTTCAATTTCTTCGCGGCCGGAGCATCAGAGACAGGGA
CAAAGAGAGACACTGGCACATGTGTGTCTAGGTTGCACTTGGACGTTCTG
TGTCCTGTGTAGAACATACTGGAAAGAAGCCTACTTTTGAAGTAGTTATT
TGCAGTGGAATCAATTGGAAGCGTGCGTAACGGGTTCCAGCAGACAAAAG
AGAAAAGAGAGCACAGGATGCAGCAGCACTTGTGTGTACATGCATGTACT
TCGCACATGTATGTGTTGAGCACACAGCTAAGCGCTTCTTTTGTAACACA
CATATCGTACATGGGTGCAGAATGTTTGTTTGATCGCCACGACGAGGGGA
CACACACCTGTTAATCCCCGTACATACCGTAGGTGACATAAGATAAGACA
CCCCCTGGGCCGATTTTCAAAGCTCAAGTACTCCACAGCAAGCAGAGCGT
CAGTCGCGAAAAGGGCGGCGTTGAAAAGATCTCGTCGAGAGCTTTCCGAA
AATGTGGCGTTTGTGGTTAGAATCGTATTCGTTGCGGAGTAACCAAGCTT
TCAATATCGGTCCAGGGGGTGTCTTATCTTATGTCACCTACGGCACATAC
ATACCCGGCTTTCACGAGGCCGCAGGCAGGGTGCCCCTGGTAACGGGTAC
CGGTGGTGTTTATTTATGTTTTGATGATGAAATGAAGCGGCACCATGCTT
CGGCGGTGGAAAGCAGGGAAGCCAGGGGAAAGGCACAATCCGCATATATG
TATATCTATATAGCTGCCTGCTCAAAACCAGCGGCAGAGAGGATAGATAG
CCACAGCAGTGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
GCAGCAGCCGCAGCAGCTGCAGCTCTCCCTCAGGGTACCGCTCCAGCAAA
CACCTCTGGAGACCAACAGTAAATATCAAAGGACAACGTCCTTTTGTCCT
TTTGGTGACCAAGACCGCCGGGCAGCGCAACGTTCTTTTTGTTCTCTTTG
TTCTCCTCCCATTATTGCCTTATTTTTTCGTCGTCTGCCCCACTGGCCCC
CTTCCCCCACAACGGCTAGCTAGACGACCCAACCGGGATCACACAGCTGA
AGCGGTGTTGTTGCAATTCTAGTTTAAGGAGGCGCATAATTGTCCAAAAA
CGAGCTTCATTTTGGCCAGTGCTCGCCGCTGTGTGCATTTTTCCTGATTC
AAAAGGTTCCCGCCTGTACAAAAGCCCGGGTACACTCTTCTTCGGGGGCT
CCGCAGTTTTTATGCTCGTTTCGCCAAATATTACGTCACTGTATGTGATA
CCGATTGAAACCCATATCGAGCCCTTGCTCTAGCTAGTGTGGGTCAGGTT
CGTGTGGGTCAGGTTCATCTGATTCATTGATTATTATTTTTTAAATGAAG
CGAATCGATGCTCTGGTCGCGGAGTTGTACGGATTATTTGGGGTGACCGA
CAAAGTACGACGGGACCCCGCAGGCAACAATCAAGCTCGTACGAAGACAT
CCTCACCAAAAAGGCCGGCGCTCTGGAGGCCCCGCGCTGGCACCCCGCGC
CCGCCCTATGTATTCAGGAGCTCACATTCTCCATCCCGGACGAAATACAC
CACACACGACACGATATACTACTCATGACCAGCGTCGGTGCGGATTTCGG
ACCCTCAGTGGCGCTGTAAGAAGCGTCAAATCAGAGCTGCCTCCGGACAA
GCTTTAGGGGCTCGCCTAGACCGGCAGCAACAGACAGCAGCAGCTGTAGT
TAGTGTCCTGCATCACCATTTGCGGTGTTAGAGGGTGTCCCTGCACACTT
GAGACCCCACTCTTGCCATAGAGCGCGTAGCCTTGTCGTGGATCAAGAAC
TTCTGTTTCTGCGCCCACATCGCCCAAAATCGCGCACTACATACATACTG
ACTGTGTGTCTGCGAACTGGCTCTTTCCTCCCCTATCTATTCAGTACCAA
AGCTCGTGGCGGCCGAGAGTTGTGTCCTGCACAGATTGACGCCTATATAT
ATATATTTTTTTTTTTTTTTTGCCAACCACGCACCCAAAAACCAAACAAA
AAAAAAGACACGCACCCAAGGACCTTATCTACACATCCTCTTACCTACTT
CTGACTTGGATTAAGTCCACGTCGCTGAGCTTTCCGCTTCCGTGTCGCCT
TGCCACCCCAGCACACTGAAAACCAGAGTGTTTTTTTGGGGGGGATACGA
AAACGGGGGTACCCATCCCACCTGTGTGCCCCCCTCCCGCATATTTATGC
GCCTCCTTAGATTAGAAGTGCAGTGACACTGGAAGAGCATATACCGGTAC
TCTTCCTCTGATACCTCGATGGATTCCACCAACGACCCCCCCCCCCCCCC
CCATTAATTGGGGGCGCGGGGGGGGGGGGAAGGCGGAGGGGCACAAAAGC
CCCAGGGACAAACGAATTGTTTTGGCTGTCGTTGGTTTNNNNNNNNNNAA
GTGCAGTGACACGGGAACAGCATATACCGGTTCTCTTCCTCTGATACCTC
GATGGATTCCACCAACGCCCCCCCCCCCCCCATCATTAATTGGTGCCGCG
GAGGCGGTTGGACGGCGTTGGTGCACATAAGCCCGAGGTACATACGTATT
GTTGTTGCTGTCGTTGTCTTCACACATTAAAAAGCGTTCCGATCTCTCTT
TCCAGTACCTCCATGAGTCCGTGCTAGTCCAGCACTGGCGCGGTCGATTC
AATTCCCGTCGTCACAGGATAGGGAACTGGCCTTCTAAACGGGGTAAATG
TACCTAATAACGAAGAAAACAAGATTGACCGGGTAGGCCCTCCACAAAGC
ACTAAGAAACAAACAATATCAGACACGCAGAACAGGTTGTAACTTTCCCT
AAAAGGGCACAGGCTACTGAAAAATGAAAAAAATGAAATGGACCCGAAGG
GTACATAAAGACAAAAACCAAAGATCAAGATACACGATAGTCTGGAGCCT
CGCCGCTACATAAATACCCTCTACACGCTACATAACATACCGCGAGGTGA
AAACATTGTTAGGTACTACATGCGGCATGCATGCTTTTGAAGGGGGGAGG
GACGCCATGGTTTTGGACCCGGCCACGAGCCGCTCGCTGCTCGAAAAACG
CCTCCTGATAAAGGCAGGCAGTCCCAAGAGCAACAAAAATAAGCAAAACG
GCCGAGCAAAAATTGCCGTCGCACGGCGGTGCGGTACATTACAAGAGATC
CATTTCAGACAGGGTAAATGAAATGTAGCTTTCACCTTCACGCTGAGAAA
CGCCAATATCGCCACGAAGCCCCTCCCCCCCTACGTTCGCCACCGCGGTG
CCCCAACGTTGCTCCCCCCCCCCCCCCTCCCCTCTGGTCCTTCTTGTGTC
TCGTCGCCCCCGGGGTGCAGCAGAGGCAGCCGCAGCCAGCCCTCCTGGAC
GAGACAACATCTCGGAAATTTCCCAACTTTTTCCCCGGAAGTGTGGAAGG
GGGCGTTTTTGTCCGGTCGTGCTCGTCTTCGCCATCGACGGCGGCACAAG
GAAGGAATCGCGAAAAAATAGTCGGTGCTGGTAGTAGTCGTCGCAAGAGT
GGCGCTCTCGACCGAAACAGTTTGAAGCGTAGCAGCAGCAGCAGCAAGCA
GTTGTTGCAAACAGCAACGGGCAGTT ATGTCGGCGACGACGTCGTCATCA
CCGGCGCGGCTGTGGCTGCGAAACGAGGTTTTCGACGGGGTGTTGCCGCT
GCGAGCGACGGGGGTTCCGCTGTCGCCGGCGAGG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig967:22906..27539+
>mRNA_L-elsbetiae_contig967.18645.1 ID=mRNA_L-elsbetiae_contig967.18645.1|Name=mRNA_L-elsbetiae_contig967.18645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=216bp|location=Sequence derived from alignment at L-elsbetiae_contig967:22906..27539+ (Laminarionema elsbetiae ELsaHSoW15) ATGTCGGCGACGACGTCGTCATCACCGGCGCGGCTGTGGCTGCGAAACGA GGTTTTCGACGGGGTGTTGCCGCTGCGAGCGACGGGGGTTCCGCTGTCGC CGGCGAGGATGTCGGCGACGACGTCGTCATCACCGGCGCGGCTGTGGCTG CGAAACGAGGTTTTCGACGGGGTGTTGCCGCTGCGAGCGACGGGGGTTCC GCTGTCGCCGGCGAGG back to top