mRNA_L-elsbetiae_contig965.18629.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig965.18629.1
Unique NamemRNA_L-elsbetiae_contig965.18629.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 9.710e-35
Identity = 73/122 (59.84%), Postives = 86/122 (70.49%), Query Frame = -2
Query:   42 HSACHGRNEGLEAAADLLLRWGADETALDSDGDRPAALLDMEEEEDVD-NPATQNEIERTRLLLTGAPADRAWHRRGWLVMLRSRYSKAKVGRCTSD---DHGAGNEGGGFKVARSENIAGV 395
            H  C  R+EGLEAA D+LLRWGADET L+  G  PA  L     + +  NPA Q+EI+RTRLLL+ APADRAW RRGWLVMLRSR SKA+ G+C S    DHG G E GG ++ARSE +AG 
Sbjct:   23 HETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKAQEGKCRSSGGYDHGDGGEVGGSEMARSEGMAGA 144          
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.690e-22
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = -2
Query:   84 HSACHGRNEGLEAAADLLLRWGADETALDSDGDRPAALLDMEEEEDVDNPATQNEIERTRLLLTGAPADRAWHRRGWLVMLRSRYSKAKVGRCTSDDHGAGNEG 395
            H AC+ +++GLEA  DLLLRWGADETAL++ G  PA LLD  + E+     ++ EI R R+LL  APADRAW RR WLVMLRS    A+  + T+D+ G  +EG
Sbjct:  344 HVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSF---ARTAKATTDETGDAHEG 444          
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.450e-22
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = -2
Query:   84 HSACHGRNEGLEAAADLLLRWGADETALDSDGDRPAALLDMEEEEDVDNPATQNEIERTRLLLTGAPADRAWHRRGWLVMLRSRYSKAKVGRCTSDDHGAGNEG 395
            H AC+ +  G+EA  DLLLRWGADETALD+D   PA LLD ++ E+     ++ EIE+ RLL+  APA+RAW RR WLVMLRS    AK  R T++  G  +EG
Sbjct:  262 HWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSY---AKTARATTEATGDADEG 362          
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.320e-21
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = -2
Query:   84 HSACHGRNEGLEAAADLLLRWGADETALDSDGDRPAALLDMEEEEDVDNPATQNEIERTRLLLTGAPADRAWHRRGWLVMLRSRYSKAKVGRCTSDDHGAGNEG 395
            H AC+ ++ GLEA  DLLLRWGADETAL++DG  PA LLD  + E+     ++ EIER RLLL  APAD+A  RR WLVMLRS    A+  R T+D+ G  +EG
Sbjct:  558 HLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSF---ARTTRATTDETGDAHEG 658          
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.880e-19
Identity = 61/142 (42.96%), Postives = 75/142 (52.82%), Query Frame = -2
Query:  144 AIDALIKAGANVELKEGDGRTPLATAALNSRCKAIXXXXXXXXXXXXXXXXXXXXX-HSACHGRNEGLEAAADLLLRWGADETALDSDGDRPAALLDMEEEEDVDNP-ATQNEIERTRLLLTGAPADRAWHRRGWLVMLRSR 563
            A+  L+KA A+ ELK   G TPL  AA + R   +                      H AC  + EGL A+ DLLLRWGADETA +  G  P  +L        DNP  + +E++R RLLL  AP DR W RRGWLV+LRSR
Sbjct:  290 AVHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATR---TDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSR 428          
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.780e-18
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = -2
Query:   84 HSACHGRNEGLEAAADLLLRWGADETALDSDGDRPAALLDMEEEEDVDNPATQNEIERTRLLLTGAPADRAWHRRGWLVMLRSRYSKAKVGRCTSDDHGAGNEG 395
            H AC+ ++ G+EA  DLLL+WGADETA+ +DG+ PA  L +E   +     +  EI R RLLL  APA+RAW RR WLVMLRS    AK  R T+D  G  +EG
Sbjct:  285 HRACYRQDIGVEATVDLLLQWGADETAVHNDGNTPADWL-VENNNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSC---AKTARATTDKTGDADEG 384          
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.160e-17
Identity = 58/149 (38.93%), Postives = 75/149 (50.34%), Query Frame = -2
Query:  129 QAGAIDALIKAGANVELKEGDGRTPLATAA-LNSRCKAIXXXXXXXXXXXXXXXXXXXXXHSACHGRNEGLEAAADLLLRWGADETALDSDGDRPAALLDMEEEEDVDNPATQNEIERTRLLLTGAPADRAWHRRGWLVMLRSRYSKAK 572
            QAGA+D L+ AGA+++ K     TPL  A    +  +A+                     H AC     G +A  DLLLRWG  E  LD  G+ PAALL + E     +     E+ER  +LL  APADRAW RR WLVMLR+R  + +
Sbjct:  281 QAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDKTML--HLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAE---GSSSRKAREVERAHVLLANAPADRAWRRRSWLVMLRARTERER 424          
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.760e-16
Identity = 56/167 (33.53%), Postives = 80/167 (47.90%), Query Frame = -2
Query:  129 AIDALIKAGANVELKEGD---GRTPLATAALNSRCKAIXXXXXXXXXXXXXXXXXXXXXHSACHGRNEGLEAAADLLLRWGADETALDSDGDRPAALLDMEEEE------DVDNPATQ-------------NEIERTRLLLTGAPADRAWHRRGWLVMLRSRYSKAK 563
            A+D L+ AGA+V  K      G TPL+   +++ C+A+                     H  C   + G++   DLLLRWGA ETA++ +G  P+ +L +   E        D  AT+              EI+R R+LL  APADR W RR WLVMLR+R  + +
Sbjct:  288 AVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRARAERGR 454          
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Match: A0A6H5J7H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7H5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.490e-15
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = -2
Query:  105 HSACHGRNEGLEAAADLLLRWGADETALDSDGDRPAALLDMEEEEDVDNPATQNEIERTRLLLTGAPADRAWHRRGWLVMLRSRYSKAKVGRCTSDD 395
            H AC+ +++GLEA   LLLR GADETA++S  + PA LL   +++D     ++ EIER RLLL  AP +RAW  R WLVMLRS    AK GR ++D+
Sbjct:  114 HRACYWQHKGLEATVGLLLRSGADETAVNSADETPADLLGYLDDDDGKR-YSEAEIERVRLLLARAPTNRAWLGRCWLVMLRSC---AKTGRASTDE 206          
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.450e-15
Identity = 52/153 (33.99%), Postives = 75/153 (49.02%), Query Frame = -2
Query:  126 QAGAIDALIKAGANVELKEGDGR----TPLATAALNSRCKAIXXXXXXXXXXXXXXXXXXXXXHSACHGRNEGLEAAADLLLRWGADETALDSDGDRPAALLDMEEEEDVDNPATQNEIERTRLLLTGAPADRAWHRRGWLVMLRSRYSKAKV 572
            QA A++ L++AGA+ +++   G     TPL  AA +   +A+                     H A H +  G+    DLLLRWGA ETA++  G+ PA +        +  P    E     +LL  APADRAW RRGW+VMLR+R    ++
Sbjct:  214 QAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLA---IHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERI 363          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig965.18629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNI8_ECTSI9.710e-3559.84EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LS36_ECTSI1.690e-2252.88Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JRY1_9PHAE8.450e-2252.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW4_9PHAE1.320e-2154.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLL7_ECTSI1.880e-1942.96Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRZ8_ECTSI2.780e-1850.96Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LBP9_ECTSI1.160e-1738.93Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5K1F4_9PHAE6.760e-1633.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7H5_9PHAE1.490e-1550.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSI6_ECTSI5.450e-1533.99Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig965contigL-elsbetiae_contig965:9758..10330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size417
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.4856472-UTR-L-elsbetiae_contig965:9757..99131622817030.4856472-UTR-L-elsbetiae_contig965:9757..9913Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig965 9758..9913 +
1691683995.123125-UTR-L-elsbetiae_contig965:9757..99131691683995.123125-UTR-L-elsbetiae_contig965:9757..9913Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig965 9758..9913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817030.496945-CDS-L-elsbetiae_contig965:9913..103301622817030.496945-CDS-L-elsbetiae_contig965:9913..10330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig965 9914..10330 +
1691683995.132224-CDS-L-elsbetiae_contig965:9913..103301691683995.132224-CDS-L-elsbetiae_contig965:9913..10330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig965 9914..10330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig965.18629.1prot_L-elsbetiae_contig965.18629.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig965 9914..10330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig965.18629.1

>prot_L-elsbetiae_contig965.18629.1 ID=prot_L-elsbetiae_contig965.18629.1|Name=mRNA_L-elsbetiae_contig965.18629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MTSQPRRCHALSAGAPVSSRRVRSISFCVAGLSTSSSSSISSSAAGRSPS
LSKAVSSAPHRNSRSAAASSPSLRPWQAECSGVNPSPSGTSTFAPCCNSA
RIALHLLLSAAVARGVRPSPSLSSTLAPALMSASMAPA*
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mRNA from alignment at L-elsbetiae_contig965:9758..10330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig965.18629.1 ID=mRNA_L-elsbetiae_contig965.18629.1|Name=mRNA_L-elsbetiae_contig965.18629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=573bp|location=Sequence derived from alignment at L-elsbetiae_contig965:9758..10330+ (Laminarionema elsbetiae ELsaHSoW15)
CCATTCACACCGTTGCCTGCATTCCTAGGTCCGTCATTTCCAACACCCGC TATGTTCTCGCTCCTCGCTACCTTAAATCCCCCGCCCTCATTACCAGCGC CGTGGTCGTCAGAGGTGCATCTCCCCACCTTAGCTTTCGAGTAGCGCGAG CGGAGCATGACCAGCCAGCCCCGGCGATGCCACGCCCTGTCGGCCGGGGC CCCAGTCAGCAGCAGACGTGTGCGCTCGATCTCGTTTTGCGTCGCAGGAT TGTCGACATCTTCCTCCTCCTCCATATCAAGCAGTGCCGCGGGGCGATCA CCATCGCTGTCCAAGGCTGTTTCGTCTGCTCCCCATCGCAACAGCAGGTC CGCGGCCGCCTCCAGCCCTTCGTTACGCCCATGGCAAGCCGAGTGCAGTG GCGTTAATCCGAGTCCGTCTGGCACGTCAACCTTCGCTCCGTGCTGCAAT AGCGCACGGATTGCTTTGCATCTACTGTTAAGCGCAGCAGTTGCAAGAGG CGTACGCCCATCGCCCTCTTTGAGCTCGACGTTGGCTCCAGCCTTGATGA GCGCATCGATGGCACCCGCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig965:9758..10330+

>mRNA_L-elsbetiae_contig965.18629.1 ID=mRNA_L-elsbetiae_contig965.18629.1|Name=mRNA_L-elsbetiae_contig965.18629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig965:9758..10330+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCAGCCAGCCCCGGCGATGCCACGCCCTGTCGGCCGGGGCCCCAGT
CAGCAGCAGACGTGTGCGCTCGATCTCGTTTTGCGTCGCAGGATTGTCGA
CATCTTCCTCCTCCTCCATATCAAGCAGTGCCGCGGGGCGATCACCATCG
CTGTCCAAGGCTGTTTCGTCTGCTCCCCATCGCAACAGCAGGTCCGCGGC
CGCCTCCAGCCCTTCGTTACGCCCATGGCAAGCCGAGTGCAGTGGCGTTA
ATCCGAGTCCGTCTGGCACGTCAACCTTCGCTCCGTGCTGCAATAGCGCA
CGGATTGCTTTGCATCTACTGTTAAGCGCAGCAGTTGCAAGAGGCGTACG
CCCATCGCCCTCTTTGAGCTCGACGTTGGCTCCAGCCTTGATGAGCGCAT
CGATGGCACCCGCTTGAATGACCAGCCAGCCCCGGCGATGCCACGCCCTG
TCGGCCGGGGCCCCAGTCAGCAGCAGACGTGTGCGCTCGATCTCGTTTTG
CGTCGCAGGATTGTCGACATCTTCCTCCTCCTCCATATCAAGCAGTGCCG
CGGGGCGATCACCATCGCTGTCCAAGGCTGTTTCGTCTGCTCCCCATCGC
AACAGCAGGTCCGCGGCCGCCTCCAGCCCTTCGTTACGCCCATGGCAAGC
CGAGTGCAGTGGCGTTAATCCGAGTCCGTCTGGCACGTCAACCTTCGCTC
CGTGCTGCAATAGCGCACGGATTGCTTTGCATCTACTGTTAAGCGCAGCA
GTTGCAAGAGGCGTACGCCCATCGCCCTCTTTGAGCTCGACGTTGGCTCC
AGCCTTGATGAGCGCATCGATGGCACCCGCTTGA
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