mRNA_L-elsbetiae_contig963.18610.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig963.18610.1
Unique NamemRNA_L-elsbetiae_contig963.18610.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Match: A0A6H5KAD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD8_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 6.010e-78
Identity = 118/156 (75.64%), Postives = 138/156 (88.46%), Query Frame = 1
Query:   40 PWSNTGVARPGGRAARLLQDEPIRIYVPMCMRSWVMFACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRHTVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADMYAVTDADFTAEGTANILVN 507
            P S+T  ARPGGRAARLL DEPIRIYVPM MR W+M ACH++A CHLG+ARTL++LERFYWW+GMSV T++WVR C +CQARKSSR T RWP + +PLPSGPG+++SVDYFGPLP TPRG +YILLFTDRFSRRADMYAVT A+FTAEGTA++LVN
Sbjct:  301 PPSST-TARPGGRAARLLNDEPIRIYVPMLMRPWIMQACHADASCHLGAARTLSMLERFYWWVGMSVCTKWWVRHCLRCQARKSSRQTPRWPTLCLPLPSGPGVSVSVDYFGPLPLTPRGNTYILLFTDRFSRRADMYAVTAAEFTAEGTADVLVN 455          
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Match: A0A6H5KFR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR4_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 6.460e-77
Identity = 116/164 (70.73%), Postives = 136/164 (82.93%), Query Frame = 1
Query:   16 SLEKTTKTPWSNTGVARPGGRAARLLQDEPIRIYVPMCMRSWVMFACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRHTVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADMYAVTDADFTAEGTANILVN 507
            S ++   TP S T   RPGGRAARLL DEPIRIYVP+ MR W+M  CH++A CHLG+ARTL++LERFYWWIGMSV T++WVR C +CQARKSSR T RWP +S+PLPSGPG+++SVD+FGPLP TPRG +YILLFTDRFSR ADMYAVT  +F AEGTA ILVN
Sbjct:  235 SGDRAAATPSSMT--TRPGGRAARLLNDEPIRIYVPILMRPWMMQVCHADASCHLGAARTLSMLERFYWWIGMSVCTKWWVRHCLRCQARKSSRQTPRWPTMSLPLPSGPGVSVSVDHFGPLPLTPRGNTYILLFTDRFSRHADMYAVTAEEFIAEGTAEILVN 396          
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 4.500e-74
Identity = 117/165 (70.91%), Postives = 138/165 (83.64%), Query Frame = 1
Query:   13 LSLEKTTKTPWSNTGVARPGGRAARLLQDEPIRIYVPMCMRSWVMFACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRHTVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADMYAVTDADFTAEGTANILVN 507
            L + K T  P S     RPGGRAARLL DEPIRIYVPM MR W+M ACH++A CHLG+ARTL++LERFYWW+GMSV T++WVR C +CQARK+S  T RWP + +PLPSGPG+++SVDYFGPLP TPRG +YILLFTDRFSRRADMYAVT A+FTAEGTA++LVN
Sbjct:  814 LLVRKQTTPPLS--AATRPGGRAARLLNDEPIRIYVPMLMRPWIMQACHADASCHLGAARTLSMLERFYWWVGMSVCTKWWVRHCLRCQARKASHQTPRWPTLCLPLPSGPGVSVSVDYFGPLPLTPRGNTYILLFTDRFSRRADMYAVTAAEFTAEGTADVLVN 976          
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Match: A0A6H5JTW9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW9_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 3.270e-64
Identity = 98/150 (65.33%), Postives = 115/150 (76.67%), Query Frame = 1
Query:   58 VARPGGRAARLLQDEPIRIYVPMCMRSWVMFACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRHTVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADMYAVTDADFTAEGTANILVN 507
            V R GGR  RL      R+YVPM MR WV+ ACH++A  HLG  RT  LLERFYWWIG+  S R+W+R+C  CQARK+SR T RWPII++PLP GPG  + VD+FGPLP T +G SYILLFTDRFSRRADM+AVT A+FTA+GTANI VN
Sbjct:   59 VGRSGGRTTRLPNTGVPRVYVPMLMRRWVLRACHTHAFFHLGVHRTQRLLERFYWWIGVDRSVRWWLRSCLVCQARKTSRQTSRWPIIAMPLPQGPGTVVGVDFFGPLPLTAKGNSYILLFTDRFSRRADMFAVTAAEFTAKGTANIFVN 208          
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Match: A0A6H5KGR2_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGR2_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 7.540e-63
Identity = 98/150 (65.33%), Postives = 115/150 (76.67%), Query Frame = 1
Query:   58 VARPGGRAARLLQDEPIRIYVPMCMRSWVMFACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRHTVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADMYAVTDADFTAEGTANILVN 507
            V R GGR  RL      R+YVPM MR WV+ ACH++A  HLG  RT  LLERFYWWIG+  S R+W+R+C  CQARK+SR T RWPII++PLP GPG  + VD+FGPLP T +G SYILLFTDRFSRRADM+AVT A+FTA+GTANI VN
Sbjct:   59 VGRSGGRTTRLPNTGVPRVYVPMLMRPWVLRACHTHAFFHLGVHRTQRLLERFYWWIGVDRSVRWWLRSCLVCQARKTSRQTSRWPIIAMPLPQGPGTVVGVDFFGPLPLTAKGNSYILLFTDRFSRRADMFAVTAAEFTAKGTANIFVN 208          
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Match: A0A6H5KKB3_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB3_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 2.690e-62
Identity = 98/150 (65.33%), Postives = 115/150 (76.67%), Query Frame = 1
Query:   58 VARPGGRAARLLQDEPIRIYVPMCMRSWVMFACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRHTVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADMYAVTDADFTAEGTANILVN 507
            V R GGR  RL      R+YVPM MR WV+ ACH++A  HLG  RT  LLERFYWWIG+  S R+W+R+C  CQARK+SR T RWPII++PLP GPG  + VD+FGPLP T +G SYILLFTDRFSRRADM+AVT A+FTA+GTANI VN
Sbjct:  301 VGRSGGRTTRLPNTGVPRVYVPMLMRPWVLRACHTHAFFHLGVHRTQRLLERFYWWIGVDRSVRWWLRSCLVCQARKTSRQTARWPIIAMPLPQGPGTVVGVDFFGPLPLTAKGNSYILLFTDRFSRRADMFAVTAAEFTAKGTANIFVN 450          
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Match: A0A6H5KK47_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK47_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 3.290e-60
Identity = 90/133 (67.67%), Postives = 106/133 (79.70%), Query Frame = 1
Query:  109 RIYVPMCMRSWVMFACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRHTVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADMYAVTDADFTAEGTANILVN 507
            R+YVPM MR WV+ ACH+ A  HLG  RT  LLERFYWWIG+  S R+W+RAC  CQARK+SR T RWP+I++PLP GPG  + VD+FGPLP T +G SYILLFTDRFSRRADM+AVT A+FTA GTA+I VN
Sbjct:   15 RVYVPMLMRPWVLHACHTAASFHLGVHRTQRLLERFYWWIGLDRSVRWWLRACLVCQARKTSRQTARWPVIAMPLPQGPGTVVGVDFFGPLPVTAKGNSYILLFTDRFSRRADMFAVTAAEFTARGTAHIFVN 147          
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Match: A0A6H5K119_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K119_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 4.670e-60
Identity = 97/150 (64.67%), Postives = 114/150 (76.00%), Query Frame = 1
Query:   58 VARPGGRAARLLQDEPIRIYVPMCMRSWVMFACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRHTVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADMYAVTDADFTAEGTANILVN 507
            V R GGR  RL      R+YVPM MR WV+ ACH++A  HLG  RT  LLERFYWWIG+  S R+W+R+C  CQARK+SR T RWPII++PLP GPG  + VD+FGPLP T +G SYILLFTDRFSRRADM+AVT A+FTA+ TANI VN
Sbjct:  428 VGRSGGRTTRLPNTGVPRVYVPMLMRPWVLRACHTHAFFHLGVHRTQRLLERFYWWIGVDRSVRWWLRSCLVCQARKTSRQTARWPIIAMPLPQGPGTVVGVDFFGPLPLTAKGNSYILLFTDRFSRRADMFAVTAAEFTAKRTANIFVN 577          
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Match: A0A6H5K2S7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S7_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 8.750e-60
Identity = 97/150 (64.67%), Postives = 114/150 (76.00%), Query Frame = 1
Query:   58 VARPGGRAARLLQDEPIRIYVPMCMRSWVMFACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRHTVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADMYAVTDADFTAEGTANILVN 507
            V R GGR  RL  +   R+YVPM MR WV+ ACH++A  HLG  RT  LLERFYWWIGM  S R+W+R+C  CQARK+SR T RWPII++PLP GPG  + VD+FGPLP T +G SYILLFTDRFSRRADM+ V  A+FTA+GTANI VN
Sbjct:   59 VGRSGGRTTRLPNNGVPRVYVPMLMRPWVLRACHTHAFFHLGVHRTQRLLERFYWWIGMDRSVRWWLRSCLVCQARKTSRQTARWPIIAMPLPQGPGTVVGVDFFGPLPLTAKGNSYILLFTDRFSRRADMFHVIAAEFTAKGTANIFVN 208          
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Match: A0A6H5J9W8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W8_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 3.620e-59
Identity = 98/150 (65.33%), Postives = 115/150 (76.67%), Query Frame = 1
Query:   58 VARPGGRAARLLQDEPIRIYVPMCMRSWVMFACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRHTVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADMYAVTDADFTAEGTANILVN 507
            V R GGR  RL      R+YVPM MR WV+ ACH++A  HLG  RT  LLERFYWWIG+  S R+W+R+C  CQARK+SR T RWPII++PLP GPG  + VD+FGPLP T +G SYILLFTDRFSRRADM+AVT A+FTA+GTANI VN
Sbjct:  534 VGRSGGRTTRLPNTGVPRVYVPMLMRPWVLRACHTHAFFHLGVHRTQRLLERFYWWIGVDRSVRWWLRSCLVCQARKTSRQTARWPIIAMPLPQGPGTVVGVDFFGPLPLTAKGNSYILLFTDRFSRRADMFAVTAAEFTAKGTANIFVN 683          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig963.18610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAD8_9PHAE6.010e-7875.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFR4_9PHAE6.460e-7770.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUZ4_9PHAE4.500e-7470.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTW9_9PHAE3.270e-6465.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KGR2_9PHAE7.540e-6365.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKB3_9PHAE2.690e-6265.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KK47_9PHAE3.290e-6067.67Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K119_9PHAE4.670e-6064.67Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K2S7_9PHAE8.750e-6064.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J9W8_9PHAE3.620e-5965.33Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig963contigL-elsbetiae_contig963:29315..29821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog67593.Physo138661
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QBIP@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_005090.2
Exons1
Model size509
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817029.124202-CDS-L-elsbetiae_contig963:29314..298211622817029.124202-CDS-L-elsbetiae_contig963:29314..29821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig963 29315..29821 +
1691683994.0733938-CDS-L-elsbetiae_contig963:29314..298211691683994.0733938-CDS-L-elsbetiae_contig963:29314..29821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig963 29315..29821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig963.18610.1prot_L-elsbetiae_contig963.18610.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig963 29315..29821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig963.18610.1

>prot_L-elsbetiae_contig963.18610.1 ID=prot_L-elsbetiae_contig963.18610.1|Name=mRNA_L-elsbetiae_contig963.18610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
TVCDLSLEKTTKTPWSNTGVARPGGRAARLLQDEPIRIYVPMCMRSWVMF
ACHSNALCHLGSARTLALLERFYWWIGMSVSTRYWVRACQKCQARKSSRH
TVRWPIISIPLPSGPGLAISVDYFGPLPRTPRGYSYILLFTDRFSRRADM
YAVTDADFTAEGTANILVN
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mRNA from alignment at L-elsbetiae_contig963:29315..29821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig963.18610.1 ID=mRNA_L-elsbetiae_contig963.18610.1|Name=mRNA_L-elsbetiae_contig963.18610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=507bp|location=Sequence derived from alignment at L-elsbetiae_contig963:29315..29821+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGTGTGCGACTTGTCGCTCGAAAAAACCACCAAAACTCCTTGGTCAAA TACCGGGGTGGCGCGCCCAGGGGGGCGTGCTGCTCGTCTCCTGCAAGATG AACCCATACGCATTTATGTGCCCATGTGCATGCGTAGTTGGGTCATGTTC GCCTGCCATTCGAACGCTCTCTGCCATTTGGGATCGGCACGCACGCTTGC CCTGCTGGAACGATTCTACTGGTGGATCGGCATGAGCGTTTCTACACGCT ACTGGGTGCGCGCATGCCAGAAATGCCAAGCGCGCAAATCATCTCGACAT ACAGTGCGGTGGCCAATCATCTCTATACCGCTGCCGTCGGGACCAGGGTT AGCCATAAGCGTCGACTATTTTGGCCCCCTTCCGCGCACACCTCGCGGGT ACTCCTACATACTGCTGTTCACCGACCGCTTCAGTCGCCGAGCAGACATG TACGCCGTCACAGACGCCGACTTTACAGCGGAAGGGACAGCCAACATCCT CGTCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig963:29315..29821+

>mRNA_L-elsbetiae_contig963.18610.1 ID=mRNA_L-elsbetiae_contig963.18610.1|Name=mRNA_L-elsbetiae_contig963.18610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig963:29315..29821+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGTGTGCGACTTGTCGCTCGAAAAAACCACCAAAACTCCTTGGTCAAA
TACCGGGGTGGCGCGCCCAGGGGGGCGTGCTGCTCGTCTCCTGCAAGATG
AACCCATACGCATTTATGTGCCCATGTGCATGCGTAGTTGGGTCATGTTC
GCCTGCCATTCGAACGCTCTCTGCCATTTGGGATCGGCACGCACGCTTGC
CCTGCTGGAACGATTCTACTGGTGGATCGGCATGAGCGTTTCTACACGCT
ACTGGGTGCGCGCATGCCAGAAATGCCAAGCGCGCAAATCATCTCGACAT
ACAGTGCGGTGGCCAATCATCTCTATACCGCTGCCGTCGGGACCAGGGTT
AGCCATAAGCGTCGACTATTTTGGCCCCCTTCCGCGCACACCTCGCGGGT
ACTCCTACATACTGCTGTTCACCGACCGCTTCAGTCGCCGAGCAGACATG
TACGCCGTCACAGACGCCGACTTTACAGCGGAAGGGACAGCCAACATCCT
CGTCAACACGGTGTGCGACTTGTCGCTCGAAAAAACCACCAAAACTCCTT
GGTCAAATACCGGGGTGGCGCGCCCAGGGGGGCGTGCTGCTCGTCTCCTG
CAAGATGAACCCATACGCATTTATGTGCCCATGTGCATGCGTAGTTGGGT
CATGTTCGCCTGCCATTCGAACGCTCTCTGCCATTTGGGATCGGCACGCA
CGCTTGCCCTGCTGGAACGATTCTACTGGTGGATCGGCATGAGCGTTTCT
ACACGCTACTGGGTGCGCGCATGCCAGAAATGCCAAGCGCGCAAATCATC
TCGACATACAGTGCGGTGGCCAATCATCTCTATACCGCTGCCGTCGGGAC
CAGGGTTAGCCATAAGCGTCGACTATTTTGGCCCCCTTCCGCGCACACCT
CGCGGGTACTCCTACATACTGCTGTTCACCGACCGCTTCAGTCGCCGAGC
AGACATGTACGCCGTCACAGACGCCGACTTTACAGCGGAAGGGACAGCCA
ACATCCTCGTCAAC
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