mRNA_L-elsbetiae_contig9517.18500.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.470e-22 Identity = 46/65 (70.77%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 28 FTCDGIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIIDGKYIP 222 FTCDG+ KG YCC GC ECGGSGC RGGGLTG DCC SDI NLCS TGAAPCI+DG P Sbjct: 238 FTCDGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDIS---NLCSVTGAAPCIVDGDTSP 299
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 4.040e-21 Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1 Query: 28 FTCDGIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIID 207 FTCDGIQ+G +CC GCGECGG GC RG GL G+DCC SDI GN+CS TG APC+ID Sbjct: 632 FTCDGIQRGDFCCSAGCGECGGDGCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 4.360e-19 Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = 1 Query: 4 TPPTPTPDFTCDGIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIIDGK 213 T P+ +P FTCDGI GQ CC+ C CGG GC RGGGLTG+DCC+S+I G LCS G APC +DG+ Sbjct: 66 TSPSDSP-FTCDGILNGQACCRHECRSCGGVGCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVDGE 134
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: A0A6H5JIY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY0_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.720e-18 Identity = 41/77 (53.25%), Postives = 47/77 (61.04%), Query Frame = 1 Query: 25 DFTCDGIQKGQYCCK----------------DGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIID 207 DFTCDGIQ+G +CC GCGECGG GC RG GL G+DCC S+I GN+CS TG APC+ID Sbjct: 149 DFTCDGIQRGDFCCSVGGVFPYNERFLVGGWAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 225
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 1.110e-16 Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1 Query: 31 TCD----GIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIID-GKYIP 222 TCD G+ KG+YCC GCG CGGSGC +R GLTG+DCC S+I G LC+++GAAPCI D G +P Sbjct: 24 TCDNGLAGVSKGEYCCTLGCGTCGGSGCSSRAEGLTGDDCCTSNIASNGILCADSGAAPCIGDVGDDVP 92
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 3.040e-14 Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 1 Query: 1 PTPPTPTPDFTCDGIQKGQYCCKDGCGECGGSGCGTRG-GGLTGEDCCISDILRVGNLCSETGAAPCIIDGKYIP 222 P P FTCDG+++ +CC GC +CGGS C + GLTGEDCC + I G LCS T APC +DG P Sbjct: 2 PVPTATAGAFTCDGVERNNFCCSSGCRQCGGSNCSKQEQSGLTGEDCCQNRITASGRLCSVTREAPCYMDGGDSP 76
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12 Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1 Query: 28 FTCDGIQKGQYCCKDGCGECGGSGCGTRGG-GLTGEDCCISDILRVGNLCSETGAAPCIID 207 FTCDG+++ +CC GC +CGGS C + GLTGEDCC + I G LCS T APC +D Sbjct: 778 FTCDGVERNNFCCSSGCRQCGGSNCSKQEQIGLTGEDCCQNRITASGRLCSVTQEAPCYMD 838
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 1.700e-11 Identity = 35/65 (53.85%), Postives = 39/65 (60.00%), Query Frame = 1 Query: 25 DFTCD----GIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIID 207 D TC GIQ G CC CG CGGS C GGGL ++CC+SDI+ G LCS AAPC ID Sbjct: 1054 DETCSNGIPGIQTGNACCLAECGACGGSDCDEFGGGLGADNCCVSDIVEHGELCSIALAAPCYID 1118
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 8.080e-11 Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 1 Query: 40 GIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIID 207 GIQ CC CG CGGSGC GGGL ++CC+SDI+ G LCS APC ID Sbjct: 1089 GIQTDNACCLAECGACGGSGCDEFGGGLGADNCCVSDIVEYGELCSIALEAPCYID 1144
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 2.080e-10 Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 25 DFTCDG---IQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCII 204 +F+C G + G CC+ C CGGSGC +RG G CC S I G LCS++GAAPCI+ Sbjct: 199 EFSCSGDAGVSSGSSCCEADCDTCGGSGCSSRGSGAA--SCCTSSIQSAGTLCSDSGAAPCIL 259 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9517.18500.1 >prot_L-elsbetiae_contig9517.18500.1 ID=prot_L-elsbetiae_contig9517.18500.1|Name=mRNA_L-elsbetiae_contig9517.18500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp PTPPTPTPDFTCDGIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDback to top mRNA from alignment at L-elsbetiae_contig9517:2478..3150- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9517.18500.1 ID=mRNA_L-elsbetiae_contig9517.18500.1|Name=mRNA_L-elsbetiae_contig9517.18500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=673bp|location=Sequence derived from alignment at L-elsbetiae_contig9517:2478..3150- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9517:2478..3150- >mRNA_L-elsbetiae_contig9517.18500.1 ID=mRNA_L-elsbetiae_contig9517.18500.1|Name=mRNA_L-elsbetiae_contig9517.18500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig9517:2478..3150- (Laminarionema elsbetiae ELsaHSoW15)back to top |