mRNA_L-elsbetiae_contig9517.18500.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9517.18500.1
Unique NamemRNA_L-elsbetiae_contig9517.18500.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.470e-22
Identity = 46/65 (70.77%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   28 FTCDGIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIIDGKYIP 222
            FTCDG+ KG YCC  GC ECGGSGC  RGGGLTG DCC SDI    NLCS TGAAPCI+DG   P
Sbjct:  238 FTCDGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDIS---NLCSVTGAAPCIVDGDTSP 299          
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 4.040e-21
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   28 FTCDGIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIID 207
            FTCDGIQ+G +CC  GCGECGG GC  RG GL G+DCC SDI   GN+CS TG APC+ID
Sbjct:  632 FTCDGIQRGDFCCSAGCGECGGDGCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691          
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 4.360e-19
Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 TPPTPTPDFTCDGIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIIDGK 213
            T P+ +P FTCDGI  GQ CC+  C  CGG GC  RGGGLTG+DCC+S+I   G LCS  G APC +DG+
Sbjct:   66 TSPSDSP-FTCDGILNGQACCRHECRSCGGVGCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVDGE 134          
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: A0A6H5JIY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.720e-18
Identity = 41/77 (53.25%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   25 DFTCDGIQKGQYCCK----------------DGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIID 207
            DFTCDGIQ+G +CC                  GCGECGG GC  RG GL G+DCC S+I   GN+CS TG APC+ID
Sbjct:  149 DFTCDGIQRGDFCCSVGGVFPYNERFLVGGWAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 225          
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.110e-16
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   31 TCD----GIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIID-GKYIP 222
            TCD    G+ KG+YCC  GCG CGGSGC +R  GLTG+DCC S+I   G LC+++GAAPCI D G  +P
Sbjct:   24 TCDNGLAGVSKGEYCCTLGCGTCGGSGCSSRAEGLTGDDCCTSNIASNGILCADSGAAPCIGDVGDDVP 92          
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.040e-14
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 PTPPTPTPDFTCDGIQKGQYCCKDGCGECGGSGCGTRG-GGLTGEDCCISDILRVGNLCSETGAAPCIIDGKYIP 222
            P P      FTCDG+++  +CC  GC +CGGS C  +   GLTGEDCC + I   G LCS T  APC +DG   P
Sbjct:    2 PVPTATAGAFTCDGVERNNFCCSSGCRQCGGSNCSKQEQSGLTGEDCCQNRITASGRLCSVTREAPCYMDGGDSP 76          
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   28 FTCDGIQKGQYCCKDGCGECGGSGCGTRGG-GLTGEDCCISDILRVGNLCSETGAAPCIID 207
            FTCDG+++  +CC  GC +CGGS C  +   GLTGEDCC + I   G LCS T  APC +D
Sbjct:  778 FTCDGVERNNFCCSSGCRQCGGSNCSKQEQIGLTGEDCCQNRITASGRLCSVTQEAPCYMD 838          
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.700e-11
Identity = 35/65 (53.85%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   25 DFTCD----GIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIID 207
            D TC     GIQ G  CC   CG CGGS C   GGGL  ++CC+SDI+  G LCS   AAPC ID
Sbjct: 1054 DETCSNGIPGIQTGNACCLAECGACGGSDCDEFGGGLGADNCCVSDIVEHGELCSIALAAPCYID 1118          
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 8.080e-11
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   40 GIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCIID 207
            GIQ    CC   CG CGGSGC   GGGL  ++CC+SDI+  G LCS    APC ID
Sbjct: 1089 GIQTDNACCLAECGACGGSGCDEFGGGLGADNCCVSDIVEYGELCSIALEAPCYID 1144          
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.080e-10
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   25 DFTCDG---IQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISDILRVGNLCSETGAAPCII 204
            +F+C G   +  G  CC+  C  CGGSGC +RG G     CC S I   G LCS++GAAPCI+
Sbjct:  199 EFSCSGDAGVSSGSSCCEADCDTCGGSGCSSRGSGAA--SCCTSSIQSAGTLCSDSGAAPCIL 259          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9517.18500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FWE8_ECTSI2.470e-2270.77Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LJ42_ECTSI4.040e-2168.33FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FRL2_ECTSI4.360e-1958.57Endo alpha-1,4 polygalactosaminidase precusor n=1 ... [more]
A0A6H5JIY0_9PHAE1.720e-1853.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K646_9PHAE1.110e-1657.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEN4_9PHAE3.040e-1448.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL13_ECTSI1.010e-1252.46Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
D7FJ68_ECTSI1.700e-1153.85WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JG29_9PHAE8.080e-1155.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU45_9PHAE2.080e-1047.62WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9517contigL-elsbetiae_contig9517:2478..3150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue5.9e-11
Seed eggNOG ortholog2880.D8LL13
KEGG koko:K01180
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size227
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817018.8560116-CDS-L-elsbetiae_contig9517:2479..26351622817018.8560116-CDS-L-elsbetiae_contig9517:2479..2635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9517 2480..2635 -
1691683986.8155277-CDS-L-elsbetiae_contig9517:2479..26351691683986.8155277-CDS-L-elsbetiae_contig9517:2479..2635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9517 2480..2635 -
1622817018.8659697-CDS-L-elsbetiae_contig9517:3081..31501622817018.8659697-CDS-L-elsbetiae_contig9517:3081..3150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9517 3082..3150 -
1691683986.8283665-CDS-L-elsbetiae_contig9517:3081..31501691683986.8283665-CDS-L-elsbetiae_contig9517:3081..3150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9517 3082..3150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9517.18500.1prot_L-elsbetiae_contig9517.18500.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9517 2480..3150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9517.18500.1

>prot_L-elsbetiae_contig9517.18500.1 ID=prot_L-elsbetiae_contig9517.18500.1|Name=mRNA_L-elsbetiae_contig9517.18500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
PTPPTPTPDFTCDGIQKGQYCCKDGCGECGGSGCGTRGGGLTGEDCCISD
ILRVGNLCSETGAAPCIIDGKYIPY
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mRNA from alignment at L-elsbetiae_contig9517:2478..3150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9517.18500.1 ID=mRNA_L-elsbetiae_contig9517.18500.1|Name=mRNA_L-elsbetiae_contig9517.18500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=673bp|location=Sequence derived from alignment at L-elsbetiae_contig9517:2478..3150- (Laminarionema elsbetiae ELsaHSoW15)
CCCACTCCTCCGACGCCCACCCCCGATTTCACCTGCGACGGCATCCAGAA GGGCCAGTACTGCTGCAAGGTATGTTACGTAGCCAGACAATTTTTTAATT AGTGTATACTTAGTAGTATATATCTATAAACTCAGCAGTCTACATGCATA CGTCCAGTTTGTGAAAAAGTCGTTCCAGAGCCTCCCCCCTTTTCCCGTCC AAGCTATGTATATATATGTAGTCTACTGGCACAAAATCCGCGATTCATAT TGTTTACAACAACAGTTCGTTAGTGAAAACAATATTTCAGACTATTTATA CATGCACGTTGTTTGTAGCACAAGCGACTTGCGAACCCGGCTGTTGGCGG GCGTTACATCATCACAACAGGTGTTTCAGAGGATGGCTGGGGGGGGGTCT CGCCTGTCGAATGCCACGTCAATCAAGACTTCACCCCGAGTGGGTTGGTT GTGTCCTTCCTATTTAACAGCCTGTATTTTCCTCGTCTTCTTTCTTGTGA ATCTTGGCACCTCAGGATGGCTGTGGCGAGTGCGGAGGCTCGGGTTGCGG CACCCGCGGGGGAGGCCTGACGGGCGAAGACTGCTGCATCTCCGACATCC TGCGGGTCGGCAACCTCTGCTCTGAGACGGGAGCGGCTCCGTGCATCATC GACGGTAAATACATACCGTACCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9517:2478..3150-

>mRNA_L-elsbetiae_contig9517.18500.1 ID=mRNA_L-elsbetiae_contig9517.18500.1|Name=mRNA_L-elsbetiae_contig9517.18500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig9517:2478..3150- (Laminarionema elsbetiae ELsaHSoW15)
CCCACTCCTCCGACGCCCACCCCCGATTTCACCTGCGACGGCATCCAGAA
GGGCCAGTACTGCTGCAAGCCCACTCCTCCGACGCCCACCCCCGATTTCA
CCTGCGACGGCATCCAGAAGGGCCAGTACTGCTGCAAGGATGGCTGTGGC
GAGTGCGGAGGCTCGGGTTGCGGCACCCGCGGGGGAGGCCTGACGGGCGA
AGACTGCTGCATCTCCGACATCCTGCGGGTCGGCAACCTCTGCTCTGAGA
CGGGAGCGGCTCCGTGCATCATCGACGGTAAATACATACCGTACGATGGC
TGTGGCGAGTGCGGAGGCTCGGGTTGCGGCACCCGCGGGGGAGGCCTGAC
GGGCGAAGACTGCTGCATCTCCGACATCCTGCGGGTCGGCAACCTCTGCT
CTGAGACGGGAGCGGCTCCGTGCATCATCGACGGTAAATACATACCGTAC
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