mRNA_L-elsbetiae_contig9421.18416.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9421.18416.1
Unique NamemRNA_L-elsbetiae_contig9421.18416.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9421.18416.1 vs. uniprot
Match: A0A6H5LBA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.180e-15
Identity = 55/125 (44.00%), Postives = 70/125 (56.00%), Query Frame = 3 
Query:  453 TPLVGECGVLSGCTGSKPLTVITEAELDDLGSLHDVNLFVRLSALR-RGLWCRECHQSFIDALSTGAQQXXXXXXXXXXXXXXEQQHQETGRKRDFAEISEAATEHQPPLQQPQGQTT--LGHQL 818
            TP VG CG+++GC G K +T IT+ +L+ LGSL DV+LFV+LSALR  G+WC +CHQ   +A S   QQ              +Q   E+GRKRD AE          PL  P G T   +GH L
Sbjct:    4 TPAVGPCGLVAGCAGDKQVTFITQEQLNGLGSLRDVDLFVKLSALRVGGIWCEDCHQLLFNAASGSKQQ--------------QQLQPESGRKRDHAETMTHERPQPQPLVAPPGDTREPVGHGL 114
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9421.18416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBA6_9PHAE2.180e-1544.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9421contigL-elsbetiae_contig9421:2002..7088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-22_003550.1
Exons2
Model size895
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9421.18416.1prot_L-elsbetiae_contig9421.18416.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9421 2002..2460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817010.7230747-CDS-L-elsbetiae_contig9421:2001..24601622817010.7230747-CDS-L-elsbetiae_contig9421:2001..2460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9421 2002..2460 -
1691683980.8183563-CDS-L-elsbetiae_contig9421:2001..24601691683980.8183563-CDS-L-elsbetiae_contig9421:2001..2460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9421 2002..2460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817010.7350047-UTR-L-elsbetiae_contig9421:2460..24721622817010.7350047-UTR-L-elsbetiae_contig9421:2460..2472Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9421 2461..2472 -
1691683980.831274-UTR-L-elsbetiae_contig9421:2460..24721691683980.831274-UTR-L-elsbetiae_contig9421:2460..2472Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9421 2461..2472 -
1622817010.746417-UTR-L-elsbetiae_contig9421:6666..70881622817010.746417-UTR-L-elsbetiae_contig9421:6666..7088Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9421 6667..7088 -
1691683980.8440628-UTR-L-elsbetiae_contig9421:6666..70881691683980.8440628-UTR-L-elsbetiae_contig9421:6666..7088Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9421 6667..7088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9421.18416.1

>prot_L-elsbetiae_contig9421.18416.1 ID=prot_L-elsbetiae_contig9421.18416.1|Name=mRNA_L-elsbetiae_contig9421.18416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MAAAHTTPLVGECGVLSGCTGSKPLTVITEAELDDLGSLHDVNLFVRLSA
LRRGLWCRECHQSFIDALSTGAQQPPPPPLPPPPPPLSEQQHQETGRKRD
FAEISEAATEHQPPLQQPQGQTTLGHQLHQEQQQHAERQQPLDAAPPPAG
TEQ
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mRNA from alignment at L-elsbetiae_contig9421:2002..7088-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9421.18416.1 ID=mRNA_L-elsbetiae_contig9421.18416.1|Name=mRNA_L-elsbetiae_contig9421.18416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5087bp|location=Sequence derived from alignment at L-elsbetiae_contig9421:2002..7088- (Laminarionema elsbetiae ELsaHSoW15)
ACAACAACTCGACAACGAATGTCATCCCCCCCCCCTCTCTCCTGAAAATC
AACGTTCGGTGGGGGGAGGGGGGGGGGCTGCTTCCGGGCGGGTCGTCTCG
TGGTTCGGGCAAAGAGAAGGCTAAATCGCGCGACATCTTAGTCTATATAC
ACACCACGGCAAGGCTCAGGGCAAAAACGCCAGTTTGATTGGCACCGTAG
AGCTTTGGGGCGGTCGACAAAAGCAAGCAAAACAAGCAGTTGCGACCACC
GGGGTTTTCGAAGACCTGGAGCAAAAAACAACTTCTCTCTGTCTCCGATC
GAAGACCTGGAGCAAAACGTTTCCGCGAATATCCAACCCACAACAAAGAG
GGAGCGGCCTTGGAATCGGCCTTTGTGCCGCTGGCGGCTGCCTGACTCTA
CAGGCCACCTGGCAAAAGCGAGGTGAGATAGATGGAAAGGAAGCTGAGAT
GATGTATTTCAGCGTGCCTTTCGGTCAAGCGCGAGAGAGAGACAGATAGA
TGGCGAGAGGGCGTGTCCACACTGCACTGCTATATTGTGTCTGTGCTGCT
GACTGCAGCTACTACTACTGTAGCAGCTTCGGTGTGCGTCTCTAGCTCTC
TGGGGTCTTGTGGGAGACGAGCTCAAGACCCTACCCGTCTTACAGGTCGA
TTTTGGCACGGAATGCAACACCCTTTGAGCTTATTCACACCATATACGTT
ATCTGTCTGTGCGAAGGCACGAAGGCACGTCTCTGTAGCCCTAGATAGAC
GGTCTTCATTTACACATGATCATGCAGGCTCTCGTCCCTTGTCTCGCGCG
CGTATTTTCGCCGCAGATTGCCTGAAAACCTGATATACCTCGATTTATCC
GCAAATATGCCAGCATGCTGTAAATCATTTGTAGGGGAGAGAAAGGAGGG
GTCATTTCATTACTATGTAATCATGTAGATACAACAGCTACATGTATACA
GTAGACTATATACAGTAGACTATGTACGCAGCAGTACCACACGTGTTTCG
AGTCGTTTATTTATCCACCGCAGTACAAACATGAGCACAGAGTAGTGTTA
TGGGTGTGTCCGTATCTCAGCAACTACACGTCGGGTTGGTGCCACGGATG
GCTTGCATGATAGCTGTGGGCCATGTGAGCACAACACAAAAAATATTAAG
TAGATTGGACGCCTGTGGGCGGAGAAACGACCGGTGTCGTATTTCTTATT
GACGACACCGGTGTCGTAAGTAAATAGCAGTGCCGTATTTTATTTTGACT
CCCGATTTTCCGACTTTTTTTTGCTCCTTTTCGGCGTTATCGCCACTGAG
GGTGGGCCCTACGTAATTTTTGGAAAAGTCGAACATCGAACATCGAACAA
GCGGATAGTTCGATGTTCGACTTTTTGGGTCCTTTGCAGTTTCGGAAGAG
GCGAGCAAAAAACCCCACACCACACACACACACACACACACAACTGACCC
GCTGTCATATCGGTATTTGACAGCCCAAGAGAGTAGTTGACAGTCCTGTT
CACGTGTGGCGTCACACACCACAGCCACAAGCACGCCAGCGGGCCTTCAC
CCCAGAAAAATGCGATGGGGTATGGCCTGGTGTGGCTGTGCGCTGTGTGC
TGTCTGGCCGTAGTTGTAGGCATGGACCCCGGTGCTGAAGGAGAGGAGCA
AGAAGCAGGGATCAGTCGAAACCTCGCGGTCGCCCGACATAATAGACACT
TGTTTTGCGGTTATGCTCTTCGGTCGTCTCTCTCTCGGTCGCCCGGTCTC
CGTCTCTCTGTTGTCGTGTGATGATGTGTGTCAGAGGGAGCCGATAGACG
CGGGTCTTTTTTTTTTGTCACCAATAGACCACAGGACTGTAGGTTCGAGT
AAAGGTTTTAGAGTTTTTGTGAAAGATGTTAGAGTTTTAGGCGGAATCGC
CCCTGGAAGATCCGGCGTTAAAAAACTCGAACACCCTAACGTGGGATCGG
ACTCTTCGACCTTCTTGGCCAATCACATGATTACGCCGCTTGTTCGATGC
TCGATGTTGGAGTCCAAAAAAATTGCATAGGACCCACCCAGAGAAAGCCG
TGTTGGTGATGAGGAAGGAACCTGCCTGTAGCTGATGTACTTCTTGAGGG
TGTAGAAGAAATAATGAAGCGAATTGATGCTCCTGTCGCGAAGTATCGAC
GATTTTCACAGATAGCCAAGTCCGCACACTAAAAGACCCCCCCACCAAAA
GCCCCCGCCCTCTCAGGCATGCGTTGGCGCCAGTGCGCCAGCTCTAGGAG
CCCATATGCTCCATCCTGGCAGAAGAAAACGACAGCACATGCATCCTACT
CTCCTATATAGTGTCGAATCAGAGCTGCCTTCCGCCACGCGGTTGTGCGC
TCGGCCAGTCCAGCAGCAGCAGACGGCAGTAGCAAGAGTTAGTGCTGTGC
GCGGATGCTGGTGGCATGAAAGGGGTGCTCTGCATATCTTAGAACCCACT
CTTACCCCATACGTGTAGTCTCCTAAGGAATTAAAAAGCCCAGGTAGCGT
GAGAAATGGTGCTGAAATCTGCTGCAAATCTGTCTCTCTATGGCTCTCTC
CCTCGGCTCTCTCTCTCTCTCTCCTCTATCCACATTGTGCGATGCCAAGA
GTAAGGGCTGTGCTCCAATTACAAACAAAATTGTTGGCCACCTCTCTAGT
CACACGTCTCTTCTACACAGTCCCAACGTGGCCTGAGGGATTAGTTCCTA
GAAGCTGAGATATCTGCTTCTCCGTGTCGGGGTATTCGCAAGTCCTGTGT
TTGCCACGTCCCAGGATGTCCCGCCCTAAAAAATCATCGGCGAGTCAAAT
AACATTGTGAACCCGGCTGTTGTGAACCGGAGGTTCCGCATCCATGCATC
CATACCCTCATACCCGAATCACGCGCATAAATGAGTGCACATCAGTGTGT
GTACGATAGCTGTCTACATCTGTATCAGGGCGGCGTAACCACTGGCAGGG
TCTTGAATTTAGACCAAATTTCGTTGTCATGACCTTTGTCTGTGCTACTG
TGTAGCCACAAGTGTTATATCTACAAAGTTTTCTGCGGCTTTCGCCGCCA
CGAAAAGTGTGGGCGAGTCCCAAGATACATGAGAAAGTGGTGTGTTGACT
GCATTGCCCCGAAAGTATAATTTAAAAAAAGTATGAATGGGTCTGGCATC
CACTCTTATCAGTAAAGAAGTAAAGAGGGAGATTTGTCGGCGGCTTCGCC
GCCTCGGTGCGCGGGGCTGAAAGCAAGCTCGAATTGATGTGAGCACAGAC
AAGGGGAGGAGAGGTAGATATCCACGCGGGCAGACAGGGCAATGAGGACG
CAGAGAGAGTATATAAGAGGGCGACAGAGGAAGAGAGAGGCACAAAGAGC
GATCGAGCAACAGGACCGCAATGCCCTGGTGGCAGCTTGGATATTCCGAG
AACTTTTTCAAGTGCAACTCTGCCAAAAAGATTCCAATCGACGAAGAGAC
ACACGTACATACATATGTGTCTACGTGTCTACGTGAGCAGAGTCACAAAG
GGGAGGGCGGACAGATAGAGAAAGAACGGGAGAGAGAGAGAGAGAGAGAG
AGAGAAAGCGCCGGAGAGAAAGAGAGACAGAGATCAGAGAGACAGAGAGA
GAGACAGAGAGAGAGGAAGAGAGAGACTCGCCCTGACGAAACATTCTACA
GACTGACAAATCCAAAATCCAATAAGTCCGTCGCGAAGATAGAGCGAGCG
CACAACCAGGCAGGAAGGAGCCAAGCAAGCACGGAGAAGAGCGAAAACGG
ATAACATAAATCGAGATAGAGAGAGGGACAGAGGTAGAGAACCACAGACT
GGGAGCTGAGAGCGCAAACCCGATCGAAATGGCCATACAGCGCCAAAAAT
GCCAAATTGAAATATTTAAGAGCTCTCGCAGAGCACGACAGCGTTTTCAG
TGGCTCTCTAAAGACAAGTGAATAAGCCTGCTGCTCTCTGAAGAGCCCAC
AACACGCAGACATTCCGAGAATGGATACCATCCAGTGAAAATATAGTGCG
TATATATATATTTGCTAATAGACAAGACGTGCGCATCCTCCCACAAGATG
CTACGGAGAGCAGCAGCGGCAGTAAGCGTTGGACTCTACACGAATATACG
CAGCCCGCCCATGCCCATTCGCCGCTTTCGGCACACACGTAGCGTGCTGT
GCTTTCTGAGCTGCAATTGGGATCTCCTTGCGTGATAACCGGGACGAAGT
GCGAAAGCGTTATATATGTGCGCGCCCGATTCACACGACATGAAACCGTT
TCCTTTCCATCTGAGAAAATAAGACGTCAATCGCAGGCACTGATCAAGAC
TCGCTTGTTCCGAAACGCAAAAAAATGGCTCCCCGCCCCGTTGAGTCATC
CCCTCCCCGAACAGCCCCACGCGAAGCCCCCGTGATTCCTCCACCGCCCG
AAAAACCCCATGCAGAGGCCCCGTTAATCATCCCCTTCCAAAAAAATACA
TGCAAAAGGCCCCGTTAAGCTTTCCCCCCCCGCAACAATCCGATGTCGGG
GACCCGTTTTTCTTCCCCTCCCCCAACAACCCATACAAAAGGAAGGCCCC
GTAATTCATCCCCTCCCCTCCCCTCCTTTCCCCTCCCCTCCCCGAATAAA
CCTACCCCCCATGCAGAGAGACGGCGAGATGGCGGCGGCGCACACCACGC
CCCTGGTGGGCGAGTGCGGGGTCCTGTCCGGATGTACGGGAAGCAAGCCC
CTCACCGTCATCACCGAGGCGGAGCTGGACGACCTCGGCTCCTTGCACGA
CGTGAACCTGTTCGTGAGGCTGTCGGCGTTGCGGCGCGGGCTCTGGTGCC
GGGAATGCCACCAGTCGTTTATTGACGCCTTATCCACGGGCGCTCAACAG
CCGCCGCCGCCTCCACTGCCGCCGCCGCCGCCGCCTCTGTCGGAGCAGCA
GCATCAAGAGACCGGCCGCAAGCGAGATTTCGCGGAGATCTCCGAGGCGG
CGACGGAGCACCAGCCGCCGCTTCAGCAGCCGCAGGGCCAGACCACGCTA
GGACATCAATTGCACCAAGAACAGCAACAGCACGCTGAACGGCAGCAGCC
TCTCGACGCAGCCCCACCCCCGGCCGGCACCGAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9421:2002..7088-

>mRNA_L-elsbetiae_contig9421.18416.1 ID=mRNA_L-elsbetiae_contig9421.18416.1|Name=mRNA_L-elsbetiae_contig9421.18416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig9421:2002..7088- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCGGCGCACACCACGCCCCTGGTGGGCGAGTGCGGGGTCCTGTC
CGGATGTACGGGAAGCAAGCCCCTCACCGTCATCACCGAGGCGGAGCTGG
ACGACCTCGGCTCCTTGCACGACGTGAACCTGTTCGTGAGGCTGTCGGCG
TTGCGGCGCGGGCTCTGGTGCCGGGAATGCCACCAGTCGTTTATTGACGC
CTTATCCACGGGCGCTCAACAGCCGCCGCCGCCTCCACTGCCGCCGCCGC
CGCCGCCTCTGTCGGAGCAGCAGCATCAAGAGACCGGCCGCAAGCGAGAT
TTCGCGGAGATCTCCGAGGCGGCGACGGAGCACCAGCCGCCGCTTCAGCA
GCCGCAGGGCCAGACCACGCTAGGACATCAATTGCACCAAGAACAGCAAC
AGCACGCTGAACGGCAGCAGCCTCTCGACGCAGCCCCACCCCCGGCCGGC
ACCGAGCAGATGGCGGCGGCGCACACCACGCCCCTGGTGGGCGAGTGCGG
GGTCCTGTCCGGATGTACGGGAAGCAAGCCCCTCACCGTCATCACCGAGG
CGGAGCTGGACGACCTCGGCTCCTTGCACGACGTGAACCTGTTCGTGAGG
CTGTCGGCGTTGCGGCGCGGGCTCTGGTGCCGGGAATGCCACCAGTCGTT
TATTGACGCCTTATCCACGGGCGCTCAACAGCCGCCGCCGCCTCCACTGC
CGCCGCCGCCGCCGCCTCTGTCGGAGCAGCAGCATCAAGAGACCGGCCGC
AAGCGAGATTTCGCGGAGATCTCCGAGGCGGCGACGGAGCACCAGCCGCC
GCTTCAGCAGCCGCAGGGCCAGACCACGCTAGGACATCAATTGCACCAAG
AACAGCAACAGCACGCTGAACGGCAGCAGCCTCTCGACGCAGCCCCACCC
CCGGCCGGCACCGAGCAG
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