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Homology
BLAST of mRNA_L-elsbetiae_contig9420.18415.1 vs. uniprot
Match: A0A6H5J974_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J974_9PHAE) HSP 1 Score: 160 bits (404), Expect = 8.610e-44 Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 1
Query: 1 KGLSRSLIGGVTGMITTTDSLAQTQEALLATSRGLLEELRLHDTTRQADAIDGRADKIRETCAALERVSDRLSALRRRAEVLEAELEADGCVAGDGVSELRL 306
+G+ RSLIGGVT MI TTDSLAQTQ+ LLATSRGLLEELRLHDT RQADAI+ RADKIR+TCAALERV+DRL+ALRRRA+VLEAELEADGCVAGDGVS+L L
Sbjct: 10 QGIFRSLIGGVTDMIATTDSLAQTQDDLLATSRGLLEELRLHDTARQADAIETRADKIRQTCAALERVTDRLAALRRRAQVLEAELEADGCVAGDGVSDLCL 111
BLAST of mRNA_L-elsbetiae_contig9420.18415.1 vs. uniprot
Match: D7FMC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC6_ECTSI) HSP 1 Score: 158 bits (400), Expect = 3.960e-43 Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 1
Query: 1 KGLSRSLIGGVTGMITTTDSLAQTQEALLATSRGLLEELRLHDTTRQADAIDGRADKIRETCAALERVSDRLSALRRRAEVLEAELEADGCVAGDGVSELRL 306
+G+ RSLIGGVT MI TTD LA+TQ+ LLATSRGLLEELRLHDT RQADAI+ RADKIR+TCAALERV+DRL+ALRRRA+VLEAELEADGCVAGDGVSEL L
Sbjct: 16 EGIFRSLIGGVTDMIATTDRLARTQDDLLATSRGLLEELRLHDTARQADAIEARADKIRQTCAALERVTDRLAALRRRAQVLEAELEADGCVAGDGVSELCL 117
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-17_003470.1 |
| Exons | 3 |
| Model size | 1569 |
| Cds size | 270 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817010.6311314-UTR-L-elsbetiae_contig9420:3419..4679 | 1622817010.6311314-UTR-L-elsbetiae_contig9420:3419..4679 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9420 3420..4679 - |
| 1691683980.7540698-UTR-L-elsbetiae_contig9420:3419..4679 | 1691683980.7540698-UTR-L-elsbetiae_contig9420:3419..4679 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9420 3420..4679 - |
| 1622817010.6897056-UTR-L-elsbetiae_contig9420:6849..6888 | 1622817010.6897056-UTR-L-elsbetiae_contig9420:6849..6888 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9420 6850..6888 - |
| 1691683980.8031561-UTR-L-elsbetiae_contig9420:6849..6888 | 1691683980.8031561-UTR-L-elsbetiae_contig9420:6849..6888 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9420 6850..6888 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817010.643011-CDS-L-elsbetiae_contig9420:4679..4817 | 1622817010.643011-CDS-L-elsbetiae_contig9420:4679..4817 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9420 4680..4817 - |
| 1691683980.7638803-CDS-L-elsbetiae_contig9420:4679..4817 | 1691683980.7638803-CDS-L-elsbetiae_contig9420:4679..4817 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9420 4680..4817 - |
| 1622817010.661693-CDS-L-elsbetiae_contig9420:5940..5999 | 1622817010.661693-CDS-L-elsbetiae_contig9420:5940..5999 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9420 5941..5999 - |
| 1691683980.7734478-CDS-L-elsbetiae_contig9420:5940..5999 | 1691683980.7734478-CDS-L-elsbetiae_contig9420:5940..5999 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9420 5941..5999 - |
| 1622817010.6747308-CDS-L-elsbetiae_contig9420:6776..6849 | 1622817010.6747308-CDS-L-elsbetiae_contig9420:6776..6849 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9420 6777..6849 - |
| 1691683980.784642-CDS-L-elsbetiae_contig9420:6776..6849 | 1691683980.784642-CDS-L-elsbetiae_contig9420:6776..6849 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9420 6777..6849 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9420.18415.1 >prot_L-elsbetiae_contig9420.18415.1 ID=prot_L-elsbetiae_contig9420.18415.1|Name=mRNA_L-elsbetiae_contig9420.18415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MITTTDSLAQTQEALLATSRGLLEELRLHDTTRQADAIDGRADKIRETCA
ALERVSDRLSALRRRAEVLEAELEADGCVAGDGVSELRL* back to topmRNA from alignment at L-elsbetiae_contig9420:3420..6888- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig9420.18415.1 ID=mRNA_L-elsbetiae_contig9420.18415.1|Name=mRNA_L-elsbetiae_contig9420.18415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3469bp|location=Sequence derived from alignment at L-elsbetiae_contig9420:3420..6888- (Laminarionema elsbetiae ELsaHSoW15)
AAGGGCCTGTCTCGGAGCTTGATAGGAGGCGTGACCGGCATGATCACCAC
CACGGACAGCCTCGCCCAGACGCAAGAGGCTCTCTTGGCCACCAGCCGGG
GGCTTCTGGAAGGTGTGCACTCTGTAGGTGTTCTACGTACGTACCGCAGG
TGACATAAGATAAGACACCCCCTGGATCGATTTTCAAAGCTCAAGTACTC
CACAGCAAGCAGAGCGTCAGTCCCGAAAAGGGCGGCGTTGGAAAGATCTC
GTCGAGAGCTGTCCGAAAATGTGGCGTTTGTGGTTAGAATCGTATTCGTT
GCGGAGTAACCAAGCTTTCAATCTCGGTCCAGGGGGTGTATTATCTTATG
TCACCTACGGTACGCGCGTGTCCGCGTCTAAGTAGTAAGGAGAGCGGGGG
TGTGCCTTGTAGAGCGGGAGAGCAGGGATCAGTTTATTTTTTGGTGGTGT
TATCGTTTCACCATTTTCAGGAGGTCGGTTGTTTCTGGAAGCTTAGCATC
TACTGCTACTACTGTACCACGTTTATTGCTACGCGAGAGCCCGAGTGACA
GTGAAGGTGAACGAAGGACGCCGCCAATCGCCAACGGGCAGGTACATAGA
GCGACCCCTTTCACGATCTGCCGTCCGAGACGGCGATTTATCCTGTGTTT
GTTTTCTTCAAGAGATGACGACCGTGGCGGTAAAACCCACGAGCATGTAC
ATACAAAGCAAGCTGCATCTGCCCTGCCCTGCACAGCCCAGCCTGGCAAA
AGCACGCGAGCGCGGGACAGCGACAGCACGCTGACAACCCTAACCCCATT
CCGTGCGTGCGCCCCTGGCCTGGCCTCTACCCGCCCACCCCTTGCCGTTC
GCTCGTGATTTTTTCTCCGCCGGCGGGGTCCGCCCGAAGAGCTGAGGCTG
CACGACACCACCCGCCAGGCCGATGCCATCGACGGAAGGGCGGACAAGGT
GAGGCGCCAAGCATCGAGGCCAAAATGCTGGTATTTTTGTGTTACTGACA
TCTTGACACGGGCATAAAACGTACGTTTTGTTAGGGGTGCCGAGGAGGGC
GAAACCACAAGATTTTAGTTCGTGTCGTACATTACATATGTAGAAAGTAT
GTGTTTAGGCGTCGATATCGCGTTTCGTCAGGTCTTTTAGAGAAAGCGGG
CGGGGCCTTCTTGGCTGTTTGACCCAGCGGGAGAGGGGGAGGGAGAGATG
CGGCGTGCTGAGGAGAGCATTCGGCAGGAGAGTCTCTCGCGGTGGAAAAC
ATATGTGTCCCTGGGTGAGCGCCCGGTTGAGAGCGTAACGGGCTGCTGAT
GTTTTTGATCAAATATCTCGACAGACGACTAAGGGGGTCGCCGCAGGAGC
CAGGATGGGGGTGGGGGACGGGGAGAGTCCAGAGTCTCTCAGCATTTTGA
CCGTGAGACCACCAGGAGACTAGACGACCCTATTGTACCTGTAAGCCGTG
TCATGTCTGCGCGTGCCGGCATATGAGACTGCAAAGTAAACTGCAAAGTA
TTGGCACGAAGTGGGTCATAACACGCACAAAACAAAAAGGGTAAAGGTAC
GTACGTACGTATCGTGTACACTCGCCGGAGAGGAAAAGGGGAAAATAAGA
AGAGAGCGCGCACATTCTCAGGGCGGATGGAACGATTTATGTTTGTTTTT
CGGCGTTGAGGAACTTCGCTGGCCCCCGATTTTGTTTCGCGGGTGGGGCA
ACGGGTGCGGTAACTTGGTTGCCGCTTGTTGCCGTATCTTCTATAAACTT
CGTGTTCGCCGCGCTGCCTTGTGTTTCCTCTGGGCTGCGTGTACCGGTCG
ATCGAACGTTGATATTTACATTCTGCGGGGATGGCAATGCTCCCGTGCAG
AGCGAAGCGAAGGAATCTGCTTGCCACCTGATTGCCAGCCCATGCGCGAT
CCTGGAGACTATAACCTTCCTCCAACTACACCTTGGGGTGACGGCGGGAC
GGAAGGGTGCTTTGGTTTACACCAGCTCGCACCACCAAGATACCCTCCGT
GCAAGCGCCAGACGCCCATCTGTCACCTCACCCCCCCTCTGAACAACGGC
ACACCTCCCCCCCACAAACAGATTCGCGAGACCTGCGCGGCTCTGGAGAG
GGTGAGCGATCGCCTGTCGGCGTTGCGGCGTCGCGCGGAGGTGCTAGAGG
CGGAGCTTGAGGCGGACGGCTGCGTGGCCGGCGATGGCGTCTCGGAGCTG
CGCCTGTAGCTAGCGCCTTTGGTGCGGGACGGTTTCAAGAGCTCCTAAAC
AGTCTAAATCTGGTTGGCCGGGGCGAGCAAGCGGGTTCGCTTGATTGGTC
TACTGTAGGCTGGCACCGGGCGCGTTCGCAATGTTTGCGGCCTGTGTAAG
AACGGCGCCATCACTTATGAAGAACTTGGAGTAGGTAAGAACTTCGGGCT
CACTTTGGAATGCCCGGATAAGAGCCTCTGCACTGAAAACCTTACAAGAT
GGTGTCCCACCGAAAAACAAGAACCGAGCTTCGGGGCAAAACGAGAGGTT
CTGAAGTGGTGGTGCCATCTGTAACAACGGCGCAGCAGCTTTGTCTGCTC
CCAGAAATGGCGACGCGGGACCCATTACATCGGCCGAAGCAAGAGGGTTT
AAAGACTAACCTTTGGCTGATGGCGTGGCGAGCCGGTTGCGGCCCCAACT
AAGTCCGGAGTTGGGAGTTGACGAAGGCTTTTATTATGCATTTCTGATGT
ATGTTGTCTCTGCCGGCCGCAACCGTGAGGTGCTGGGCGGGAGAAGATCT
CGGAGGCGGGCGGTTTTGCGACTCGATTGGCCGATGGCCAAAGATGACGG
CAGCGTTTGTCTTTGGGAGGGTTTTCGTTTTGCCGACGTCGATCAGAGGT
TTGATGAGGCTGATCGAAACAGAGGCGGCGGGCACATCTGACCGATTGTG
TGTGTTTGTGAGTGTGTGTGTGTTTTATGTTTTATTTTGTTAAAATAGTA
CCGACGGTACTTAGCCGGCTGACCGCTGAAATTCGTCGGGGTCAGCTGGG
AAAAGTATCCGTCGGTGCTCTTGAGAGCAGTCTTCAGTATTTTAGGTAAA
ACAATTTACATACTGAATTTCCTTTGACGCTTGTAGAAGTATTTATGTAC
CACACCAGGGCAAAGGGGGGAGCTTTGGCGTGCGAGAGGGGGCAACGCAG
AGTTTTTTATTGGTTGAACAAATATGGTGGGATTTGACTGGCCGATCAAT
TGGAGCGAGCAGAGCAGCCCACAGGAGTACACTATTTAATAGGTCTTGTT
GTTGTCTCCGCACATAAGTTGGTGTGAATGTGACTGGTGGATTTGATGCT
TCGGGCCGAAACACCTGTGTGGCGTGTGTTTGAGTTTCCGAGCATCCCTT
GTTTTCTTGGACGGTAGCCTGTGTTCTCATCGGCGTCGACGCAGAGATCG
CGAAGCTGCGGAGGTCGCCAGAGCCAAAGGCGCCCAGTCGACCACTCTCC
CCGAGAAAAAGCAAGCCAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig9420:3420..6888- >mRNA_L-elsbetiae_contig9420.18415.1 ID=mRNA_L-elsbetiae_contig9420.18415.1|Name=mRNA_L-elsbetiae_contig9420.18415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig9420:3420..6888- (Laminarionema elsbetiae ELsaHSoW15)
ATGATCACCACCACGGACAGCCTCGCCCAGACGCAAGAGGCTCTCTTGGC
CACCAGCCGGGGGCTTCTGGAAGATGATCACCACCACGGACAGCCTCGCC
CAGACGCAAGAGGCTCTCTTGGCCACCAGCCGGGGGCTTCTGGAAGAGCT
GAGGCTGCACGACACCACCCGCCAGGCCGATGCCATCGACGGAAGGGCGG
ACAAGAGCTGAGGCTGCACGACACCACCCGCCAGGCCGATGCCATCGACG
GAAGGGCGGACAAGATTCGCGAGACCTGCGCGGCTCTGGAGAGGGTGAGC
GATCGCCTGTCGGCGTTGCGGCGTCGCGCGGAGGTGCTAGAGGCGGAGCT
TGAGGCGGACGGCTGCGTGGCCGGCGATGGCGTCTCGGAGCTGCGCCTGT
AGATTCGCGAGACCTGCGCGGCTCTGGAGAGGGTGAGCGATCGCCTGTCG
GCGTTGCGGCGTCGCGCGGAGGTGCTAGAGGCGGAGCTTGAGGCGGACGG
CTGCGTGGCCGGCGATGGCGTCTCGGAGCTGCGCCTGTAG back to top
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