mRNA_L-elsbetiae_contig9332.18333.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9332.18333.1
Unique NamemRNA_L-elsbetiae_contig9332.18333.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Match: Q8QNB7_ESV1K (EsV-1-168 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB7_ESV1K)

HSP 1 Score: 158 bits (400), Expect = 5.170e-47
Identity = 78/132 (59.09%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   10 QADLTYKNCEPFLPLKDGDRAKVLKVYDGDSLTLGWGDSSENHVRLACRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGRILANLEVDGDIDVSGYMLEDAEICHPYDGGKKVGW 405
            + +LTY+ CEPFLPL+DGD       YDGDS  L W D S    R+  RLLGVDTPE+RGSS  EKALALRAK RL   + G+ VTIR PG EKYGR L +L+ D    VS YM+ D +IC PYDGGKKV W
Sbjct:   34 EEELTYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWTDRSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVISGEFVTIRKPGNEKYGRALCDLQTDTLASVSEYMIADPDICRPYDGGKKVSW 165          
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Match: D8LPI6_ECTSI (EsV-1-168 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI6_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 6.430e-42
Identity = 72/130 (55.38%), Postives = 84/130 (64.62%), Query Frame = 1
Query:   16 DLTYKNCEPFLPLKDGDRAKVLKVYDGDSLTLGWGDSSENHVRLACRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGRILANLEVDGDIDVSGYMLEDAEICHPYDGGKKVGW 405
            +L Y+ CEPFLPL+DGD       YDGDS  L W D      R+  RL GVDTPE+ GSS  EK LALRAK RL   + G+ VTIR+PG EKYGR L +L+      VS YML D EIC PYDGG+K+ W
Sbjct:   31 ELAYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWIDGLGCKSRIMGRLAGVDTPEMNGSSDKEKVLALRAKQRLSDVIAGEFVTIRTPGNEKYGRALCDLQTAKLASVSDYMLADPEICRPYDGGRKLSW 160          
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Match: B5LWN7_9PHYC (Putative nuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWN7_9PHYC)

HSP 1 Score: 132 bits (331), Expect = 8.600e-37
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   19 LTYKNCEPFLPLKDGDRAKVLKVYDGDSLTLGWGDSSENHVRLACRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGRILANLEVDGDIDVSGYMLEDAEICHPYDGGKKVGWMS 411
            L ++ C  +LP+ +GD   V +VYDGD+ TL W D +   VR +CR+  +DTPE+RG S  E+ +A  AK+RL+S +L K VT+  P  +KYGRILA+L  +    VS YMLE  +IC  Y GGKK  W+S
Sbjct:   11 LCFRECVRYLPVHEGDIVFVCRVYDGDTCTLAWVDHAGRSVRSSCRIRDIDTPEMRGKSPEERKMASLAKERLQSAILEKFVTVWRPSSDKYGRILADLSTESIRSVSTYMLEMPDICKSYTGGKKTPWLS 141          
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Match: A0A835Z7E9_9STRA (FirrV-1-P2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.600e-36
Identity = 63/129 (48.84%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   19 LTYKNCEPFLPLKDGDRAKVLKVYDGDSLTLGWGDSSENHVRLACRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGRILANLEVDGDIDVSGYMLEDAEICHPYDGGKKVGW 405
            LTY++C+ FL L++GD+ K++KVYDGD++T  +  +    V+  CRL G+DTPEL  S  HEKALA++A+D L +  L K+VT++SP  EKYGRIL +LEVDG       M+   ++C+ YDGG K  W
Sbjct:    7 LTYESCKQFLALEEGDKVKIVKVYDGDTVTAAFIRNGIP-VKFQCRLEGIDTPELHSSEPHEKALAVKARDALSALTLNKVVTVKSPSLEKYGRILCDLEVDGKS-ACDEMMALHDVCYAYDGGSKKQW 133          
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Match: Q6XM34_9PHYC (FirrV-1-B2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM34_9PHYC)

HSP 1 Score: 121 bits (304), Expect = 8.410e-33
Identity = 56/127 (44.09%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    1 MDDQADLTYKNCEPFLPLKDGDRAKVLKVYDGDSLTLGWGDSSENHVRLACRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGRILANLEVDGDIDVSGYMLEDAEICHPY 381
            M DQ  L +++C P +PL+DG++A V KVYDGD+ TL W D     VR++CR+  +DTPE+R  +  E+  A++AK++L   VL + VT+++PGK+KYGR+LA++  D    V+ YML   ++C P+
Sbjct:    1 MTDQ--LKFEDCVPCMPLEDGEKAYVCKVYDGDTCTLAWIDHKGRKVRISCRIRDIDTPEMRSKATEERTRAVQAKEKLADVVLYREVTVKNPGKDKYGRLLADIATDKLESVAEYMLTFTDLCKPF 125          
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Match: A0A835YYA9_9STRA (Putative nuclease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA9_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.670e-31
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   19 LTYKNCEPFLPLKDGDRAKVLKVYDGDSLTLGWGDSSENHVRLACRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGRILANLEVDG-DIDVSGYMLEDAEICHPYDGGKKVGWMS 411
            +TY  C+ +LP  DGD AKV++V DGD++ L    S+    R+ CRL G+D  EL     HEKAL  +AK  L +    K+VT+ + G EKYGR+LA+L V+G ++ +S  ML+  ++CH YDGGKK  W++
Sbjct:   21 VTYDTCDKYLPAHDGDVAKVVRVIDGDTVHLAL-KSNGTFTRIVCRLHGIDAAELHSKDEHEKALGEKAKSILAAACDNKLVTLSNVGLEKYGRLLADLTVEGTNVTLSQVMLKVPDVCHAYDGGKKSPWLN 151          
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Match: A0A6C0IR71_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0IR71_9ZZZZ)

HSP 1 Score: 94.0 bits (232), Expect = 1.000e-21
Identity = 48/128 (37.50%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   19 LTYKNCEPFLPLKDGDRAKVLKVYDGDSLTLGWGDSSENHV-RLACRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGRILANLEVDGDIDVSGYMLEDAEICHPYDGGKKV 399
            +TY+   PF+P     + KV+KVYDGD++T+     +   V R + RL G+D+PE++G +  EK  A++++D L+  + G+IV ++    EKYGR+LA +    +++++ +MLE+  +  PYDGGKK+
Sbjct:   24 VTYEKSTPFIPPVT--KGKVVKVYDGDTITVASRIMNSKKVYRFSVRLNGIDSPEIKGKTVEEKTAAIKSRDALKDIIFGQIVVLKDVKTEKYGRLLATV-YHNNVNMNNWMLEN-NLAIPYDGGKKI 147          
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Match: A0A6C0FAZ2_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FAZ2_9ZZZZ)

HSP 1 Score: 93.2 bits (230), Expect = 2.100e-21
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   16 DLTYKNCEPFLP-LKDGDRAKVLKVYDGDSLTLGWGDSSENH--VRLACRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGRILANLEVDGDIDVSGYMLEDAEICHPYDGGKK---VGWM 408
            D  + NCEPF P +K G   KV+KVYDGDS+T+      EN+   R + RL G+DTPELR S+ +EKA A  A+D L  K+  KIV +++   EKYGR+LA++ + GD +++ +++        YDGG K     WM
Sbjct:   23 DSCWDNCEPFSPHVKIG---KVIKVYDGDSITIA-AKPYENYPIYRFSVRLNGIDTPELRTSNENEKAHAKIARDALHDKIYDKIVELKNVESEKYGRLLADIYL-GDENINEWLINQ-NFAVKYDGGTKEKPASWM 153          
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Match: A0A6C0HI73_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HI73_9ZZZZ)

HSP 1 Score: 93.2 bits (230), Expect = 2.450e-21
Identity = 52/134 (38.81%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    4 DDQADLTYKNCEPFLPLKDGDRAKVLKVYDGDSLTLG--WGDSSENHVRLACRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGRILANLEVDGDIDVSGYMLEDAEICHPYDGGKKV 399
            DD  +++Y N  PF+P       KV+KVYDGD++T+      S     R+A RL G+DTPE++G +  EK LA + +D L++K++ KIV +++   EKYGR+LA++ +DG + ++ +M+E       Y GG K+
Sbjct:   28 DDFTNISYDNTVPFVPPVT--YGKVIKVYDGDTITIAARLPYSKSAIYRIAVRLNGIDTPEIKGQTQKEKDLAKKIRDTLQTKLMNKIVQLKNTSSEKYGRLLADVYLDG-VCINEWMVEQGYAVR-YHGGTKI 157          
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Match: A0A6C0LVU8_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LVU8_9ZZZZ)

HSP 1 Score: 89.4 bits (220), Expect = 8.320e-20
Identity = 50/131 (38.17%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   16 DLTYKNCEPFLPLKDGDRAKVLKVYDGDSLTLG----WGDSSENHVRLACRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGRILANLEVDGDIDVSGYMLEDAEICHPYDGGKK 396
            ++ YK   PF+P   G   KV+KVYDGD++T+     W +S   + R + R+ G+D PE++G + +EK  A+ A++ ++  V GKIV + +   EKYGRILA++ ++G +++   +LE   +   YDGGKK
Sbjct:   29 EIKYKETIPFIPPVTG--GKVIKVYDGDTITIASKMPWDNSP--YYRFSVRINGIDCPEIKGKTENEKQCAILAREHVDHLVNGKIVHLENVSLEKYGRILADVFIEG-VNIGQSLLEK-RLAVSYDGGKK 153          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9332.18333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q8QNB7_ESV1K5.170e-4759.09EsV-1-168 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPI6_ECTSI6.430e-4255.38EsV-1-168 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
B5LWN7_9PHYC8.600e-3747.33Putative nuclease n=1 Tax=Feldmannia species virus... [more]
A0A835Z7E9_9STRA4.600e-3648.84FirrV-1-P2 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
Q6XM34_9PHYC8.410e-3344.09FirrV-1-B2 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A835YYA9_9STRA5.670e-3144.70Putative nuclease n=2 Tax=Tribonema minus TaxID=30... [more]
A0A6C0IR71_9ZZZZ1.000e-2137.50TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0FAZ2_9ZZZZ2.100e-2143.07TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0HI73_9ZZZZ2.450e-2138.81TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0LVU8_9ZZZZ8.320e-2038.17TNase-like domain-containing protein n=1 Tax=viral... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9332contigL-elsbetiae_contig9332:3244..3660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.4
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog349521.HCH_01990
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Staphylococcal nuclease homologue
EggNOG OGs1N0I9@1224,1S8DU@1236,1XQ4E@135619,COG1525@1,COG1525@2
COG Functional cat.L
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817003.0359275-CDS-L-elsbetiae_contig9332:3243..36601622817003.0359275-CDS-L-elsbetiae_contig9332:3243..3660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9332 3244..3660 +
1691683975.1970737-CDS-L-elsbetiae_contig9332:3243..36601691683975.1970737-CDS-L-elsbetiae_contig9332:3243..3660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9332 3244..3660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9332.18333.1prot_L-elsbetiae_contig9332.18333.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9332 3244..3660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9332.18333.1

>prot_L-elsbetiae_contig9332.18333.1 ID=prot_L-elsbetiae_contig9332.18333.1|Name=mRNA_L-elsbetiae_contig9332.18333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MDDQADLTYKNCEPFLPLKDGDRAKVLKVYDGDSLTLGWGDSSENHVRLA
CRLLGVDTPELRGSSAHEKALALRAKDRLESKVLGKIVTIRSPGKEKYGR
ILANLEVDGDIDVSGYMLEDAEICHPYDGGKKVGWMSA*
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mRNA from alignment at L-elsbetiae_contig9332:3244..3660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9332.18333.1 ID=mRNA_L-elsbetiae_contig9332.18333.1|Name=mRNA_L-elsbetiae_contig9332.18333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=417bp|location=Sequence derived from alignment at L-elsbetiae_contig9332:3244..3660+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGATCAAGCGGATCTGACATACAAGAACTGCGAGCCATTCTTGCC ACTGAAAGACGGTGACCGCGCCAAGGTGCTGAAAGTGTACGATGGCGATA GTCTAACCCTCGGCTGGGGGGACTCTAGTGAAAACCACGTCCGACTTGCC TGCCGTCTGCTCGGCGTAGATACACCGGAGCTGCGGGGATCGTCCGCCCA CGAGAAAGCTCTTGCTTTGAGAGCAAAAGATAGGCTGGAGTCTAAAGTCC TCGGAAAGATTGTCACGATTCGTTCTCCGGGCAAAGAGAAATATGGCAGA ATATTGGCCAATCTAGAAGTGGATGGTGACATCGACGTATCCGGGTACAT GCTGGAAGATGCCGAGATTTGTCATCCCTACGACGGGGGCAAAAAGGTGG GATGGATGTCGGCCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9332:3244..3660+

>mRNA_L-elsbetiae_contig9332.18333.1 ID=mRNA_L-elsbetiae_contig9332.18333.1|Name=mRNA_L-elsbetiae_contig9332.18333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig9332:3244..3660+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGATCAAGCGGATCTGACATACAAGAACTGCGAGCCATTCTTGCC
ACTGAAAGACGGTGACCGCGCCAAGGTGCTGAAAGTGTACGATGGCGATA
GTCTAACCCTCGGCTGGGGGGACTCTAGTGAAAACCACGTCCGACTTGCC
TGCCGTCTGCTCGGCGTAGATACACCGGAGCTGCGGGGATCGTCCGCCCA
CGAGAAAGCTCTTGCTTTGAGAGCAAAAGATAGGCTGGAGTCTAAAGTCC
TCGGAAAGATTGTCACGATTCGTTCTCCGGGCAAAGAGAAATATGGCAGA
ATATTGGCCAATCTAGAAGTGGATGGTGACATCGACGTATCCGGGTACAT
GCTGGAAGATGCCGAGATTTGTCATCCCTACGACGGGGGCAAAAAGGTGG
GATGGATGTCGGCCTAAATGGATGATCAAGCGGATCTGACATACAAGAAC
TGCGAGCCATTCTTGCCACTGAAAGACGGTGACCGCGCCAAGGTGCTGAA
AGTGTACGATGGCGATAGTCTAACCCTCGGCTGGGGGGACTCTAGTGAAA
ACCACGTCCGACTTGCCTGCCGTCTGCTCGGCGTAGATACACCGGAGCTG
CGGGGATCGTCCGCCCACGAGAAAGCTCTTGCTTTGAGAGCAAAAGATAG
GCTGGAGTCTAAAGTCCTCGGAAAGATTGTCACGATTCGTTCTCCGGGCA
AAGAGAAATATGGCAGAATATTGGCCAATCTAGAAGTGGATGGTGACATC
GACGTATCCGGGTACATGCTGGAAGATGCCGAGATTTGTCATCCCTACGA
CGGGGGCAAAAAGGTGGGATGGATGTCGGCCTAA
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