mRNA_L-elsbetiae_contig9319.18321.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9319.18321.1
Unique NamemRNA_L-elsbetiae_contig9319.18321.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Match: D7FZ40_ECTSI (Solute:Sodium symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ40_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 1.980e-94
Identity = 141/168 (83.93%), Postives = 153/168 (91.07%), Query Frame = 2
Query:    2 TLGNADLAYKFHYWDGAVLPMGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSFICLLAGNLAGLSVIIRFLFGGALPTSVFIAGFVTMVYTGAGGLLSVAYTDVAQASIGLVGLLIVAAWMLDNRETTHPPPSIGFPGYLYPNDDICEMYQ 505
            TLGNADLAYKFHYWDGAVLPMGLGLSL+INGLFIARHIN+A+ LTLPDFYGKAWGPAVE+LVSLLTC+SFICLLAGNL GLS+IIRFLFGG L TSVFIAG VTM+YTGAGGLLSVAYTDVAQAS+GL+GLL  +AWML NR   HP PSIGFPGYLYP+D  CE Y+
Sbjct:   38 TLGNADLAYKFHYWDGAVLPMGLGLSLVINGLFIARHINEAQCLTLPDFYGKAWGPAVEVLVSLLTCISFICLLAGNLVGLSIIIRFLFGGELATSVFIAGIVTMIYTGAGGLLSVAYTDVAQASLGLLGLLTTSAWMLSNRSPDHPSPSIGFPGYLYPDDATCEAYE 205          
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Match: A0A6H5KJW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW0_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 1.500e-92
Identity = 141/168 (83.93%), Postives = 153/168 (91.07%), Query Frame = 2
Query:    2 TLGNADLAYKFHYWDGAVLPMGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSFICLLAGNLAGLSVIIRFLFGGALPTSVFIAGFVTMVYTGAGGLLSVAYTDVAQASIGLVGLLIVAAWMLDNRETTHPPPSIGFPGYLYPNDDICEMYQ 505
            TLGNADLAYKFHYWDGAVLPMGLGLSL+INGLFIARHIN+A+ LTLPDFYGKAWGPAVE+LVSLLTC+SFICLLAGNL GLS+IIRFLFGG L TSVFIAG VTM+YTGAGGLLSVAYTDVAQAS+GL+GLL  +AWML NR   HP PSIGFPGYLYP+D  CE Y+
Sbjct:   84 TLGNADLAYKFHYWDGAVLPMGLGLSLVINGLFIARHINEAQCLTLPDFYGKAWGPAVEVLVSLLTCISFICLLAGNLVGLSIIIRFLFGGELATSVFIAGIVTMIYTGAGGLLSVAYTDVAQASLGLIGLLTTSAWMLSNRSPDHPGPSIGFPGYLYPDDATCEAYE 251          
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Match: D7FZ36_ECTSI (Solute:Sodium symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ36_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 1.890e-68
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 2
Query:    2 TLGNADLAYKFHYWDGAVLPMGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSFICLLAGNLAGLSVIIRFLFGGALPTSVFIAGFVTMVYTGAGGLLSVAYT 358
            TLGNADLAYKFHYWDGAVLPMGLGLSL+INGLFIARHIN+A+ LTLPDFYGKAWGPAVE+LVSLLTC+SFICLLAGNL GLS+IIRFLFGG L TSVFIAG VTM+YTGAGGLLSVAYT
Sbjct:   84 TLGNADLAYKFHYWDGAVLPMGLGLSLVINGLFIARHINEAQCLTLPDFYGKAWGPAVEVLVSLLTCISFICLLAGNLVGLSIIIRFLFGGELATSVFIAGIVTMIYTGAGGLLSVAYT 202          
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Match: A0A8J6CCI3_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCI3_DIALT)

HSP 1 Score: 205 bits (521), Expect = 6.060e-58
Identity = 99/178 (55.62%), Postives = 134/178 (75.28%), Query Frame = 2
Query:    5 LGNADLAYKFHYWDGAVLPMGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSFICLLAGNLAGLSVIIRFLFGGALPTSVFIAGFVTMVYTGAGGLLSVAYTDVAQASIGLVGLLIVAAWMLDNRETTHPPPSIGFPGYLYPNDDICEMYQVRLCMS-ALLC 535
            LGNADL+YKFH+WDGAVLP+GLGLSLIING+F+AR I++  VLTLP+ Y + +GP VE+ VS + C SFI LLAGNL G++ ++ +L G    T+VF++G V  VYT +GGL SVA+TDV Q++IG++G L+ A W + N     PPPSIGFPGY+YP++  C++Y+   C + A LC
Sbjct:  123 LGNADLSYKFHFWDGAVLPIGLGLSLIINGVFLARFIHRENVLTLPEIYARYYGPVVEVCVSFVCCASFISLLAGNLVGMAAVLGYLGGIDQTTAVFVSGTVLFVYTVSGGLFSVAFTDVVQSTIGIIGALVTAFWFIQNAPAA-PPPSIGFPGYVYPDEATCKLYEGVPCSADADLC 299          
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Match: C1E525_MICCC (Solute:Sodium symporter family n=2 Tax=Micromonas TaxID=38832 RepID=C1E525_MICCC)

HSP 1 Score: 196 bits (497), Expect = 2.500e-54
Identity = 96/185 (51.89%), Postives = 129/185 (69.73%), Query Frame = 2
Query:    5 LGNADLAYKFHYWDGAVLPMGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSFICLLAGNLAGLSVIIRFLFGGALPTSVFIAGFVTMVYTGAGGLLSVAYTDVAQASIGLVGLLIVAAWMLDNRETTHPPPSIGFPG-------------------YLYPNDDICEMY 502
            LGNADL+YK+H++DGAVLP+GLGLSLI+NG+F+A  +N+  VLTLPD YGK +G AVEI+ S+ TC SF+CLLAGNL G+SVI+ ++F  +   +VF++G + + YT  GGL SVAYTDV QA+IG++G L VA W+++N +   PPPSIG P                    Y+YP+D    MY
Sbjct:  128 LGNADLSYKYHFYDGAVLPIGLGLSLILNGIFLAHKVNEELVLTLPDIYGKKYGKAVEIVTSICTCCSFLCLLAGNLVGMSVILAYIFDISEVGAVFLSGIICLAYTACGGLFSVAYTDVVQAAIGMIGCLSVAYWLINNAKEEAPPPSIGMPKTAAYTTVTSGTVANQDIGFYVYPDDATAAMY 312          
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Match: A0A835YRZ9_9STRA (Solute:Sodium symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ9_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.630e-54
Identity = 95/168 (56.55%), Postives = 122/168 (72.62%), Query Frame = 2
Query:    2 TLGNADLAYKFHYWDGAVLPMGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSFICLLAGNLAGLSVIIRFLFGGALPTS-VFIAGFVTMVYTGAGGLLSVAYTDVAQASIGLVGLLIVAAWMLDNRETTHPPPSIGFPGYLYPNDDICEMY 502
            TLGNADLAYKF ++DGA LP+GLG+SLI+NGL +ARH+N A  LTLPDFY + +G   E+LVSL+ C SFI LLAGNL GL  I++F FGG      V++A  +   YT  GGL+SV Y DV QA  G+ GL++ +A+ML N    +PP S+GFPGY+YP+  +CEMY
Sbjct:   98 TLGNADLAYKFAWFDGAALPIGLGVSLILNGLLLARHVNNACCLTLPDFYARKYGKLFEVLVSLVLCTSFISLLAGNLVGLGRILQFCFGGISKAGGVWVAAALCASYTIGGGLVSVVYADVVQALTGVTGLIVFSAYMLSNYSQQYPPASVGFPGYIYPDQQVCEMY 265          
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Match: K8FEG1_9CHLO (Solute:Sodium symporter family n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FEG1_9CHLO)

HSP 1 Score: 193 bits (491), Expect = 1.730e-53
Identity = 91/166 (54.82%), Postives = 122/166 (73.49%), Query Frame = 2
Query:    5 LGNADLAYKFHYWDGAVLPMGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSFICLLAGNLAGLSVIIRFLFGGALPTSVFIAGFVTMVYTGAGGLLSVAYTDVAQASIGLVGLLIVAAWMLDNRETTHPPPSIGFPGYLYPNDDICEMY 502
            LGNADL+YKF ++DGAVLP+GLGLSLI+N LF A+ +N   VLTLPD YGK +G A EI+ SL+ C SF+CLLAGNL G++ I+ +LF   +   VF++G + +VYT  GGL SVAYTDV Q+++G+ G L    W++ N E   PPPSIGFP Y+YP++   ++Y
Sbjct:  147 LGNADLSYKFAFFDGAVLPIGLGLSLILNALFFAKKMNAEGVLTLPDVYGKRYGVATEIIASLVLCCSFLCLLAGNLVGMAKILAYLFDLDITDGVFLSGIIILVYTACGGLFSVAYTDVIQSAVGMTGCLAAVYWIIKNAEFEAPPPSIGFPDYVYPDEATAKLY 312          
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Match: A0A7S2VEF1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEF1_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.530e-51
Identity = 94/176 (53.41%), Postives = 123/176 (69.89%), Query Frame = 2
Query:    5 LGNADLAYKFHYWDGAVLPMGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSFICLLAGNLAGLSVIIRFLFGGALPTSVFIAGFVTMVYTGAGGLLSVAYTDVAQASIGLVGLLIVAAWMLDNRETTHPPPSIGFPGYLYPND----DICEMYQVRLCM 520
            LGNADL+YK+H++DGAV+P+GLG+SL+ING+F+A HIN   VLTLPD + K +G  VE+LVSL T  SFI LLAGNL G   I  +L+  +   +++IA  V  +YT  GGL SVAYTDV Q  IG  G +++A W + N ET  PPPSIGFPGY+YP++      C+MY    C+
Sbjct:  124 LGNADLSYKYHFYDGAVIPIGLGMSLLINGIFLAHHINNEEVLTLPDIFAKRYGKTVEVLVSLCTVCSFIMLLAGNLVGFGAITSYLWDISEEAAIWIAAIVIWMYTATGGLFSVAYTDVVQGVIGWSGCVVMAFWFIAN-ETEAPPPSIGFPGYIYPDNIGDGGTCDMYNGTACV 298          
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Match: A0A7S3K6Q6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6Q6_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.110e-50
Identity = 90/170 (52.94%), Postives = 121/170 (71.18%), Query Frame = 2
Query:    2 TLGNADLAYKFHYWDGAVLPMGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSFICLLAGNLAGLSVIIRFLFGGALPTSVFIAGFVTMVYTGAGGLLSVAYTDVAQASIGLVGLLIVAAWMLDNRETTHPPPSIGFPGYLYPN---DDICEMY 502
             LGNADL+YK+H+WDGA LP+GLGLSLI+NGLF+ARH+N+A +LTLPD + + +G A E++   +  VSF  LLAGNL G   I+ FLFG +L   + I+G +  +YT  GG+LSVAY+D+AQ+++G+ GL  VA W   N     PP SIGFPGY+YP+   D +C  Y
Sbjct:  124 VLGNADLSYKYHFWDGACLPLGLGLSLILNGLFLARHMNRAGLLTLPDLWARKYGKAAEVIGGSVCIVSFCALLAGNLVGCGTILAFLFGVSLKEGILISGILMFLYTVCGGILSVAYSDIAQSTLGISGLA-VAGWWCFNHGHKAPPDSIGFPGYIYPDSFGDRVCSKY 292          
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Match: B7GCN8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GCN8_PHATC)

HSP 1 Score: 184 bits (466), Expect = 8.340e-50
Identity = 92/187 (49.20%), Postives = 128/187 (68.45%), Query Frame = 2
Query:    5 LGNADLAYKFHYWDGAVLPMGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSFICLLAGNLAGLSVIIRFLFGGALPTSVFIAGFVTMVYTGAGGLLSVAYTDVAQASIGLVGLLIVAAWMLDNRETTHPPPSIGFPGYLYPND----DICEMYQ-VRLCMSALLCARRVK 550
            LGNADL+YKF ++DGAV+P+GLGLSLI+NG+F+A H+N   VLTLPD + K +G  VEILVSL T  SF+ LLAGNL G   I  +++G +   +++IA  +  VYT +GGL SVAYTDV Q  +G  G +++A W + N E   PPPSIG+P Y+YP++     +C+MY  V   ++A  C   ++
Sbjct:  142 LGNADLSYKFGFYDGAVIPIGLGLSLILNGIFLAHHVNNDEVLTLPDIFAKRYGKVVEILVSLTTICSFLMLLAGNLVGFGAITSYVWGISDTAAIWIAAGIVWVYTASGGLFSVAYTDVVQGLMGWSGCIVMAFWFIANEEPNAPPPSIGYPLYVYPDNIGDGGVCDMYDGVPCAVTADACCYNIE 328          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9319.18321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ40_ECTSI1.980e-9483.93Solute:Sodium symporter family n=1 Tax=Ectocarpus ... [more]
A0A6H5KJW0_9PHAE1.500e-9283.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ36_ECTSI1.890e-6889.92Solute:Sodium symporter family n=1 Tax=Ectocarpus ... [more]
A0A8J6CCI3_DIALT6.060e-5855.62Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
C1E525_MICCC2.500e-5451.89Solute:Sodium symporter family n=2 Tax=Micromonas ... [more]
A0A835YRZ9_9STRA3.630e-5456.55Solute:Sodium symporter family n=1 Tax=Tribonema m... [more]
K8FEG1_9CHLO1.730e-5354.82Solute:Sodium symporter family n=1 Tax=Bathycoccus... [more]
A0A7S2VEF1_9STRA1.530e-5153.41Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3K6Q6_9STRA2.110e-5052.94Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B7GCN8_PHATC8.340e-5049.20Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9319contigL-elsbetiae_contig9319:4287..6587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.4
Seed ortholog evalue2.3e-63
Seed eggNOG ortholog2880.D7FZ40
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.choline:sodium symporter activity
EggNOG OGsCOG0591@1,KOG3761@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size791
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817001.8595502-UTR-L-elsbetiae_contig9319:4286..43221622817001.8595502-UTR-L-elsbetiae_contig9319:4286..4322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9319 4287..4322 +
1691683974.3150806-UTR-L-elsbetiae_contig9319:4286..43221691683974.3150806-UTR-L-elsbetiae_contig9319:4286..4322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9319 4287..4322 +
1622817001.8771482-UTR-L-elsbetiae_contig9319:4706..47311622817001.8771482-UTR-L-elsbetiae_contig9319:4706..4731Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9319 4707..4731 +
1691683974.3261437-UTR-L-elsbetiae_contig9319:4706..47311691683974.3261437-UTR-L-elsbetiae_contig9319:4706..4731Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9319 4707..4731 +
1622817001.952874-UTR-L-elsbetiae_contig9319:6355..65871622817001.952874-UTR-L-elsbetiae_contig9319:6355..6587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9319 6356..6587 +
1691683974.3830352-UTR-L-elsbetiae_contig9319:6355..65871691683974.3830352-UTR-L-elsbetiae_contig9319:6355..6587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9319 6356..6587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817001.8944168-CDS-L-elsbetiae_contig9319:4731..47911622817001.8944168-CDS-L-elsbetiae_contig9319:4731..4791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9319 4732..4791 +
1691683974.3380716-CDS-L-elsbetiae_contig9319:4731..47911691683974.3380716-CDS-L-elsbetiae_contig9319:4731..4791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9319 4732..4791 +
1622817001.909063-CDS-L-elsbetiae_contig9319:5388..55021622817001.909063-CDS-L-elsbetiae_contig9319:5388..5502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9319 5389..5502 +
1691683974.351158-CDS-L-elsbetiae_contig9319:5388..55021691683974.351158-CDS-L-elsbetiae_contig9319:5388..5502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9319 5389..5502 +
1622817001.9284518-CDS-L-elsbetiae_contig9319:5682..58061622817001.9284518-CDS-L-elsbetiae_contig9319:5682..5806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9319 5683..5806 +
1691683974.3607578-CDS-L-elsbetiae_contig9319:5682..58061691683974.3607578-CDS-L-elsbetiae_contig9319:5682..5806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9319 5683..5806 +
1622817001.9410007-CDS-L-elsbetiae_contig9319:6155..63551622817001.9410007-CDS-L-elsbetiae_contig9319:6155..6355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9319 6156..6355 +
1691683974.373427-CDS-L-elsbetiae_contig9319:6155..63551691683974.373427-CDS-L-elsbetiae_contig9319:6155..6355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9319 6156..6355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9319.18321.1prot_L-elsbetiae_contig9319.18321.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9319 4732..6355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9319.18321.1

>prot_L-elsbetiae_contig9319.18321.1 ID=prot_L-elsbetiae_contig9319.18321.1|Name=mRNA_L-elsbetiae_contig9319.18321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MGLGLSLIINGLFIARHINKARVLTLPDFYGKAWGPAVEILVSLLTCVSF
ICLLAGNLAGLSVIIRFLFGGALPTSVFIAGFVTMVYTGAGGLLSVAYTD
VAQASIGLVGLLIVAAWMLDNRETTHPPPSIGFPGYLYPNDDICEMYQVR
LCMSALLCARRVKSS*
back to top

mRNA from alignment at L-elsbetiae_contig9319:4287..6587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9319.18321.1 ID=mRNA_L-elsbetiae_contig9319.18321.1|Name=mRNA_L-elsbetiae_contig9319.18321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2301bp|location=Sequence derived from alignment at L-elsbetiae_contig9319:4287..6587+ (Laminarionema elsbetiae ELsaHSoW15)
CACGCTCGGAAATGCCGACCTCGCCTACAAGTTCCAGTGAGCAAGTAGAT ACCACACAATTGTTCTCTGCCTCGGTTGAGTTGTCTGAGCCTATGGTAGT TACCACTCGCCCTGTACTGCGTACCCCGCTTAGTCTGCTGGGAATCTTGA TGTTGCTTGACGCGTAGTGGGAACTGCAGGTTGGGTGTCGAAGCGGCACT CCGATGAGCGAAAGAGGGGTGGTTTTTTGTGACTCGAGAAACCGCCGTGT TTCGCGTATTGCCAAGGGCACGATAGACGAGACTTTTTAGTTCGGAAATA TCGGTTTTGACTCGATGTGTTCGCGCGTATGGTATATACATGTTATGCGA ATCGATATCGATCTCAATCTCGGTCTTGTCCGCCCCGCTTGACTCGTGCG TTGCCTGTGGTATCATGCAGCTACTGGGACGGAGCTGTCCTCCCGATGGG GCTCGGCCTCAGCCTCATTATCAACGGCCTGTTCATCGCTCGCCACATCA ACAAGGTGAGGCGCGCACGCGCGCTTTGGCAACCCATCCCTTGTTCGAGG AGTTTGCAGTTCATCAACAGCATGACGGTGTTACGGTGGCGTGTCGCATC ACATTGAAACGCGAGATGGATGCGCACTATGTATTGAGAATGTCGGCCAA CTCGTGGAAGCGGCGCCCCCCGTTGAGGTGACGGCACACACACACCGCTT TGCTGTAACTCTCGAGAACCGCCGTCTGCTGTGCTTAGAGCGGGCTGCTC CGCCCGCCACGCTGTCTAGTGTGGTGTGGGGGCTTCTGGTTGTGTTTCTA CACACGCAGCAGCCCAGGGTTCACCCCATGTCCCGAAGACAAGGAGCTAT GTATTGTCTGGTACGTGAAAAACAATTGAACAAAACTTGACTTGGGTTTG AGTACGAAAAGTGTCACCAAACCGTCAGCCAAGTTTGACTGCTGTTTAGT ATTGGAAAGTGTCACCACATCTTGGGGGGCCCTGCGGCTTGGTTTTGGGA GGACTGTCATTCAGAGGGCTTGCGTACAACACACTGAACCCCCTTGACGT GACTTAAGCGCCAACCCTTTCCCGTACCGACACAACTGCTCGTGGCGCAC AGGCCCGGGTTCTGACCCTCCCAGACTTCTACGGCAAGGCGTGGGGCCCC GCTGTCGAGATCCTGGTATCCCTGCTCACCTGCGTGTCGTTCATCTGCCT TCTCGCGGGAAACCTGGTGAGCGAGCGAGCGTGCGCCTTGTGTGTTGTGC GCTGTGTGTCCATGTCCACGGCATGCCAGAAGAAGAAAGTTGGTTAGCCT TTTGATGCTCCAACTCGCTTGCCTCTCTTTCGTACAACTATAGAACCATG TTTTACGCACAGCGCTGCAATATACTGTTATTGTGCGATCCAACAGGCGG GTCTTTCGGTCATCATCCGCTTCCTCTTCGGCGGAGCGCTGCCTACGAGC GTCTTCATTGCCGGCTTCGTGACCATGGTCTACACCGGCGCCGGGGGGCT CCTCTCCGTGGCCTACACCGGTCAGCACAAAAGCACAATGACCATGACTC ATGCTCATGCAGTTCGCGGAGTCTGTGACAAACCGAAACCCCAGTCAATG GCCCGTTTCAACGGCTTTAGATACGACTCTGTGGAAATATCACATTATGT ATTATGAGCCCATGGCGCATCAAAATCGGCGACTTTTAGTATCGACTTGA CTTGAACTTTGCTGATCATGCTGCATCATAAATACATGTCCAACTCCTAA GTACATAAAAGTATTATAAAGCATGTGGATACATCCGCGTCGAGCTTACA AACGTTAAGATACTAGGAGTACTACTTGACCTGCTGCCGTTCATGTCATG CACATGTATCACTTCTCAGACGTTGCCCAGGCCTCGATCGGGCTGGTGGG CCTGCTTATTGTCGCGGCGTGGATGCTCGACAACAGGGAGACTACGCACC CGCCCCCCAGCATCGGCTTCCCCGGATACCTCTACCCTAACGACGACATC TGCGAGATGTACCAGGTACGTTTGTGTATGTCTGCTCTGCTCTGTGCCCG TCGAGTCAAGTCAAGTTGAGCCACGTCAAAACAACGTAATTTTCTCGTTG GCCAGATGAGAAAACGTACGGAAGGTGAGACCCATGTTTATGGTCAGAAA ATCTTAAAAACAATATCTGGATACCGTAATCATGCGAAGGTTCGCACCCC CGTGTTAGCATTTTTCTAAAGCGTATTTCTCCACAACCAGGAGGGTGCGA ACGCTAACTGATACCTCTCTGGAAAGCCTCCGACGAGACGTTTCGAAAGC C
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9319:4287..6587+

>mRNA_L-elsbetiae_contig9319.18321.1 ID=mRNA_L-elsbetiae_contig9319.18321.1|Name=mRNA_L-elsbetiae_contig9319.18321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig9319:4287..6587+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCTCGGCCTCAGCCTCATTATCAACGGCCTGTTCATCGCTCGCCA
CATCAACAAGATGGGGCTCGGCCTCAGCCTCATTATCAACGGCCTGTTCA
TCGCTCGCCACATCAACAAGGCCCGGGTTCTGACCCTCCCAGACTTCTAC
GGCAAGGCGTGGGGCCCCGCTGTCGAGATCCTGGTATCCCTGCTCACCTG
CGTGTCGTTCATCTGCCTTCTCGCGGGAAACCTGGCCCGGGTTCTGACCC
TCCCAGACTTCTACGGCAAGGCGTGGGGCCCCGCTGTCGAGATCCTGGTA
TCCCTGCTCACCTGCGTGTCGTTCATCTGCCTTCTCGCGGGAAACCTGGC
GGGTCTTTCGGTCATCATCCGCTTCCTCTTCGGCGGAGCGCTGCCTACGA
GCGTCTTCATTGCCGGCTTCGTGACCATGGTCTACACCGGCGCCGGGGGG
CTCCTCTCCGTGGCCTACACCGGCGGGTCTTTCGGTCATCATCCGCTTCC
TCTTCGGCGGAGCGCTGCCTACGAGCGTCTTCATTGCCGGCTTCGTGACC
ATGGTCTACACCGGCGCCGGGGGGCTCCTCTCCGTGGCCTACACCGACGT
TGCCCAGGCCTCGATCGGGCTGGTGGGCCTGCTTATTGTCGCGGCGTGGA
TGCTCGACAACAGGGAGACTACGCACCCGCCCCCCAGCATCGGCTTCCCC
GGATACCTCTACCCTAACGACGACATCTGCGAGATGTACCAGGTACGTTT
GTGTATGTCTGCTCTGCTCTGTGCCCGTCGAGTCAAGTCAAGTTGAACGT
TGCCCAGGCCTCGATCGGGCTGGTGGGCCTGCTTATTGTCGCGGCGTGGA
TGCTCGACAACAGGGAGACTACGCACCCGCCCCCCAGCATCGGCTTCCCC
GGATACCTCTACCCTAACGACGACATCTGCGAGATGTACCAGGTACGTTT
GTGTATGTCTGCTCTGCTCTGTGCCCGTCGAGTCAAGTCAAGTTGA
back to top