mRNA_L-elsbetiae_contig9309.18308.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9309.18308.1
Unique NamemRNA_L-elsbetiae_contig9309.18308.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9309.18308.1 vs. uniprot
Match: D7G4K4_ECTSI (Spondin domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 3.710e-23
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:  103 MKVTATFALASVLASSADASTFKVRVRNLTYLQPFSPPLIVAHTNDVALFKEAFPASEAIQIMAENGD 306
            +K TA FALASVL S A A+ FKVRVRNLTYLQPFSP L+VAHTNDVALFKE  PAS+AI++MAE+GD
Sbjct:    2 VKFTAGFALASVL-SLAHATDFKVRVRNLTYLQPFSPMLVVAHTNDVALFKEGLPASDAIKLMAEDGD 68
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BLAST of mRNA_L-elsbetiae_contig9309.18308.1 vs. uniprot
Match: D7FIE5_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.540e-21
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:  112 TATFALASVL----ASSADAST--FKVRVRNLTYLQPFSPPLIVAHTNDVALFKEAFPASEAIQIMAENGD 306
            TA FA+AS++    AS  D +T  FKVRVRNLTYLQPFSPPLIVAHT DVALFKE FPA++AI++MAE+GD
Sbjct:    5 TAAFAMASLVSLANASGKDYNTVPFKVRVRNLTYLQPFSPPLIVAHTKDVALFKEGFPANDAIKLMAEDGD 75
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BLAST of mRNA_L-elsbetiae_contig9309.18308.1 vs. uniprot
Match: D7G4K3_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.800e-16
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:  151 ADASTFKVRVRNLTYLQPFSPPLIVAHTNDVALFKEAFPASEAIQIMAENGD 306
            A+A    VRVRNLTYLQPFSP  +VAHTNDV++F+E FPAS+A++IMAE+GD
Sbjct:    2 ANAGEVYVRVRNLTYLQPFSPMFVVAHTNDVSIFREGFPASDAVKIMAEDGD 53
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9309.18308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4K4_ECTSI3.710e-2376.47Spondin domain-containing protein n=3 Tax=Ectocarp... [more]
D7FIE5_ECTSI2.540e-2170.42Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
D7G4K3_ECTSI3.800e-1669.23Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9309contigL-elsbetiae_contig9309:1132..1968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog2880.D7G4K4
Hectar predicted targeting categoryother localisation
EggNOG OGs28TMI@1,2S5Q9@2759
Ec32 ortholog descriptionSpondin, N-terminal
Ec32 orthologEc-11_001600.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size309
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9309.18308.1prot_L-elsbetiae_contig9309.18308.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9309 1132..1967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.8141944-CDS-L-elsbetiae_contig9309:1131..13021622817000.8141944-CDS-L-elsbetiae_contig9309:1131..1302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9309 1132..1302 +
1691683973.5753603-CDS-L-elsbetiae_contig9309:1131..13021691683973.5753603-CDS-L-elsbetiae_contig9309:1131..1302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9309 1132..1302 +
1622817000.824824-CDS-L-elsbetiae_contig9309:1590..16561622817000.824824-CDS-L-elsbetiae_contig9309:1590..1656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9309 1591..1656 +
1691683973.5889566-CDS-L-elsbetiae_contig9309:1590..16561691683973.5889566-CDS-L-elsbetiae_contig9309:1590..1656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9309 1591..1656 +
1622817000.8375504-CDS-L-elsbetiae_contig9309:1898..19671622817000.8375504-CDS-L-elsbetiae_contig9309:1898..1967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9309 1899..1967 +
1691683973.6015446-CDS-L-elsbetiae_contig9309:1898..19671691683973.6015446-CDS-L-elsbetiae_contig9309:1898..1967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9309 1899..1967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9309.18308.1

>prot_L-elsbetiae_contig9309.18308.1 ID=prot_L-elsbetiae_contig9309.18308.1|Name=mRNA_L-elsbetiae_contig9309.18308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
KIKRCPRTRGHAPHNHHWHSLFQHLYPSTTLPNKMKVTATFALASVLASS
ADASTFKVRVRNLTYLQPFSPPLIVAHTNDVALFKEAFPASEAIQIMAEN
GD
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mRNA from alignment at L-elsbetiae_contig9309:1132..1968+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9309.18308.1 ID=mRNA_L-elsbetiae_contig9309.18308.1|Name=mRNA_L-elsbetiae_contig9309.18308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=837bp|location=Sequence derived from alignment at L-elsbetiae_contig9309:1132..1968+ (Laminarionema elsbetiae ELsaHSoW15)
AAAATTAAACGTTGTCCGCGGACACGCGGACACGCACCACACAACCATCA
CTGGCACTCCCTCTTCCAACATCTATATCCTTCAACTACTCTACCCAACA
AGATGAAGGTCACCGCCACTTTTGCTCTCGCCTCCGTGCTCGCCTCCTCC
GCGGACGCCAGCACGTTCAAAGTACGTTTGCATACCGGAAACCCTCTCTT
CCTAACGAGTATCTAGACAACAACCTTCCGAGTTGACTCGTGTATCCCCG
CAACGTTTCTCAAGAAGGCTAACAGCAGTACGATAAATATCATGCCTTCG
CCTCCGGCGTGCTGCTGTGTCTTTTCTTTAGCTTCCTTGTTGCCTTTTCT
GTCCCTGGTCCATGAGATATGTAACTGAACCGTTTTCTCTTTGGAACTTC
CAAGCTACTTTCTTGACCCCTGTTCGTCGCCGTTGCGCGTCTCTCGCATG
TGTTCGCAGGTGCGAGTCCGCAACCTGACCTACTTGCAGCCCTTCTCGCC
CCCCCTCATTGTGGCGCACACCAACGTGAGTGTACTACTAAGTGGTTCGC
ATGAACTTTCACGCGATCTTTGGCGCCCATTTTTGAATTCATGTACTGTA
GATAGTAGTATCTGTGGAACGAGGCTGCTGTTCGCTGCCTGCCTGCTTTT
GTACGGAAGCTTGACTTGGGTTTATTCGAAAAAGTATTGGTATTTCCAAG
TACGGCAGTCTTAACCGATGATTGTCACGTACACACGCAACGCGTACCGT
GACTCTCCCGTATCCAGGATGTTGCCCTCTTCAAGGAGGCGTTCCCTGCC
AGCGAAGCTATCCAAATCATGGCTGAGAACGGAGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9309:1132..1968+

>mRNA_L-elsbetiae_contig9309.18308.1 ID=mRNA_L-elsbetiae_contig9309.18308.1|Name=mRNA_L-elsbetiae_contig9309.18308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig9309:1132..1968+ (Laminarionema elsbetiae ELsaHSoW15)
AAAATTAAACGTTGTCCGCGGACACGCGGACACGCACCACACAACCATCA
CTGGCACTCCCTCTTCCAACATCTATATCCTTCAACTACTCTACCCAACA
AGATGAAGGTCACCGCCACTTTTGCTCTCGCCTCCGTGCTCGCCTCCTCC
GCGGACGCCAGCACGTTCAAAAAAATTAAACGTTGTCCGCGGACACGCGG
ACACGCACCACACAACCATCACTGGCACTCCCTCTTCCAACATCTATATC
CTTCAACTACTCTACCCAACAAGATGAAGGTCACCGCCACTTTTGCTCTC
GCCTCCGTGCTCGCCTCCTCCGCGGACGCCAGCACGTTCAAAGTGCGAGT
CCGCAACCTGACCTACTTGCAGCCCTTCTCGCCCCCCCTCATTGTGGCGC
ACACCAACGTGCGAGTCCGCAACCTGACCTACTTGCAGCCCTTCTCGCCC
CCCCTCATTGTGGCGCACACCAACGATGTTGCCCTCTTCAAGGAGGCGTT
CCCTGCCAGCGAAGCTATCCAAATCATGGCTGAGAACGGAGACGATGTTG
CCCTCTTCAAGGAGGCGTTCCCTGCCAGCGAAGCTATCCAAATCATGGCT
GAGAACGGAGAC
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