mRNA_L-elsbetiae_contig9307.18306.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9307.18306.1
Unique NamemRNA_L-elsbetiae_contig9307.18306.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9307.18306.1 vs. uniprot
Match: A0A6H5JEM5_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM5_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 8.060e-36
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 EHQVGLLGAINPVASFFWTPVACAFADRHNVQQQVVYVALLLLAVTRPSVLFVSSFLAVAAVETSVSISGSPVGSLIDSAVRNAFGADG 267
            E  VGLLGAINPVASFFWTPVACAFADRHN+QQQVVYVA +L AVTRPSVL  SSFLAVAAVE SVS+S SPVGSL+D+A+R+A G DG
Sbjct:    7 ESIVGLLGAINPVASFFWTPVACAFADRHNIQQQVVYVASILYAVTRPSVLLASSFLAVAAVEISVSVSESPVGSLVDAAIRHASGGDG 95
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BLAST of mRNA_L-elsbetiae_contig9307.18306.1 vs. uniprot
Match: A0A6H5K6H4_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 7.240e-31
Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    1 EHQVGLLGAINPVASFFWTPVACAFADRHNVQQQVVYVALLLLAVTRPSVLFVSSFLAVAAVETSVSISGSPVGSLIDSAVRNAFGADG 267
            EHQVG+LGAI PVASFF  PV CAFADRH++ QQVVY AL L  VTRPSVLF  +FLAVAAVE S S S SP+GSLIDS++R AFG DG
Sbjct:   38 EHQVGILGAIRPVASFFVNPVMCAFADRHSIHQQVVYTALFLYVVTRPSVLFAGTFLAVAAVEASCSFSTSPIGSLIDSSIRQAFGGDG 126
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BLAST of mRNA_L-elsbetiae_contig9307.18306.1 vs. uniprot
Match: D7G0X8_ECTSI (Probable maltose permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X8_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.210e-19
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:    7 QVGLLGAINPVASFFWTPVACAFADRHNVQQQVVYVALLLLAVTRPSVLFVSSFLAVAAVETSVSISGSPVGSLIDSAVRNAFGADG 267
            +VGLL A+ P+A     P  CAF D+H VQQ  +YV LLL A+T  +VLF  SF A+AAVE S S+S SP+ SLID+AVRNAFG+ G
Sbjct:  161 EVGLLAAVRPIAVILAGPTICAFTDKHGVQQTALYVLLLLFAITGSTVLFAGSFFALAAVEISSSVSRSPIVSLIDAAVRNAFGSGG 247
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BLAST of mRNA_L-elsbetiae_contig9307.18306.1 vs. uniprot
Match: D7G3W1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W1_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.630e-9
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 EHQVGLLGAINPVASFFWTPVACAFADRHNVQQQ 102
            EHQVG+LGAI PVASFF TPV CAFADRH++ QQ
Sbjct:   12 EHQVGILGAIRPVASFFVTPVMCAFADRHSIHQQ 45
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9307.18306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JEM5_9PHAE8.060e-3680.90MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5K6H4_9PHAE7.240e-3173.03MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G0X8_ECTSI1.210e-1957.47Probable maltose permease n=1 Tax=Ectocarpus silic... [more]
D7G3W1_ECTSI1.630e-979.41MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9307contigL-elsbetiae_contig9307:471..1164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue5e-17
Seed eggNOG ortholog2880.D7G0X8
Hectar predicted targeting categorychloroplast
EggNOG free text desc.MFS_1 like family
EggNOG OGs2F0V7@1,2T1YI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.6893473-CDS-L-elsbetiae_contig9307:471..6361622817000.6893473-CDS-L-elsbetiae_contig9307:471..636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9307 472..636 -
1691683973.5026157-CDS-L-elsbetiae_contig9307:471..6361691683973.5026157-CDS-L-elsbetiae_contig9307:471..636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9307 472..636 -
1622817000.7044432-CDS-L-elsbetiae_contig9307:1062..11641622817000.7044432-CDS-L-elsbetiae_contig9307:1062..1164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9307 1063..1164 -
1691683973.5140014-CDS-L-elsbetiae_contig9307:1062..11641691683973.5140014-CDS-L-elsbetiae_contig9307:1062..1164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9307 1063..1164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9307.18306.1prot_L-elsbetiae_contig9307.18306.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9307 472..1164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9307.18306.1

>prot_L-elsbetiae_contig9307.18306.1 ID=prot_L-elsbetiae_contig9307.18306.1|Name=mRNA_L-elsbetiae_contig9307.18306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
EHQVGLLGAINPVASFFWTPVACAFADRHNVQQQVVYVALLLLAVTRPSV
LFVSSFLAVAAVETSVSISGSPVGSLIDSAVRNAFGADG
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mRNA from alignment at L-elsbetiae_contig9307:471..1164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9307.18306.1 ID=mRNA_L-elsbetiae_contig9307.18306.1|Name=mRNA_L-elsbetiae_contig9307.18306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=694bp|location=Sequence derived from alignment at L-elsbetiae_contig9307:471..1164- (Laminarionema elsbetiae ELsaHSoW15)
GAGCACCAGGTTGGCCTGCTGGGCGCCATTAATCCGGTCGCCTCCTTTTT
TTGGACCCCGGTCGCCTGTGCCTTCGCGGACAGACACAACGTCCAGCAGC
AGGTGATGCCACCCCCCCCTGTGCTGTTTGTATCCATTCTCTCTGGTCGT
TAACGCACCCCGTTCATGCTATTCGCCCGCATTCACACACGGAGCAAGTT
GCCCCATACCCGTATCTCTGGCCCAGCGCTACAACAGAGAGAAGAGCGCG
GTTCGGTCCGGCCGGAGAGAGTTGGTATAGATCGTTGTCCGTGTACGGTG
GCATGGAGTGAAATTCATGGAAAACGGATGTCGGCGTGCACGGTTTGAAG
CAGGCAGCCGCGTCTTTCTTGAGGGTACAGCTATATATTTTCGGGACGTT
TTCGCACGCTCTTGTCAATCCGTGCACTATTTCCATCGCAGCACGGAGGG
CAACGAAGCTTAGGCCGTCGCCCCCCCCTTCGCTGCCCGCCTCTCCTGTT
GTCACTCCCCTCTTTAATCACCGCGAAGGTGGTCTACGTGGCGTTGCTCC
TACTCGCCGTTACTCGACCGTCCGTGTTGTTCGTCAGCTCCTTCCTAGCC
GTGGCGGCGGTGGAGACGTCGGTTTCCATTTCTGGCAGTCCCGTCGGTAG
CCTCATCGATTCGGCCGTCAGAAATGCTTTTGGCGCAGATGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9307:471..1164-

>mRNA_L-elsbetiae_contig9307.18306.1 ID=mRNA_L-elsbetiae_contig9307.18306.1|Name=mRNA_L-elsbetiae_contig9307.18306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig9307:471..1164- (Laminarionema elsbetiae ELsaHSoW15)
GAGCACCAGGTTGGCCTGCTGGGCGCCATTAATCCGGTCGCCTCCTTTTT
TTGGACCCCGGTCGCCTGTGCCTTCGCGGACAGACACAACGTCCAGCAGC
AGGAGCACCAGGTTGGCCTGCTGGGCGCCATTAATCCGGTCGCCTCCTTT
TTTTGGACCCCGGTCGCCTGTGCCTTCGCGGACAGACACAACGTCCAGCA
GCAGGTGGTCTACGTGGCGTTGCTCCTACTCGCCGTTACTCGACCGTCCG
TGTTGTTCGTCAGCTCCTTCCTAGCCGTGGCGGCGGTGGAGACGTCGGTT
TCCATTTCTGGCAGTCCCGTCGGTAGCCTCATCGATTCGGCCGTCAGAAA
TGCTTTTGGCGCAGATGGGGTGGTCTACGTGGCGTTGCTCCTACTCGCCG
TTACTCGACCGTCCGTGTTGTTCGTCAGCTCCTTCCTAGCCGTGGCGGCG
GTGGAGACGTCGGTTTCCATTTCTGGCAGTCCCGTCGGTAGCCTCATCGA
TTCGGCCGTCAGAAATGCTTTTGGCGCAGATGGG
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