mRNA_L-elsbetiae_contig9296.18293.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9296.18293.1
Unique NamemRNA_L-elsbetiae_contig9296.18293.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 2.830e-34
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 3
Query:   54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281
            NDGDLAR MEL S+ IVRTYS RVYGNITEEKLRAM+SGCT IDGVRYKGMFVRVEGGGGKGREGRNA LTIECT+
Sbjct:  247 NDGDLARKMELPSSNIVRTYSVRVYGNITEEKLRAMRSGCT-IDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTE 321          
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.120e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3
Query:  159 MQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281
            M+SGCT IDGVRYKGMFVRVEGGGGKGREGRNA LTIECT+
Sbjct:    1 MRSGCT-IDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTE 40          
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: A0A7S2KG34_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KG34_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.510e-10
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 3
Query:   54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281
            N G  AR +EL S  + RTY ARV+G +T  KL A++ G   I+GVRYKGM VR+EG   KG  G N  L I+CT+
Sbjct:  172 NCGHFARQLELPSNALHRTYRARVHGRLTFGKLSAIRRGVE-INGVRYKGMDVRIEGNLKKG--GTNTWLQIKCTE 244          
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: UPI00083A406E (rRNA pseudouridine synthase n=1 Tax=unclassified Phenylobacterium TaxID=2640670 RepID=UPI00083A406E)

HSP 1 Score: 63.9 bits (154), Expect = 7.100e-10
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 3
Query:   54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTI 269
            NDG+LAR +E+ STGIVR Y AR +G  T+EKL  +Q G T +DGVRY  +  R++    +G +G N  LT+
Sbjct:  142 NDGELARALEMPSTGIVRRYRARAHGRTTQEKLDTLQKGAT-VDGVRYGPIEARLDKAK-EGPQGANLWLTV 211          
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: A0A7G9S8P3_9SPHN (Pseudouridine synthase n=1 Tax=Sphingomonas rhizophila TaxID=2071607 RepID=A0A7G9S8P3_9SPHN)

HSP 1 Score: 63.2 bits (152), Expect = 9.370e-10
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 3
Query:   54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281
            NDG+L R +EL STG+VRTY AR +G+IT+E L  +  G T IDGVRY  +   +E      R GRN  + +  T+
Sbjct:  159 NDGELKRQLELPSTGVVRTYRARAFGDITQEALEDLAEGIT-IDGVRYGSIDANLER-----RTGRNCWIELSLTE 228          
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: UPI00201E66BB (rRNA pseudouridine synthase n=1 Tax=Sphingomonas sp. RG327 TaxID=2908207 RepID=UPI00201E66BB)

HSP 1 Score: 62.0 bits (149), Expect = 2.060e-9
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 3
Query:   54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281
            NDG+L R  EL  TG+VRTY AR +GN+T+E+L A+  G T ++GV Y  +   +E      R GRN  + +  T+
Sbjct:  134 NDGELKRQFELPKTGVVRTYRARAFGNVTQEQLEALSEGVT-VEGVNYGSINANLER-----RTGRNCWIELSLTE 203          
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: UPI00201CE941 (rRNA pseudouridine synthase n=1 Tax=Sphingomonas sp. SE158 TaxID=2908208 RepID=UPI00201CE941)

HSP 1 Score: 60.8 bits (146), Expect = 4.480e-9
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 3
Query:   54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGR 242
            NDG+L RL+EL  TG+VR+Y AR +G++T+ +L  +  G T I+GVRY  +   +E G G+ R
Sbjct:  111 NDGELKRLLELPKTGVVRSYRARAFGDVTQAQLEDLSEGIT-IEGVRYGSIDANLERGSGRNR 172          
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: A0A3N9RXB9_9SPHN (Pseudouridine synthase n=5 Tax=unclassified Novosphingobium TaxID=2644732 RepID=A0A3N9RXB9_9SPHN)

HSP 1 Score: 61.2 bits (147), Expect = 5.090e-9
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 3
Query:   54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281
            NDG+L R MEL STG+ RTY AR +G+IT+E+L A+  G   I+G+RY  +   +E      R GRN  + +  T+
Sbjct:  168 NDGELKRAMELPSTGVPRTYRARTFGDITQERLEALSEGVE-IEGIRYGSIDANMER-----RTGRNQWIELTLTE 237          
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: A0A7G9SGS5_9SPHN (Pseudouridine synthase n=1 Tax=Sphingomonas lutea TaxID=1045317 RepID=A0A7G9SGS5_9SPHN)

HSP 1 Score: 60.5 bits (145), Expect = 8.270e-9
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3
Query:   54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGR 242
            NDG+L R +EL  TG+VRTY AR YG IT+++L ++  G T I+GVRY  +   +E   G+ R
Sbjct:  146 NDGELKRQLELPRTGVVRTYRARAYGEITQDQLESLAEGFT-IEGVRYGSINANLERSSGRNR 207          
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: UPI001F234ACC (rRNA pseudouridine synthase n=1 Tax=Sphingomonas sp. G124 TaxID=2904799 RepID=UPI001F234ACC)

HSP 1 Score: 60.5 bits (145), Expect = 8.540e-9
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 3
Query:   54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281
            NDG+L R +EL STG+VR Y AR +G++T+ +L A+  G T IDG+RY  +   +E      R GRN  + +  T+
Sbjct:  151 NDGELKRQLELPSTGVVRRYRARAFGDVTQAQLEALSEGVT-IDGIRYGSIDANLER-----RTGRNCWIEMALTE 220          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE8_ECTSI2.830e-3488.16RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J790_9PHAE1.120e-1490.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2KG34_9STRA4.510e-1051.32Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
UPI00083A406E7.100e-1048.61rRNA pseudouridine synthase n=1 Tax=unclassified P... [more]
A0A7G9S8P3_9SPHN9.370e-1046.05Pseudouridine synthase n=1 Tax=Sphingomonas rhizop... [more]
UPI00201E66BB2.060e-942.11rRNA pseudouridine synthase n=1 Tax=Sphingomonas s... [more]
UPI00201CE9414.480e-946.03rRNA pseudouridine synthase n=1 Tax=Sphingomonas s... [more]
A0A3N9RXB9_9SPHN5.090e-943.42Pseudouridine synthase n=5 Tax=unclassified Novosp... [more]
A0A7G9SGS5_9SPHN8.270e-947.62Pseudouridine synthase n=1 Tax=Sphingomonas lutea ... [more]
UPI001F234ACC8.540e-942.11rRNA pseudouridine synthase n=1 Tax=Sphingomonas s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9296contigL-elsbetiae_contig9296:1595..2549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9296.18293.1prot_L-elsbetiae_contig9296.18293.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9296 1618..2472 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816999.7446203-UTR-L-elsbetiae_contig9296:1594..16171622816999.7446203-UTR-L-elsbetiae_contig9296:1594..1617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9296 1595..1617 -
1691683972.8142352-UTR-L-elsbetiae_contig9296:1594..16171691683972.8142352-UTR-L-elsbetiae_contig9296:1594..1617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9296 1595..1617 -
1622816999.7797258-UTR-L-elsbetiae_contig9296:2472..25491622816999.7797258-UTR-L-elsbetiae_contig9296:2472..2549Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9296 2473..2549 -
1691683972.855486-UTR-L-elsbetiae_contig9296:2472..25491691683972.855486-UTR-L-elsbetiae_contig9296:2472..2549Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9296 2473..2549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816999.7574484-CDS-L-elsbetiae_contig9296:1617..17431622816999.7574484-CDS-L-elsbetiae_contig9296:1617..1743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9296 1618..1743 -
1691683972.8283904-CDS-L-elsbetiae_contig9296:1617..17431691683972.8283904-CDS-L-elsbetiae_contig9296:1617..1743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9296 1618..1743 -
1622816999.7687104-CDS-L-elsbetiae_contig9296:2415..24721622816999.7687104-CDS-L-elsbetiae_contig9296:2415..2472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9296 2416..2472 -
1691683972.8386128-CDS-L-elsbetiae_contig9296:2415..24721691683972.8386128-CDS-L-elsbetiae_contig9296:2415..2472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9296 2416..2472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9296.18293.1

>prot_L-elsbetiae_contig9296.18293.1 ID=prot_L-elsbetiae_contig9296.18293.1|Name=mRNA_L-elsbetiae_contig9296.18293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGG
GGKGREGRNA*
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mRNA from alignment at L-elsbetiae_contig9296:1595..2549-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9296.18293.1 ID=mRNA_L-elsbetiae_contig9296.18293.1|Name=mRNA_L-elsbetiae_contig9296.18293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=955bp|location=Sequence derived from alignment at L-elsbetiae_contig9296:1595..2549- (Laminarionema elsbetiae ELsaHSoW15)
GGGACGGTTGGACTACTTCTGCTGTACAACACACAAGGCCTCCTGCTGCT GACAACGACGGGGACCTAGCCCGCCTGATGGAGCTGTCGAGCACTGGCAT CGTCCGTACCTACTCCGCCCGCGTGTACGGAAACGTGAGCATGACCTCAT AACACGAAATATGTCGGCTCGCTCTCTCATCCACGCACCGCGGTCCTGCC GATGTTGGTTTTGCCGTGGTTTTTGATCTGATTCGGAAATATTTTTTTAG TTTGGCTCGAGTTGAACGCTTGTCACGTGGTAGGGTCTTTTGGTGGAGGA CGCCATGAACAGCCATGAAAGCTCGTGCATACACACCACTACGTCGACAG CAGCGTCGGGCCGACTCTTTGTTAATTGAATATCGCTCCGTGGCAGAAAG GGGGTAAGGGAGAGGGGGCGCACCCGAGACTCTTTACAGCGGAGACGAAC CATCACTTGGAATACAGACGGCACTGCTATCTCCTTGGTCACGCGCGCAC AACCGGTTTCTGCCGTATTTTTTGTTCGCCGTTGGAGTTTAAGGTAGCTT TTTCGTTGTCATCGGAAGAGTCGTGGTAGGCTGGGTGCTGCAGGGCTGTG CAAATATGCATTGGTTCTTAAGTGTGGCTGGCCTGGACCACGTATTGTTT CTAGACCAGGTTTTAGTGCTGAGTCGTGCCCCAAGAGGCTTAAACGTTTT TGCAACTGCTTAAATGACAGCAGCAGCAGTAGGTCTGGTGGACTATGTTT GTATCCTCACCACGTTTGTTTTGTTGGTGGTGGGCCGTTTCTGTTTCACC CCGCAGATAACGGAAGAGAAGCTGAGGGCCATGCAGAGCGGCTGCACCAT CATCGACGGAGTCCGGTACAAGGGCATGTTCGTGAGAGTCGAGGGGGGCG GCGGCAAGGGGAGGGAGGGCCGCAACGCCTAGCTGACCATCGAGTGCACC AAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9296:1595..2549-

>mRNA_L-elsbetiae_contig9296.18293.1 ID=mRNA_L-elsbetiae_contig9296.18293.1|Name=mRNA_L-elsbetiae_contig9296.18293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig9296:1595..2549- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCTGTCGAGCACTGGCATCGTCCGTACCTACTCCGCCCGCGTGTA
CGGAAACATGGAGCTGTCGAGCACTGGCATCGTCCGTACCTACTCCGCCC
GCGTGTACGGAAACATAACGGAAGAGAAGCTGAGGGCCATGCAGAGCGGC
TGCACCATCATCGACGGAGTCCGGTACAAGGGCATGTTCGTGAGAGTCGA
GGGGGGCGGCGGCAAGGGGAGGGAGGGCCGCAACGCCTAGATAACGGAAG
AGAAGCTGAGGGCCATGCAGAGCGGCTGCACCATCATCGACGGAGTCCGG
TACAAGGGCATGTTCGTGAGAGTCGAGGGGGGCGGCGGCAAGGGGAGGGA
GGGCCGCAACGCCTAG
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