mRNA_L-elsbetiae_contig9296.18293.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI) HSP 1 Score: 131 bits (330), Expect = 2.830e-34 Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 3 Query: 54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281 NDGDLAR MEL S+ IVRTYS RVYGNITEEKLRAM+SGCT IDGVRYKGMFVRVEGGGGKGREGRNA LTIECT+ Sbjct: 247 NDGDLARKMELPSSNIVRTYSVRVYGNITEEKLRAMRSGCT-IDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTE 321
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 1.120e-14 Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 Query: 159 MQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281 M+SGCT IDGVRYKGMFVRVEGGGGKGREGRNA LTIECT+ Sbjct: 1 MRSGCT-IDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTE 40
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: A0A7S2KG34_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KG34_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 4.510e-10 Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 3 Query: 54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281 N G AR +EL S + RTY ARV+G +T KL A++ G I+GVRYKGM VR+EG KG G N L I+CT+ Sbjct: 172 NCGHFARQLELPSNALHRTYRARVHGRLTFGKLSAIRRGVE-INGVRYKGMDVRIEGNLKKG--GTNTWLQIKCTE 244
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: UPI00083A406E (rRNA pseudouridine synthase n=1 Tax=unclassified Phenylobacterium TaxID=2640670 RepID=UPI00083A406E) HSP 1 Score: 63.9 bits (154), Expect = 7.100e-10 Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 3 Query: 54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTI 269 NDG+LAR +E+ STGIVR Y AR +G T+EKL +Q G T +DGVRY + R++ +G +G N LT+ Sbjct: 142 NDGELARALEMPSTGIVRRYRARAHGRTTQEKLDTLQKGAT-VDGVRYGPIEARLDKAK-EGPQGANLWLTV 211
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: A0A7G9S8P3_9SPHN (Pseudouridine synthase n=1 Tax=Sphingomonas rhizophila TaxID=2071607 RepID=A0A7G9S8P3_9SPHN) HSP 1 Score: 63.2 bits (152), Expect = 9.370e-10 Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 3 Query: 54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281 NDG+L R +EL STG+VRTY AR +G+IT+E L + G T IDGVRY + +E R GRN + + T+ Sbjct: 159 NDGELKRQLELPSTGVVRTYRARAFGDITQEALEDLAEGIT-IDGVRYGSIDANLER-----RTGRNCWIELSLTE 228
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: UPI00201E66BB (rRNA pseudouridine synthase n=1 Tax=Sphingomonas sp. RG327 TaxID=2908207 RepID=UPI00201E66BB) HSP 1 Score: 62.0 bits (149), Expect = 2.060e-9 Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 3 Query: 54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281 NDG+L R EL TG+VRTY AR +GN+T+E+L A+ G T ++GV Y + +E R GRN + + T+ Sbjct: 134 NDGELKRQFELPKTGVVRTYRARAFGNVTQEQLEALSEGVT-VEGVNYGSINANLER-----RTGRNCWIELSLTE 203
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: UPI00201CE941 (rRNA pseudouridine synthase n=1 Tax=Sphingomonas sp. SE158 TaxID=2908208 RepID=UPI00201CE941) HSP 1 Score: 60.8 bits (146), Expect = 4.480e-9 Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 3 Query: 54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGR 242 NDG+L RL+EL TG+VR+Y AR +G++T+ +L + G T I+GVRY + +E G G+ R Sbjct: 111 NDGELKRLLELPKTGVVRSYRARAFGDVTQAQLEDLSEGIT-IEGVRYGSIDANLERGSGRNR 172
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: A0A3N9RXB9_9SPHN (Pseudouridine synthase n=5 Tax=unclassified Novosphingobium TaxID=2644732 RepID=A0A3N9RXB9_9SPHN) HSP 1 Score: 61.2 bits (147), Expect = 5.090e-9 Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 3 Query: 54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281 NDG+L R MEL STG+ RTY AR +G+IT+E+L A+ G I+G+RY + +E R GRN + + T+ Sbjct: 168 NDGELKRAMELPSTGVPRTYRARTFGDITQERLEALSEGVE-IEGIRYGSIDANMER-----RTGRNQWIELTLTE 237
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: A0A7G9SGS5_9SPHN (Pseudouridine synthase n=1 Tax=Sphingomonas lutea TaxID=1045317 RepID=A0A7G9SGS5_9SPHN) HSP 1 Score: 60.5 bits (145), Expect = 8.270e-9 Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3 Query: 54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGR 242 NDG+L R +EL TG+VRTY AR YG IT+++L ++ G T I+GVRY + +E G+ R Sbjct: 146 NDGELKRQLELPRTGVVRTYRARAYGEITQDQLESLAEGFT-IEGVRYGSINANLERSSGRNR 207
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Match: UPI001F234ACC (rRNA pseudouridine synthase n=1 Tax=Sphingomonas sp. G124 TaxID=2904799 RepID=UPI001F234ACC) HSP 1 Score: 60.5 bits (145), Expect = 8.540e-9 Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 3 Query: 54 NDGDLARLMELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGGGKGREGRNA*LTIECTK 281 NDG+L R +EL STG+VR Y AR +G++T+ +L A+ G T IDG+RY + +E R GRN + + T+ Sbjct: 151 NDGELKRQLELPSTGVVRRYRARAFGDVTQAQLEALSEGVT-IDGIRYGSIDANLER-----RTGRNCWIEMALTE 220 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9296.18293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9296.18293.1 >prot_L-elsbetiae_contig9296.18293.1 ID=prot_L-elsbetiae_contig9296.18293.1|Name=mRNA_L-elsbetiae_contig9296.18293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp MELSSTGIVRTYSARVYGNITEEKLRAMQSGCTIIDGVRYKGMFVRVEGGback to top mRNA from alignment at L-elsbetiae_contig9296:1595..2549- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9296.18293.1 ID=mRNA_L-elsbetiae_contig9296.18293.1|Name=mRNA_L-elsbetiae_contig9296.18293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=955bp|location=Sequence derived from alignment at L-elsbetiae_contig9296:1595..2549- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9296:1595..2549- >mRNA_L-elsbetiae_contig9296.18293.1 ID=mRNA_L-elsbetiae_contig9296.18293.1|Name=mRNA_L-elsbetiae_contig9296.18293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig9296:1595..2549- (Laminarionema elsbetiae ELsaHSoW15)back to top |