mRNA_L-elsbetiae_contig9294.18292.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9294.18292.1
Unique NamemRNA_L-elsbetiae_contig9294.18292.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.230e-23
Identity = 52/73 (71.23%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 219
            +FG  A   HLRVVGARAFVH E H +KL  RAWEGRLVGYS DS++YRIYN  TRRV ESRNV FIET  AP
Sbjct:  790 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAP 862          
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.330e-23
Identity = 52/73 (71.23%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 219
            +FG  A   HLRVVGARAFVH E H +KL  RAWEGRLVGYS DS++YRIYN  TRRV ESRNV FIET  AP
Sbjct: 1019 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAP 1091          
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.500e-23
Identity = 52/73 (71.23%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 219
            +FG  A   HLRVVGARAFVH E H +KL  RAWEGRLVGYS DS++YRIYN  TRRV ESRNV FIET  AP
Sbjct:  696 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETNPAP 768          
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.490e-22
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVP 225
            MFG+QA+  HLRV+G+ AFVH E ++ KL +RAW G L+GYS DSRAYR++NP T+R+V SRNVTFIE  DA +P
Sbjct:  203 MFGKQASLRHLRVIGSTAFVHLETYKSKLANRAWPGILIGYSPDSRAYRVFNPRTKRIVHSRNVTFIEPMDAAMP 277          
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.190e-22
Identity = 49/86 (56.98%), Postives = 67/86 (77.91%), Query Frame = 1
Query:    1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPAAAADTRESFF 258
            M+G++A  S LRV+GAR+FV+YE + +KL DR +EG+L G+S+DS+ YRIYNPAT  VVESRNVTFIETP   +P +  D  ++F+
Sbjct: 1141 MYGKEADLSRLRVIGARSFVNYERYTKKLSDRTFEGKLCGFSRDSKTYRIYNPATGNVVESRNVTFIETPAYSMPPSVLDD-DNFY 1225          
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.030e-21
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVP 225
            MFG+QA+  HLRV+G+ AFVH E ++ KL +RAW G LVGYS +S AYRIYNP T+R+V SRNVTFIE  DA +P
Sbjct:  685 MFGKQASLRHLRVIGSSAFVHVETYKSKLANRAWPGILVGYSPNSNAYRIYNPHTKRIVPSRNVTFIEPMDAAMP 759          
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.350e-21
Identity = 50/73 (68.49%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 219
            +FG  A   H RVVGARAFVH E H +KL  RAWEGRLVGYS DS++YRIYN  TRRV ESRNV FIET  +P
Sbjct:   46 LFGTDAHLGHPRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPSP 118          
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.870e-21
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETP 210
            ++G+ A   HLRV+G+RAFVH E H  KL+ RAWEGRLVGYS DS++YRIYN  TRRV  SRNV FIETP
Sbjct:  260 LYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIETP 329          
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.830e-20
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPAAAAD 240
            ++G+ A   HLRV+G+RAFVH E H  KL+ RAWEGRLVGYS DS++YRIYN  TRRV  SR V FI+TP  PV  A A+
Sbjct:  729 LYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRIVVFIKTP--PVAPALAE 806          
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.000e-19
Identity = 49/73 (67.12%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 219
            +FG  A   HLRVVGARAFVH E H +KL  RA EGRLVGYS DS++YRIYN  T RV ESRN  FIET  AP
Sbjct:  235 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRACEGRLVGYSLDSKSYRIYNAQTTRVRESRNDIFIETTPAP 307          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE6.230e-2371.23Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE6.330e-2371.23Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE8.500e-2371.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCZ9_9PHAE1.490e-2262.67Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRS9_9PHAE2.190e-2256.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE1.030e-2164.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMG0_9PHAE1.350e-2168.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE1.870e-2167.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN1_9PHAE5.830e-2061.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE2.000e-1967.12Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9294contigL-elsbetiae_contig9294:1988..2317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score65.1
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog7425.NV17383-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size332
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816999.6649036-CDS-L-elsbetiae_contig9294:1987..23171622816999.6649036-CDS-L-elsbetiae_contig9294:1987..2317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9294 1988..2317 +
1691683972.7665179-CDS-L-elsbetiae_contig9294:1987..23171691683972.7665179-CDS-L-elsbetiae_contig9294:1987..2317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9294 1988..2317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9294.18292.1prot_L-elsbetiae_contig9294.18292.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9294 1988..2317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9294.18292.1

>prot_L-elsbetiae_contig9294.18292.1 ID=prot_L-elsbetiae_contig9294.18292.1|Name=mRNA_L-elsbetiae_contig9294.18292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRI
YNPATRRVVESRNVTFIETPDAPVPAAAADTRESFFPPDADSRGDVCFGD
DRDSDSSVDS
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mRNA from alignment at L-elsbetiae_contig9294:1988..2317+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9294.18292.1 ID=mRNA_L-elsbetiae_contig9294.18292.1|Name=mRNA_L-elsbetiae_contig9294.18292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig9294:1988..2317+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGGCGAGCAGGCTGCGCCATCGCACCTGCGCGTGGTGGGCGCTCG CGCATTCGTCCACTACGAGCATCACCGGGAGAAGCTGCAGGACCGCGCCT GGGAAGGGCGCTTGGTTGGCTACAGCAAGGACAGCCGGGCCTACCGCATC TACAACCCCGCGACGCGTCGGGTGGTGGAGTCCCGCAACGTCACCTTCAT TGAAACCCCGGATGCTCCCGTTCCCGCTGCCGCCGCCGACACTCGTGAAT CATTTTTCCCTCCGGACGCTGATTCAAGGGGGGATGTGTGTTTCGGCGAC GACAGAGACAGCGACAGCAGCGTAGACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9294:1988..2317+

>mRNA_L-elsbetiae_contig9294.18292.1 ID=mRNA_L-elsbetiae_contig9294.18292.1|Name=mRNA_L-elsbetiae_contig9294.18292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig9294:1988..2317+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGGCGAGCAGGCTGCGCCATCGCACCTGCGCGTGGTGGGCGCTCG
CGCATTCGTCCACTACGAGCATCACCGGGAGAAGCTGCAGGACCGCGCCT
GGGAAGGGCGCTTGGTTGGCTACAGCAAGGACAGCCGGGCCTACCGCATC
TACAACCCCGCGACGCGTCGGGTGGTGGAGTCCCGCAACGTCACCTTCAT
TGAAACCCCGGATGCTCCCGTTCCCGCTGCCGCCGCCGACACTCGTGAAT
CATTTTTCCCTCCGGACGCTGATTCAAGGGGGGATGTGTGTTTCGGCGAC
GACAGAGACAGCGACAGCAGCGTAGACAGCATGTTCGGCGAGCAGGCTGC
GCCATCGCACCTGCGCGTGGTGGGCGCTCGCGCATTCGTCCACTACGAGC
ATCACCGGGAGAAGCTGCAGGACCGCGCCTGGGAAGGGCGCTTGGTTGGC
TACAGCAAGGACAGCCGGGCCTACCGCATCTACAACCCCGCGACGCGTCG
GGTGGTGGAGTCCCGCAACGTCACCTTCATTGAAACCCCGGATGCTCCCG
TTCCCGCTGCCGCCGCCGACACTCGTGAATCATTTTTCCCTCCGGACGCT
GATTCAAGGGGGGATGTGTGTTTCGGCGACGACAGAGACAGCGACAGCAG
CGTAGACAGC
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