mRNA_L-elsbetiae_contig9294.18292.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 102 bits (253), Expect = 6.230e-23 Identity = 52/73 (71.23%), Postives = 56/73 (76.71%), Query Frame = 1 Query: 1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 219 +FG A HLRVVGARAFVH E H +KL RAWEGRLVGYS DS++YRIYN TRRV ESRNV FIET AP Sbjct: 790 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAP 862
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 102 bits (253), Expect = 6.330e-23 Identity = 52/73 (71.23%), Postives = 56/73 (76.71%), Query Frame = 1 Query: 1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 219 +FG A HLRVVGARAFVH E H +KL RAWEGRLVGYS DS++YRIYN TRRV ESRNV FIET AP Sbjct: 1019 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAP 1091
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 101 bits (252), Expect = 8.500e-23 Identity = 52/73 (71.23%), Postives = 56/73 (76.71%), Query Frame = 1 Query: 1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 219 +FG A HLRVVGARAFVH E H +KL RAWEGRLVGYS DS++YRIYN TRRV ESRNV FIET AP Sbjct: 696 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETNPAP 768
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.490e-22 Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1 Query: 1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVP 225 MFG+QA+ HLRV+G+ AFVH E ++ KL +RAW G L+GYS DSRAYR++NP T+R+V SRNVTFIE DA +P Sbjct: 203 MFGKQASLRHLRVIGSTAFVHLETYKSKLANRAWPGILIGYSPDSRAYRVFNPRTKRIVHSRNVTFIEPMDAAMP 277
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.190e-22 Identity = 49/86 (56.98%), Postives = 67/86 (77.91%), Query Frame = 1 Query: 1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPAAAADTRESFF 258 M+G++A S LRV+GAR+FV+YE + +KL DR +EG+L G+S+DS+ YRIYNPAT VVESRNVTFIETP +P + D ++F+ Sbjct: 1141 MYGKEADLSRLRVIGARSFVNYERYTKKLSDRTFEGKLCGFSRDSKTYRIYNPATGNVVESRNVTFIETPAYSMPPSVLDD-DNFY 1225
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.030e-21 Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1 Query: 1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVP 225 MFG+QA+ HLRV+G+ AFVH E ++ KL +RAW G LVGYS +S AYRIYNP T+R+V SRNVTFIE DA +P Sbjct: 685 MFGKQASLRHLRVIGSSAFVHVETYKSKLANRAWPGILVGYSPNSNAYRIYNPHTKRIVPSRNVTFIEPMDAAMP 759
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.350e-21 Identity = 50/73 (68.49%), Postives = 55/73 (75.34%), Query Frame = 1 Query: 1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 219 +FG A H RVVGARAFVH E H +KL RAWEGRLVGYS DS++YRIYN TRRV ESRNV FIET +P Sbjct: 46 LFGTDAHLGHPRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPSP 118
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.870e-21 Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1 Query: 1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETP 210 ++G+ A HLRV+G+RAFVH E H KL+ RAWEGRLVGYS DS++YRIYN TRRV SRNV FIETP Sbjct: 260 LYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIETP 329
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 5.830e-20 Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1 Query: 1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAPVPAAAAD 240 ++G+ A HLRV+G+RAFVH E H KL+ RAWEGRLVGYS DS++YRIYN TRRV SR V FI+TP PV A A+ Sbjct: 729 LYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRIVVFIKTP--PVAPALAE 806
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.000e-19 Identity = 49/73 (67.12%), Postives = 53/73 (72.60%), Query Frame = 1 Query: 1 MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIYNPATRRVVESRNVTFIETPDAP 219 +FG A HLRVVGARAFVH E H +KL RA EGRLVGYS DS++YRIYN T RV ESRN FIET AP Sbjct: 235 LFGTDAHLGHLRVVGARAFVHEETHTKKLDSRACEGRLVGYSLDSKSYRIYNAQTTRVRESRNDIFIETTPAP 307 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9294.18292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9294.18292.1 >prot_L-elsbetiae_contig9294.18292.1 ID=prot_L-elsbetiae_contig9294.18292.1|Name=mRNA_L-elsbetiae_contig9294.18292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp MFGEQAAPSHLRVVGARAFVHYEHHREKLQDRAWEGRLVGYSKDSRAYRIback to top mRNA from alignment at L-elsbetiae_contig9294:1988..2317+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9294.18292.1 ID=mRNA_L-elsbetiae_contig9294.18292.1|Name=mRNA_L-elsbetiae_contig9294.18292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig9294:1988..2317+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9294:1988..2317+ >mRNA_L-elsbetiae_contig9294.18292.1 ID=mRNA_L-elsbetiae_contig9294.18292.1|Name=mRNA_L-elsbetiae_contig9294.18292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig9294:1988..2317+ (Laminarionema elsbetiae ELsaHSoW15)back to top |