mRNA_L-elsbetiae_contig9277.18284.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9277.18284.1
Unique NamemRNA_L-elsbetiae_contig9277.18284.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Match: A0A6H5JFR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.950e-14
Identity = 45/114 (39.47%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   88 NALHAAIQGGHEGVVSSLVDNGASLLLLEGAGKDALDIGGYA-PIYMAALYGHVAAALALMTGGADVSLRCGEYKGSVLLAAAVRRYVDIIRAAIERGADMDAVRASQTTALHI 426
            +ALHAA++ G+  VV++L+++GA + + +  G   L +     P++ A L+GH+ +A ALM  GA++++RCG  K +VL  AA +  VDI+RA ++ GAD+ AV   +  ALH+
Sbjct:    3 SALHAAVRYGYAEVVTNLLEHGACVSIKDARGSTPLQVAAECTPLFGALLFGHLTSARALMAAGAEINVRCGLSKRTVLSLAAEKGDVDILRALVKNGADVTAVDNDRDMALHV 116          
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.060e-12
Identity = 65/172 (37.79%), Postives = 94/172 (54.65%), Query Frame = 1
Query:    1 AQLLKAPLQRAARQSNRGLA----QKLTRAGAKNALHAAIQGGHEGVVSSLVDNGAS--LLLLEGAGKDALDIGGYAPIYMAALYGHVAAALALMTGGADVSLRCGEYKGSVLLAAAVRR-YVDIIRAAIERGADMDAVRASQTTALHIAVLENKAGAIDVLVEAGANIQAR 495
            A+ L+ PL+ AA   N  L     +KL RAG   A+  +        +  LV +  S  LLL +GA  D LD  G  PI+++A  G ++A  AL+  G D SLR G+ +    L  A R  +V++++A I  G D+DA  ++  TALH A   +  GAI+ L+EAGANI A+
Sbjct:   48 AEWLRTPLEHAAGAGNLDLVTKSYRKLRRAGTTTAIPLS-------TLLPLVASAISCPLLLRDGAEVDVLDTKGRTPIHLSAKRGSLSAVQALLAAGGDSSLRYGKGEAFSALGLAARGGHVEVMQALIRHGVDVDAPDSNGLTALHSAATGDAVGAIETLMEAGANIDAQ 212          
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.880e-11
Identity = 58/171 (33.92%), Postives = 88/171 (51.46%), Query Frame = 1
Query:   94 LHAAIQGGHEGVVSSLVDNGASLLLLEGAGKDALDIGGYAPIYMAALYGHVAAALALMTGGADVSLRCGEYKGS--VLLAAAVRRYVDIIRAAIERGADMDAVRASQTTALHIAVLENKAGAIDVLVEAGANIQARDK--WGPHTSSLCCPLCASLAALLVPLRHGAHVNA 594
            LH A   G EG V++L+  GA         K+ LD  G  P+++A   GH++   AL+    D S+R   +  S  VL  AA +    ++RA ++ G D++  R    T+LH+A L N+  AIDVLVEAGA+++  D     P   + C   C   A  L   +HG+++ A
Sbjct:   42 LHVAASQGQEGRVATLLAGGAK--------KNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVRYRIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNR-RTDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDA-CINHCHEAALALY--KHGSNIEA 200          
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.320e-11
Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  163 LLLEGAGKDALDIGGYAPIYMAALYGHVAAALALMTGGADVSL--RCGEYKGSVLLAAAVRRYVDIIRAAIERGADMDAVRASQTTALHIAVLENKAGAIDVLVEAGANIQARDKWGPHTSSLCCPLCASLAALLVPLRHGAHVNA 594
            LL EGA K+ LD  G  P+++A   GH++   AL+    D S+  R      SVL  AA +    ++RA ++ G D++  R    T+LH+A L N+  AIDVLVEAGA+++  D          C      AAL +  +HGA++ A
Sbjct:  106 LLAEGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVHYRIWNRSYSVLDFAAQKGDACVLRAILQHGVDVNR-RTDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALAL-FKHGANIEA 249          
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Match: A0A6H5KSG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.160e-10
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  274 GADVSLRCGEYKGSVLLAAAVRRYVDIIRAAIERGADMDAVRASQTTALHIAVLENKAGAIDVLVEAGANIQARDK 501
            GAD+SLR G+   S L  AA+   VD++RA +  G D++A  +   TALH     N+AGAID LVEAGA++ AR +
Sbjct:   58 GADLSLRSGDNNESALETAAINGDVDVVRAMVRHGVDVNARDSQGLTALHAVAESNQAGAIDALVEAGAHVNARGR 133          
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.790e-9
Identity = 58/171 (33.92%), Postives = 90/171 (52.63%), Query Frame = 1
Query:   94 LHAAIQGGHEGVVSSLVDNGASLLLLEGAGKDALDIGGYAPIYMAALYGHVAAALALMTGGADVSLRC--GEYKGSVLLAAAVRR-YVDIIRAAIERGADMDAVRASQTTALHIAVLENKAGAIDVLVEAGANIQARDKWGPH--TSSLCCPLCASLAALLVPLRHGAHVN 591
            LH A   G+  VVS+L+ N  + +       DALD  G +P+ +A+  GH +   AL+  GAD++LR   G + G   +  AV + +V +I A +E G ++ A      TALH A     A A+DVL++AGA++ A+     H  T    C +  S  A++  L+ G +VN
Sbjct:  176 LHLAAASGNNRVVSTLLGNAMTDV-------DALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHA---RGAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVN 336          
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.130e-7
Identity = 69/211 (32.70%), Postives = 94/211 (44.55%), Query Frame = 1
Query:   19 PLQRAARQSNRGLAQKLTRAGA----------KNALHAAIQGGHEGVVSSLVDNGASLLLLEGAGKDALDIG--------GYAPIYMAALYGHVAAALALMTGGADVSLRCGEYKGSVLLAAAVRRYVDIIRAAIERGADMDAVRASQTTALHIAVLENKAGAIDVLVEAGANIQARDKWGP--HTSSLCCPLCASLAALLVPLRHGAHVN 591
            PLQ AA + N    Q L  AGA           +AL  A+  G+  VV   +++   + + +  GK AL           G  P+++ A+ G  AAA AL+  GADV+LR      S                    G D++A   +  TAL +A   +KA AIDVL EAGANI+A+       H +S    L A +A L    RHGA V 
Sbjct:  410 PLQMAAGEGNVAATQALLDAGADASSQSEGEASSALDCAVCQGYTDVVRVKIEHEIDVNISDVDGKTALHHAVAAGKVEMGCTPLHLVAMAGRAAAAQALLDAGADVALRQNGVGLSSXXXXXXXXXXXXXXXXXXHGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIEAQANGSTPLHVASQEGRLAAGIALL----RHGASVG 616          
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Match: A0A1F2VK43_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 TaxID=1797188 RepID=A0A1F2VK43_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 9.560e-7
Identity = 40/118 (33.90%), Postives = 59/118 (50.00%), Query Frame = 1
Query:  205 GYAPIYMAALYGHVAAALALMTGGADVSLRCGEYKGSVLLAAAVRR-----------YVDIIRAAIERGADMDAVRASQTTALHIAVLENKAGAIDVLVEAGANIQARDKWGPHTSSL 525
            G  P  +AA  G      +L+  GAD  L   +   +++LAA V R            ++ ++ A+E GAD++A   S TTALH A        I +LVE G+ ++ARDKWG    S+
Sbjct:  101 GATPFLLAAASGDAGTMRSLVQAGADPLLMTEDRTTALMLAAGVGRDDDRMKEEEEGALEAVKLALELGADLNATNRSGTTALHGAAFIGADSIIQLLVEKGSRLEARDKWGQTALSI 218          
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 4.610e-6
Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 1
Query:    1 AQLLKAPLQRAARQSNRGLAQKLTRAGAK--NALHAAIQGGHEGVVSSLVDNGASLLLLEGAGKDALDIGGYAPIYMAALYGHVAAALALMTGG-------------------------ADVSLRCGEYKGSVLLAAAVRRYVDIIRAAIERGADMDAVRASQTTA 417
            A++L+ PL+ AA Q N  L QKL RAGA   +ALHAA++ GH  VV++L+++GA + + +  G   L +                                                  ADV++RCG  K +VL  AA + +VDI+RA ++ GAD+ AV   + TA
Sbjct:   47 AEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAVRYGHAEVVTNLLEHGACVSIKDTRGSTPLQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVNVRCGLLKRTVLSLAAEKGHVDILRALVKHGADVTAVDNDRDTA 212          
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Match: A0A6H5I8Z6_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I8Z6_9HYME)

HSP 1 Score: 56.6 bits (135), Expect = 4.890e-6
Identity = 52/160 (32.50%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  169 LEGAGKDALDIGGYAPIYMAALYGHVAAALALMTGGADVSLRCGEYKGSVLLAAAVRRYVDIIRAAIERGADMDAVRASQTTALH----IAVLENKAGA------------IDVLVEAGANIQARDKWGPHT-SSLCCPLCASLAALLVPLRHGAHVNAL 597
            LE A K+  D  GY  ++ A + G+  AA  L+  GADV   C  YK S L AAA  ++ D++   +E GAD +      +T LH    + + E ++              + +LVEAGA+I+AR++ G     +    L   LA +L  L+HGA +++L
Sbjct:  130 LESARKNHCDEQGYTYLHAACVAGNATAARKLLRRGADVD--CDSYKYSALQAAAWYKHEDVVEVLLEAGADPNRPDVEGSTPLHSLSWLCLCECESSRRYCDKRKPVERIVRMLVEAGADIEARNRHGDTALQASVSRLDVELARVL--LKHGASLSSL 285          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9277.18284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JFR1_9PHAE7.950e-1439.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN15_9PHAE2.060e-1237.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6X8_ECTSI4.880e-1133.92Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KNU3_9PHAE9.320e-1136.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG6_9PHAE3.160e-1047.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1F4_9PHAE2.790e-933.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY9_9PHAE2.130e-732.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1F2VK43_9BACT9.560e-733.90Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
D8LL12_ECTSI4.610e-631.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5I8Z6_9HYME4.890e-632.50Uncharacterized protein n=1 Tax=Trichogramma brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9277contigL-elsbetiae_contig9277:1199..1880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue7.1e-11
Seed eggNOG ortholog2880.D7G6X8
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size597
Cds size597
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816998.9786084-CDS-L-elsbetiae_contig9277:1198..13571622816998.9786084-CDS-L-elsbetiae_contig9277:1198..1357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9277 1199..1357 +
1691683972.2449417-CDS-L-elsbetiae_contig9277:1198..13571691683972.2449417-CDS-L-elsbetiae_contig9277:1198..1357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9277 1199..1357 +
1622816998.9903445-CDS-L-elsbetiae_contig9277:1442..18801622816998.9903445-CDS-L-elsbetiae_contig9277:1442..1880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9277 1443..1880 +
1691683972.266021-CDS-L-elsbetiae_contig9277:1442..18801691683972.266021-CDS-L-elsbetiae_contig9277:1442..1880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9277 1443..1880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9277.18284.1prot_L-elsbetiae_contig9277.18284.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9277 1199..1880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9277.18284.1

>prot_L-elsbetiae_contig9277.18284.1 ID=prot_L-elsbetiae_contig9277.18284.1|Name=mRNA_L-elsbetiae_contig9277.18284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
AQLLKAPLQRAARQSNRGLAQKLTRAGAKNALHAAIQGGHEGVVSSLVDN
GASLLLLEGAGKDALDIGGYAPIYMAALYGHVAAALALMTGGADVSLRCG
EYKGSVLLAAAVRRYVDIIRAAIERGADMDAVRASQTTALHIAVLENKAG
AIDVLVEAGANIQARDKWGPHTSSLCCPLCASLAALLVPLRHGAHVNAL
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mRNA from alignment at L-elsbetiae_contig9277:1199..1880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9277.18284.1 ID=mRNA_L-elsbetiae_contig9277.18284.1|Name=mRNA_L-elsbetiae_contig9277.18284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=682bp|location=Sequence derived from alignment at L-elsbetiae_contig9277:1199..1880+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCAGTTGCTGAAAGCTCCACTCCAGCGTGCCGCACGCCAGAGTAACAG GGGCCTCGCACAAAAGCTGACGAGGGCAGGGGCAAAGAATGCACTGCATG CAGCCATTCAGGGTGGCCATGAAGGGGTCGTGAGCAGTCTGGTGGACAAT GGGGCATCTGTCGCCGCCAAGGAAGCGTCTTGGGCTGGCAGTACTCCTCT CCACCTTGTTGCTGCAAAGAAAGGGAGAAACGTAAATAGTGCAGTTGTTG TTGCTCGAGGGAGCTGGCAAAGACGCCTTGGACATCGGCGGATACGCACC TATTTATATGGCCGCCTTGTATGGCCACGTGGCTGCCGCACTAGCTCTCA TGACTGGCGGCGCGGACGTCAGCCTTCGTTGCGGAGAATACAAGGGGTCG GTACTGCTCGCAGCGGCTGTACGAAGGTATGTTGACATCATAAGGGCGGC GATCGAGCGCGGGGCGGACATGGATGCTGTCCGTGCAAGCCAAACCACAG CCCTGCATATCGCTGTACTTGAAAACAAGGCTGGGGCGATTGACGTGCTC GTGGAGGCTGGGGCCAACATTCAAGCACGGGATAAATGGGGGCCACACAC CTCTTCACTATGCTGCCCACTATGCGCCAGCCTCGCAGCGTTATTGGTTC CGTTGAGGCATGGTGCCCACGTCAACGCCCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9277:1199..1880+

>mRNA_L-elsbetiae_contig9277.18284.1 ID=mRNA_L-elsbetiae_contig9277.18284.1|Name=mRNA_L-elsbetiae_contig9277.18284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig9277:1199..1880+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCAGTTGCTGAAAGCTCCACTCCAGCGTGCCGCACGCCAGAGTAACAG
GGGCCTCGCACAAAAGCTGACGAGGGCAGGGGCAAAGAATGCACTGCATG
CAGCCATTCAGGGTGGCCATGAAGGGGTCGTGAGCAGTCTGGTGGACAAT
GGGGCATCTGCGCAGTTGCTGAAAGCTCCACTCCAGCGTGCCGCACGCCA
GAGTAACAGGGGCCTCGCACAAAAGCTGACGAGGGCAGGGGCAAAGAATG
CACTGCATGCAGCCATTCAGGGTGGCCATGAAGGGGTCGTGAGCAGTCTG
GTGGACAATGGGGCATCTTTGTTGTTGCTCGAGGGAGCTGGCAAAGACGC
CTTGGACATCGGCGGATACGCACCTATTTATATGGCCGCCTTGTATGGCC
ACGTGGCTGCCGCACTAGCTCTCATGACTGGCGGCGCGGACGTCAGCCTT
CGTTGCGGAGAATACAAGGGGTCGGTACTGCTCGCAGCGGCTGTACGAAG
GTATGTTGACATCATAAGGGCGGCGATCGAGCGCGGGGCGGACATGGATG
CTGTCCGTGCAAGCCAAACCACAGCCCTGCATATCGCTGTACTTGAAAAC
AAGGCTGGGGCGATTGACGTGCTCGTGGAGGCTGGGGCCAACATTCAAGC
ACGGGATAAATGGGGGCCACACACCTCTTCACTATGCTGCCCACTATGCG
CCAGCCTCGCAGCGTTATTGGTTCCGTTGAGGCATGGTGCCCACGTCAAC
GCCCTTTTGTTGTTGCTCGAGGGAGCTGGCAAAGACGCCTTGGACATCGG
CGGATACGCACCTATTTATATGGCCGCCTTGTATGGCCACGTGGCTGCCG
CACTAGCTCTCATGACTGGCGGCGCGGACGTCAGCCTTCGTTGCGGAGAA
TACAAGGGGTCGGTACTGCTCGCAGCGGCTGTACGAAGGTATGTTGACAT
CATAAGGGCGGCGATCGAGCGCGGGGCGGACATGGATGCTGTCCGTGCAA
GCCAAACCACAGCCCTGCATATCGCTGTACTTGAAAACAAGGCTGGGGCG
ATTGACGTGCTCGTGGAGGCTGGGGCCAACATTCAAGCACGGGATAAATG
GGGGCCACACACCTCTTCACTATGCTGCCCACTATGCGCCAGCCTCGCAG
CGTTATTGGTTCCGTTGAGGCATGGTGCCCACGTCAACGCCCTT
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