mRNA_L-elsbetiae_contig92.18220.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig92.18220.1 vs. uniprot
Match: D7FK86_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK86_ECTSI) HSP 1 Score: 486 bits (1252), Expect = 1.220e-151 Identity = 517/1104 (46.83%), Postives = 573/1104 (51.90%), Query Frame = 3
Query: 24 MRKTGGRLAPTRGSFNACLNACRYGRQRDKVLSVLEMMVEDGVPPSGKSYSSALQACAKDGNVPDARKMLGRMWTSPDLEGGIKGLRPTTWXXXXXXXXXXXXXDWASALELMDEMSGHGLAHDAFTXXXXXXXXXXXXXXXXXXXXXXXXAGAYTDSLGPPRGSGXXXXXXLAAAGDPGAPSLAPTTVHCNAVLRAYGRGKRCVCAPPSTLRIFFLLFSFCTSTNYPSLTVPSYVTANKNYFPSNLCLFFQKSSPGAYRVLCIFPLLAETTYVRFLFVCLSFSYLSSPLMLAVTTHGGAEGGFAPRPPGSPTAAEQPETTPPAADVSDARSXXXXXXXXXXXXXXESGGPLPVWDPRLPLPRPDAISFGTVIDGCSRARLADEAVRLLTKMRQHVMGGAYFTRAGRSAALGGADSRXXXXXXXXXXXXXXXXXXXXRGSLLPPNVHCVTAAITACGRANRPEQAVAVLEEAVALEDAWLEQQLAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSGTILKGAEPAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGLGATGSTLVAAGAAGAATESVFSGALLPAYNAAINSSLGAGRNDEAQALMRSMRKRGLRPGREIFNSLLVACSDSCEALGLLADMELARVDPDVATYTAAIGACSRGGNLRAALELFGMMC-----GGPAA-------GTGGGGCRGRRRXXXXXXRGERIRRGAPRADAQAYGAAAAACARGLDHKAAVRLLGEMREAGLRPGRPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGKGLELLSKMRRKRVRANSTCVNAAIHGFTLLGDWETALDVLESMEMVYQVVPDSA-LALFDRMRSYPPDPPRGDKTAPPSXXXXXXXPSRAQPRPP--LLRVSIRDDGEGL----PAAG-----------DATAGVPGASARDRGLVGSGAVPVRRGNSQGPAXXXXXXXXXXXXRGTSKDGAK-------NKRAGEGG--VFRASSPPRPDTASYNTVIAAVASSWGWEGRGQAMALVDEMRVSGGVISKAAAVCMETWCRE 3218
MRK GGRLAP+R SFN CLNACR+GRQRDKV+SVLE+MV+DG+PPSGKSYSSALQACAKDGNVPDARKMLG MWTSPDLEGG+KGLRPTT XXXXXXXXXXXXXDW SA+ELMDEM GL+HDA XXXXXXXXXXXXXXXXXXXXX A AYT+SL GSG A SL+PT VHCNA+L+AY RGKR LR+ + + + PS P S L+ WDPRLPLPRPDA+SFGTVIDGCSRARLADEAV LL M + +GG +A + G XXXXXXXXXXXXXXXX LLPPNVHC+TAAITACGRANR E A+AVL EA LEDAWL++Q G + A AA G V T A G A + L PA+NAAIN+ + AG + EA+ LMR M +RGLRPGRE FNSLLVACS S EA+ +LA+ME ARV PDVA+YTAAIGACSRGG+L AAL LF M G AA GTG GG GR R AP ADAQAYGAAAAACARGLDH+ A+RLLGEMREA LRPGRPM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +ME Y VVPDSA LALFDRMRSYPP+PPR XXXX S + R P LRVS+ + G PAA DA A + + G V GAV R G A + +GA+ K +GG FRASSPPRPDTASYNTVIAAVAS+WGW GRGQA AL+ EM G + A C WC E
Sbjct: 1 MRKAGGRLAPSRSSFNICLNACRHGRQRDKVMSVLELMVQDGIPPSGKSYSSALQACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTXXXXXXXXXXXXXXDWGSAVELMDEMRTRGLSHDAXXXXXXXXXXXXXXXXXXXXXXXEQMADAYTESLEGANGSGDDDAGGGVFAHSGKKSSLSPTAVHCNALLQAYSRGKRV----DKALRLLDEMLAVAPAL--PSSATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XRSALLR--------------------------------------------------------------WDPRLPLPRPDAVSFGTVIDGCSRARLADEAVCLLKVMGEERIGG--------TAPIAGXXXXXXXXXXXXXXXXXXXXSGDT--PLLPPNVHCLTAAITACGRANRLELAIAVLREAAVLEDAWLDEQGRG-------------------------------------------------VEADAGIAASGGRSSVNETAKFNSGKLAGGEDAEATIDGDKSATAGAVAAWDGSETSTAEGPLRARSS------LQPAFNAAINACVKAGSHGEARLLMRDMGERGLRPGREAFNSLLVACSTSYEAMNILAEMERARVAPDVASYTAAIGACSRGGDLPAALGLFEAMRRPSPPGAAAAAARVVEPGTGDGGAGGRAATV----------RAAPMADAQAYGAAAAACARGLDHRGALRLLGEMREARLRPGRPMFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMERTYHVVPDSAGLALFDRMRSYPPNPPRSXXXXXXXXXXXSAA-SHSTKRHPRTFLRVSLPNGGGAAAMVQPAAXXXXXXXXXXXRDAGADSADSVEKSGGEVVGGAVACRE--RAGVAGGEGISTAHPRSAVAATEGAEVSAAVGAGKXXXQGGRSAFRASSPPRPDTASYNTVIAAVASAWGWGGRGQATALLREM----GFLQ---ARCRRDWCEE 941
BLAST of mRNA_L-elsbetiae_contig92.18220.1 vs. uniprot
Match: A0A6H5KCA9_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA9_9PHAE) HSP 1 Score: 462 bits (1188), Expect = 9.020e-141 Identity = 534/1160 (46.03%), Postives = 589/1160 (50.78%), Query Frame = 3
Query: 24 MRKTGGRLAPTRGSFNACLNACRYGRQRDKVLSVLEMMVEDGVPPSGKSYSSALQACAKDGNVPDARKMLGRMWTSPDLEGGIKGLRPTTWXXXXXXXXXXXXXDWASALELMDEMSGHGLAHDAFTXXXXXXXXXXXXXXXXXXXXXXXXAGAYTDSLGPPRGSGXXXXXX-LAAAGDPGAPSLAPTTVHCNAVLRAYGRGKRCVCAPPSTLRIFFLLFSFCTSTNYPSLTVPSYVTANKNYFPSNLCLFFQKSSPGAYRVLCIFPLLAETTYVRFLFVCLSFSYLSSPLMLAVTT-----HGGAEGGFAPRPP-----GSPTAAEQPETTPPA---------------ADVSDARSXXXXXXXXXXXXXXESG--GPLPVWDPRLPLPRPDAISFGTVIDGCSRARLADEAVRLLTKMRQHVMGGAYFTRAGRSAALGGADSRXXXXXXXXXXXXXXXXXXXXRGSLLPPNVHCVTAAITACGRANRPEQAVAVLEEAVALEDAWLEQQ------LAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSGTILKGAEPAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGLGATGSTLVAAGAAGAATESVFSGA---------LLPAYNAAINSSLGAGRNDEAQALMRSMRKRGLRPGREIFNSLLVACSDSCEALGLLADMELARVDPDVATYTAAIGACSRGGNLRAALELFGMMC--GGPAA----------GTGGGGCRGRRRXXXXXXRGERIRRGAPRADAQAYGAAAAACARGLDHKAAVRLLGEMREAGLRPGRPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGKGLELLSKMRRKRVRANSTCVNAAIHGFTLLGDWETALDVLESMEMVYQVVPDSA------------------LALFDRMRSYPPDPPRGDKTAPPSXXXXXXXP-SRAQPRPP--LLRVSIRDDGEGLP--------------------------AAGDATAGVPGASARDRGLVGSGAVPVRRGN-SQGPAXXXXXXXXXXXXRGTSKDGAKNKRA---------GEGGVFRASSPPRPDTASYNTVIAAVASSWGWEGRGQAMALVDEMRVSG 3167
MRK GGRLAP+R SFN CLNACR+GRQRDKV+SVLEMMV+DG+PPSGKSYSSALQACAKDGNVPDARKMLG MWTSPDLEGG+KGLRPTT XXXXXXXXXXXXXDW SA+ELMDEM HGL+HDAFTXXXXXXXXXXXXXXXXXXXXXX A AY +SL GSG +AA G L PT VHCNA+L+AY RGKR LR+ + + +A F V ++ S +T G AE + P+PP SP A + A + S E L WDPRLPLPRPDA+SFGTVIDGCSRARLADEAV LL M + +GG A GG S LLPPNVHC+TAAITACGRANR E A+AVL EA LEDAWL++Q L XXXXXXXXXXXXXXXXXXXX TS G G AAGAA A S A L PA+NAAIN+ + +G + EA+ LMR M +RGLRPGRE FNSLLV CS S EA+ LLA+ME ARV PDVA+YTAAIGACSRGG+L AAL LF M P+A GTG G GR R AP ADAQAYGAAAAACARGLDH+ A+RLLGEMREAGLRPGRPM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +ME + VVPDS LALFDRMRSYPP+P XXXXXXX S + R P LRVS+ +A DA G G VG GA R G S G A + GA+ A G FRASSPPRPDTASYNTVIAAV S+WGW G+GQA AL+ EMRV G
Sbjct: 1 MRKAGGRLAPSRSSFNICLNACRHGRQRDKVMSVLEMMVQDGIPPSGKSYSSALQACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTXXXXXXXXXXXXXXDWGSAVELMDEMRTHGLSHDAFTXXXXXXXXXXXXXXXXXXXXXXQMADAYIESLEVANGSGDDGTGGDVAACAHSGKSPLFPTAVHCNALLQAYSRGKRV----DKALRLLDEMLAVAPVPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIAAGL-TEFDPVEDEEAFSSGXXXXXXSTSYRRTQGLAEIHYRPQPPLGEGESSPAARSEXXXXXXXXXXXXXXXXXXXXXIAKIGKEESTADGGGGEGSRDNDEGDDWSALLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVGLLKVMGEERIGGT------APIAGGGGGSGDTP--------------------LLPPNVHCLTAAITACGRANRLELAMAVLREAAVLEDAWLDEQVRLSRRLQEDDAHEKSSTASPAAAWEXXXXXXXXXXXXXXXXXXXXRNQPPGEDTSPVADSGTSSTTISKERGVGADAGIAASGGRSLVNETAMFNGGKLAGGKDAEATIDGVKSAAAGAAAAWDRRETSTAEGPLPARSSLQPAFNAAINACVKSGSHGEARLLMRDMGERGLRPGREAFNSLLVVCSTSYEAMNLLAEMERARVVPDVASYTAAIGACSRGGDLPAALGLFEAMRRPSPPSAAAATXXXAEPGTGDGAVGGRAAKV----------RAAPMADAQAYGAAAAACARGLDHRGALRLLGEMREAGLRPGRPMFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMERAHHVVPDSVSYNTAMKACFRSGQNQAGLALFDRMRSYPPNPXXXXXXXXXXXXXXXXXXASHSTKRHPRTFLRVSLPKGXXXXXXXXXXXXXXXXXXXXXXXXXXARLQQSARDA--GADSVEKNGGGFVG-GAAACREGEESPGVAGGEGIGTAHSRAAVAATGGAEVSAAVGRXXXXXXGGRSAFRASSPPRPDTASYNTVIAAVGSAWGWGGQGQATALLREMRVRG 1116 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig92.18220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig92.18220.1 >prot_L-elsbetiae_contig92.18220.1 ID=prot_L-elsbetiae_contig92.18220.1|Name=mRNA_L-elsbetiae_contig92.18220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1065bp MRKTGGRLAPTRGSFNACLNACRYGRQRDKVLSVLEMMVEDGVPPSGKSYback to top mRNA from alignment at L-elsbetiae_contig92:16739..27389+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig92.18220.1 ID=mRNA_L-elsbetiae_contig92.18220.1|Name=mRNA_L-elsbetiae_contig92.18220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10651bp|location=Sequence derived from alignment at L-elsbetiae_contig92:16739..27389+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig92:16739..27389+ >mRNA_L-elsbetiae_contig92.18220.1 ID=mRNA_L-elsbetiae_contig92.18220.1|Name=mRNA_L-elsbetiae_contig92.18220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6390bp|location=Sequence derived from alignment at L-elsbetiae_contig92:16739..27389+ (Laminarionema elsbetiae ELsaHSoW15)back to top |