prot_L-elsbetiae_contig92.18220.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig92.18220.1
Unique Nameprot_L-elsbetiae_contig92.18220.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1065
Homology
BLAST of mRNA_L-elsbetiae_contig92.18220.1 vs. uniprot
Match: D7FK86_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK86_ECTSI)

HSP 1 Score: 487 bits (1253), Expect = 7.300e-152
Identity = 517/1104 (46.83%), Postives = 573/1104 (51.90%), Query Frame = 0
Query:    1 MRKTGGRLAPTRGSFNACLNACRYGRQRDKVLSVLEMMVEDGVPPSGKSYSSALQACAKDGNVPDARKMLGRMWTSPDLEGGIKGLRPTTWXXXXXXXXXXXXXDWASALELMDEMSGHGLAHDAFTXXXXXXXXXXXXXXXXXXXXXXXXAGAYTDSLGPPRGSGXXXXXXLAAAGDPGAPSLAPTTVHCNAVLRAYGRGKRCVCAPPSTLRIFFLLFSFCTSTNYPSLTVPSYVTANKNYFPSNLCLFFQKSSPGAYRVLCIFPLLAETTYVRFLFVCLSFSYLSSPLMLAVTTHGGAEGGFAPRPPGSPTAAEQPETTPPAADVSDARSXXXXXXXXXXXXXXESGGPLPVWDPRLPLPRPDAISFGTVIDGCSRARLADEAVRLLTKMRQHVMGGAYFTRAGRSAALGGADSRXXXXXXXXXXXXXXXXXXXXRGSLLPPNVHCVTAAITACGRANRPEQAVAVLEEAVALEDAWLEQQLAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSGTILKGAEPAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGLGATGSTLVAAGAAGAATESVFSGALLPAYNAAINSSLGAGRNDEAQALMRSMRKRGLRPGREIFNSLLVACSDSCEALGLLADMELARVDPDVATYTAAIGACSRGGNLRAALELFGMMC-----GGPAA-------GTGGGGCRGRRRXXXXXXRGERIRRGAPRADAQAYGAAAAACARGLDHKAAVRLLGEMREAGLRPGRPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGKGLELLSKMRRKRVRANSTCVNAAIHGFTLLGDWETALDVLESMEMVYQVVPDSA-LALFDRMRSYPPDPPRGDKTAPPSXXXXXXXPSRAQPRPP--LLRVSIRDDGEGL----PAAG-----------DATAGVPGASARDRGLVGSGAVPVRRGNSQGPAXXXXXXXXXXXXRGTSKDGAK-------NKRAGEGG--VFRASSPPRPDTASYNTVIAAVASSWGWEGRGQAMALVDEMRVSGGVISKAAAVCMETWCRE 1065
            MRK GGRLAP+R SFN CLNACR+GRQRDKV+SVLE+MV+DG+PPSGKSYSSALQACAKDGNVPDARKMLG MWTSPDLEGG+KGLRPTT XXXXXXXXXXXXXDW SA+ELMDEM   GL+HDA  XXXXXXXXXXXXXXXXXXXXX   A AYT+SL    GSG         A      SL+PT VHCNA+L+AY RGKR        LR+   + +   +   PS   P                                                      S L+                                                               WDPRLPLPRPDA+SFGTVIDGCSRARLADEAV LL  M +  +GG        +A + G    XXXXXXXXXXXXXXXX       LLPPNVHC+TAAITACGRANR E A+AVL EA  LEDAWL++Q  G                                                 +   A  AA G                                    V       T  A G   A +       L PA+NAAIN+ + AG + EA+ LMR M +RGLRPGRE FNSLLVACS S EA+ +LA+ME ARV PDVA+YTAAIGACSRGG+L AAL LF  M      G  AA       GTG GG  GR              R AP ADAQAYGAAAAACARGLDH+ A+RLLGEMREA LRPGRPM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                            +ME  Y VVPDSA LALFDRMRSYPP+PPR        XXXX    S +  R P   LRVS+ + G       PAA            DA A    +  +  G V  GAV  R     G A               + +GA+        K   +GG   FRASSPPRPDTASYNTVIAAVAS+WGW GRGQA AL+ EM    G +    A C   WC E
Sbjct:    1 MRKAGGRLAPSRSSFNICLNACRHGRQRDKVMSVLELMVQDGIPPSGKSYSSALQACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTXXXXXXXXXXXXXXDWGSAVELMDEMRTRGLSHDAXXXXXXXXXXXXXXXXXXXXXXXEQMADAYTESLEGANGSGDDDAGGGVFAHSGKKSSLSPTAVHCNALLQAYSRGKRV----DKALRLLDEMLAVAPAL--PSSATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XRSALLR--------------------------------------------------------------WDPRLPLPRPDAVSFGTVIDGCSRARLADEAVCLLKVMGEERIGG--------TAPIAGXXXXXXXXXXXXXXXXXXXXSGDT--PLLPPNVHCLTAAITACGRANRLELAIAVLREAAVLEDAWLDEQGRG-------------------------------------------------VEADAGIAASGGRSSVNETAKFNSGKLAGGEDAEATIDGDKSATAGAVAAWDGSETSTAEGPLRARSS------LQPAFNAAINACVKAGSHGEARLLMRDMGERGLRPGREAFNSLLVACSTSYEAMNILAEMERARVAPDVASYTAAIGACSRGGDLPAALGLFEAMRRPSPPGAAAAAARVVEPGTGDGGAGGRAATV----------RAAPMADAQAYGAAAAACARGLDHRGALRLLGEMREARLRPGRPMFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMERTYHVVPDSAGLALFDRMRSYPPNPPRSXXXXXXXXXXXSAA-SHSTKRHPRTFLRVSLPNGGGAAAMVQPAAXXXXXXXXXXXRDAGADSADSVEKSGGEVVGGAVACRE--RAGVAGGEGISTAHPRSAVAATEGAEVSAAVGAGKXXXQGGRSAFRASSPPRPDTASYNTVIAAVASAWGWGGRGQATALLREM----GFLQ---ARCRRDWCEE 941          
BLAST of mRNA_L-elsbetiae_contig92.18220.1 vs. uniprot
Match: A0A6H5KCA9_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA9_9PHAE)

HSP 1 Score: 462 bits (1189), Expect = 5.460e-141
Identity = 534/1160 (46.03%), Postives = 589/1160 (50.78%), Query Frame = 0
Query:    1 MRKTGGRLAPTRGSFNACLNACRYGRQRDKVLSVLEMMVEDGVPPSGKSYSSALQACAKDGNVPDARKMLGRMWTSPDLEGGIKGLRPTTWXXXXXXXXXXXXXDWASALELMDEMSGHGLAHDAFTXXXXXXXXXXXXXXXXXXXXXXXXAGAYTDSLGPPRGSGXXXXXX-LAAAGDPGAPSLAPTTVHCNAVLRAYGRGKRCVCAPPSTLRIFFLLFSFCTSTNYPSLTVPSYVTANKNYFPSNLCLFFQKSSPGAYRVLCIFPLLAETTYVRFLFVCLSFSYLSSPLMLAVTT-----HGGAEGGFAPRPP-----GSPTAAEQPETTPPA---------------ADVSDARSXXXXXXXXXXXXXXESG--GPLPVWDPRLPLPRPDAISFGTVIDGCSRARLADEAVRLLTKMRQHVMGGAYFTRAGRSAALGGADSRXXXXXXXXXXXXXXXXXXXXRGSLLPPNVHCVTAAITACGRANRPEQAVAVLEEAVALEDAWLEQQ------LAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSGTILKGAEPAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGLGATGSTLVAAGAAGAATESVFSGA---------LLPAYNAAINSSLGAGRNDEAQALMRSMRKRGLRPGREIFNSLLVACSDSCEALGLLADMELARVDPDVATYTAAIGACSRGGNLRAALELFGMMC--GGPAA----------GTGGGGCRGRRRXXXXXXRGERIRRGAPRADAQAYGAAAAACARGLDHKAAVRLLGEMREAGLRPGRPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGKGLELLSKMRRKRVRANSTCVNAAIHGFTLLGDWETALDVLESMEMVYQVVPDSA------------------LALFDRMRSYPPDPPRGDKTAPPSXXXXXXXP-SRAQPRPP--LLRVSIRDDGEGLP--------------------------AAGDATAGVPGASARDRGLVGSGAVPVRRGN-SQGPAXXXXXXXXXXXXRGTSKDGAKNKRA---------GEGGVFRASSPPRPDTASYNTVIAAVASSWGWEGRGQAMALVDEMRVSG 1048
            MRK GGRLAP+R SFN CLNACR+GRQRDKV+SVLEMMV+DG+PPSGKSYSSALQACAKDGNVPDARKMLG MWTSPDLEGG+KGLRPTT XXXXXXXXXXXXXDW SA+ELMDEM  HGL+HDAFTXXXXXXXXXXXXXXXXXXXXXX  A AY +SL    GSG       +AA    G   L PT VHCNA+L+AY RGKR        LR+   + +                                               +A      F  V    ++ S       +T      G AE  + P+PP      SP A  +                      A +    S              E      L  WDPRLPLPRPDA+SFGTVIDGCSRARLADEAV LL  M +  +GG          A GG  S                        LLPPNVHC+TAAITACGRANR E A+AVL EA  LEDAWL++Q      L                   XXXXXXXXXXXXXXXXXXXX        TS     G                                                 G    AAGAA A      S A         L PA+NAAIN+ + +G + EA+ LMR M +RGLRPGRE FNSLLV CS S EA+ LLA+ME ARV PDVA+YTAAIGACSRGG+L AAL LF  M     P+A          GTG G   GR              R AP ADAQAYGAAAAACARGLDH+ A+RLLGEMREAGLRPGRPM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                            +ME  + VVPDS                   LALFDRMRSYPP+P          XXXXXXX  S +  R P   LRVS+                                  +A DA  G         G VG GA   R G  S G A               +  GA+   A         G    FRASSPPRPDTASYNTVIAAV S+WGW G+GQA AL+ EMRV G
Sbjct:    1 MRKAGGRLAPSRSSFNICLNACRHGRQRDKVMSVLEMMVQDGIPPSGKSYSSALQACAKDGNVPDARKMLGWMWTSPDLEGGVKGLRPTTXXXXXXXXXXXXXXDWGSAVELMDEMRTHGLSHDAFTXXXXXXXXXXXXXXXXXXXXXXQMADAYIESLEVANGSGDDGTGGDVAACAHSGKSPLFPTAVHCNALLQAYSRGKRV----DKALRLLDEMLAVAPVPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIAAGL-TEFDPVEDEEAFSSGXXXXXXSTSYRRTQGLAEIHYRPQPPLGEGESSPAARSEXXXXXXXXXXXXXXXXXXXXXIAKIGKEESTADGGGGEGSRDNDEGDDWSALLRWDPRLPLPRPDAVSFGTVIDGCSRARLADEAVGLLKVMGEERIGGT------APIAGGGGGSGDTP--------------------LLPPNVHCLTAAITACGRANRLELAMAVLREAAVLEDAWLDEQVRLSRRLQEDDAHEKSSTASPAAAWEXXXXXXXXXXXXXXXXXXXXRNQPPGEDTSPVADSGTSSTTISKERGVGADAGIAASGGRSLVNETAMFNGGKLAGGKDAEATIDGVKSAAAGAAAAWDRRETSTAEGPLPARSSLQPAFNAAINACVKSGSHGEARLLMRDMGERGLRPGREAFNSLLVVCSTSYEAMNLLAEMERARVVPDVASYTAAIGACSRGGDLPAALGLFEAMRRPSPPSAAAATXXXAEPGTGDGAVGGRAAKV----------RAAPMADAQAYGAAAAACARGLDHRGALRLLGEMREAGLRPGRPMFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMERAHHVVPDSVSYNTAMKACFRSGQNQAGLALFDRMRSYPPNPXXXXXXXXXXXXXXXXXXASHSTKRHPRTFLRVSLPKGXXXXXXXXXXXXXXXXXXXXXXXXXXARLQQSARDA--GADSVEKNGGGFVG-GAAACREGEESPGVAGGEGIGTAHSRAAVAATGGAEVSAAVGRXXXXXXGGRSAFRASSPPRPDTASYNTVIAAVGSAWGWGGQGQATALLREMRVRG 1116          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig92.18220.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK86_ECTSI7.300e-15246.83PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KCA9_9PHAE5.460e-14146.03PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 487..512
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 85..152
coord: 7..100
coord: 614..705
coord: 740..884
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..159
e-value: 8.5E-33
score: 116.0
coord: 731..896
e-value: 1.0E-29
score: 105.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 611..720
e-value: 1.1E-17
score: 66.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 93..122
e-value: 4.4E-5
score: 21.4
coord: 680..705
e-value: 0.0017
score: 16.4
coord: 126..151
e-value: 0.0031
score: 15.6
coord: 780..810
e-value: 3.7E-6
score: 24.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 93..121
e-value: 0.0013
score: 18.9
coord: 367..394
e-value: 0.0016
score: 18.6
coord: 613..642
e-value: 0.43
score: 10.9
coord: 680..704
e-value: 0.0017
score: 18.5
coord: 49..74
e-value: 0.052
score: 13.8
coord: 126..151
e-value: 0.099
score: 12.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 365..395
score: 9.197
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 811..845
score: 6.654
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 741..775
score: 9.24
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1014..1051
score: 7.136
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 846..876
score: 6.84
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 124..154
score: 8.703
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 11..45
score: 8.353
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 89..123
score: 9.701
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 445..475
score: 6.303
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 776..810
score: 11.444
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 677..707
score: 8.331
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 610..644
score: 9.383
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 46..76
score: 7.41
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 759..875
e-value: 8.2E-9
score: 35.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig92contigL-elsbetiae_contig92:16762..27389 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig92.18220.1mRNA_L-elsbetiae_contig92.18220.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig92 16739..27389 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig92.18220.1 ID=prot_L-elsbetiae_contig92.18220.1|Name=mRNA_L-elsbetiae_contig92.18220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1065bp
MRKTGGRLAPTRGSFNACLNACRYGRQRDKVLSVLEMMVEDGVPPSGKSY
SSALQACAKDGNVPDARKMLGRMWTSPDLEGGIKGLRPTTWGYNCAMEAC
ARAGDWASALELMDEMSGHGLAHDAFTYGAALEACGRTGNWQKAEAVVKQ
MAGAYTDSLGPPRGSGGGGGGALAAAGDPGAPSLAPTTVHCNAVLRAYGR
GKRCVCAPPSTLRIFFLLFSFCTSTNYPSLTVPSYVTANKNYFPSNLCLF
FQKSSPGAYRVLCIFPLLAETTYVRFLFVCLSFSYLSSPLMLAVTTHGGA
EGGFAPRPPGSPTAAEQPETTPPAADVSDARSTVTTTPAPPGGGGDESGG
PLPVWDPRLPLPRPDAISFGTVIDGCSRARLADEAVRLLTKMRQHVMGGA
YFTRAGRSAALGGADSRGGDSGSGSSGGGGSSGGGSSRGSLLPPNVHCVT
AAITACGRANRPEQAVAVLEEAVALEDAWLEQQLAGRRRQQQQQQQQQQQ
QQQQQQQQQQQRSGEPEEKAGGEDAPVVGGETSGTILKGAEPAAEGSTAA
AGQENAAVTGNRSVEVAAAAAAAAAAVQPPPPVGLGATGSTLVAAGAAGA
ATESVFSGALLPAYNAAINSSLGAGRNDEAQALMRSMRKRGLRPGREIFN
SLLVACSDSCEALGLLADMELARVDPDVATYTAAIGACSRGGNLRAALEL
FGMMCGGPAAGTGGGGCRGRRRRRGGGGRGERIRRGAPRADAQAYGAAAA
ACARGLDHKAAVRLLGEMREAGLRPGRPMFGAVIDACARRGKWEQAIALL
EEMTESGVAPALRHYSSAIFACSLGENPGKGLELLSKMRRKRVRANSTCV
NAAIHGFTLLGDWETALDVLESMEMVYQVVPDSALALFDRMRSYPPDPPR
GDKTAPPSSSSSSSSPSRAQPRPPLLRVSIRDDGEGLPAAGDATAGVPGA
SARDRGLVGSGAVPVRRGNSQGPAPAAAAAAAAAAGRGTSKDGAKNKRAG
EGGVFRASSPPRPDTASYNTVIAAVASSWGWEGRGQAMALVDEMRVSGGV
ISKAAAVCMETWCRE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long